ISStma20
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP088244 | ND | Stenotrophomonas maltophilia | Stenotrophomonas maltophilia Stenotrophomonas maltophilia 2013-SM4 |
DNA section
IS Length : 1431 bp
Ends
IR Length : 21/24
IRL : TGAAGTGATCCCCGGGAGTTGGACATCAGATCCAACCCCGTGGGATACAT
IRR : TGAAGTGACCCCCGAGACTTGGACGGTGGGGTCAGGCGGCTGGTTGGGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACACGCCGTAAACCCGT | CCA | TGGGGGCTCGATGGCG | 3 |
DNA sequence
TGAAGTGATCCCCGGGAGTTGGACATCAGATCCAACCCCGTGGGATACATGAACAGATACGACGCGCGTTTCAAACTGCAGGTCGCCAAAGAGGCCTGCA
AGACCTCCACATCGGTCAAAGCCGTTGCTCGTCGCTACGGCCTGGAGTTCTCCACGGTCAGGCGCTGGGTGGCGACCTATCGGCTGCATGGTTGGCGCGG
GTTTCGCCGCCAGGCCCAGTCCTATGACCTCGCATTCAAGCTGGCTGTCCTGAAGAAGATGGGCCAGGACGGCATGTCCGGGCGGGAGGCCACCACTTAC
TTTCAAATTGGCGATGCCGGCGCGGTGGGGCGGTGGCGTCGGCTGTATGCTCAAGGCGGTGCCCAAGCGCTGGCACCACCTCCGCCGCCGCCCCGAAAGC
CGATGAAAAAGACCCGTTCGTCCAAGCCACCTGAGGAAATGAGCCGCGATGAGCTGCTCAAGGAAGTTGCCTATCTGCGTGCGGAGACCGACTACCTAAA
AAAACTCGATGCCTTGATCCGGGAAGAGCAGGCGGCGCAGGACGCAAAGCGCAAGCCATCCAAGGATTGAGGCAGGTTCATACGCTGTCGCTTCTGCTCG
AAGCGGCAGAGCTGTCACGCAGTACGTTCTATTACCAGAACCATGTCCTGGCCCATCCGGATCAGGATGAGGCAGCCCTGTGCGAGCGCATCCGGGCAAT
CTACGATCAAAGCCAAGGGCGCTATGGGTATCGCACTGTGACGCTGGAACTGGCCAATCAGGGCCATCGGACCAATCACAAGCGGGTACAGCGCCTGATG
GGGGAGATGGGCCTGAAATCACGGGTACGCGTGAAGCGCTACCGGTCCTTCAAAGGGGCCGCCAATGTTGTGGTTGGCAATGACCTCAATCGCCAGTTCC
ATGCCGAGCGGCCCAACCAGAAGTGGGTGACCGACGTCACCGAGTTCAAGGTGCAAGGCATGAAGCTGTACCTGTCGCCGATCATGGACCTCTACAACGG
TGAAATCGTGGCTTATCAGATCAAGCGCCAGCCTGTGTTCGATCTGGTAGGTCAGATGCTGGAGGAGGCCATCAGCAAGCTTTCGCCGGATGAGCGGCCA
ATGATCCACTCCGACCAGGGCTGGCAGTACCAGCATGAGAACTACCGGCACATGCTGGAAAAGCACTCGTTGAAGCAAAGCATGTCCCGACGTGGCAACT
GCTTGGACAATGCGGCAATGGAAAGCTTCTTCGGGACGCTGAAGTCGGAGTTCTTCTACCTGAACAGCTTTGACAGCATCGAGAGTCTGGAGGCCGGGCT
AGTGGAGTACATCAAGTACTACAACCAAGAGCGAATCAGATTGAAATTGAAGGGGCTAAGCCCGGTAAAGTACCGGGAACAGGCCCAACCAGCCGCCTGA
CCCCACCGTCCAAGTCTCGGGGGTCACTTCA
AGACCTCCACATCGGTCAAAGCCGTTGCTCGTCGCTACGGCCTGGAGTTCTCCACGGTCAGGCGCTGGGTGGCGACCTATCGGCTGCATGGTTGGCGCGG
GTTTCGCCGCCAGGCCCAGTCCTATGACCTCGCATTCAAGCTGGCTGTCCTGAAGAAGATGGGCCAGGACGGCATGTCCGGGCGGGAGGCCACCACTTAC
TTTCAAATTGGCGATGCCGGCGCGGTGGGGCGGTGGCGTCGGCTGTATGCTCAAGGCGGTGCCCAAGCGCTGGCACCACCTCCGCCGCCGCCCCGAAAGC
CGATGAAAAAGACCCGTTCGTCCAAGCCACCTGAGGAAATGAGCCGCGATGAGCTGCTCAAGGAAGTTGCCTATCTGCGTGCGGAGACCGACTACCTAAA
AAAACTCGATGCCTTGATCCGGGAAGAGCAGGCGGCGCAGGACGCAAAGCGCAAGCCATCCAAGGATTGAGGCAGGTTCATACGCTGTCGCTTCTGCTCG
AAGCGGCAGAGCTGTCACGCAGTACGTTCTATTACCAGAACCATGTCCTGGCCCATCCGGATCAGGATGAGGCAGCCCTGTGCGAGCGCATCCGGGCAAT
CTACGATCAAAGCCAAGGGCGCTATGGGTATCGCACTGTGACGCTGGAACTGGCCAATCAGGGCCATCGGACCAATCACAAGCGGGTACAGCGCCTGATG
GGGGAGATGGGCCTGAAATCACGGGTACGCGTGAAGCGCTACCGGTCCTTCAAAGGGGCCGCCAATGTTGTGGTTGGCAATGACCTCAATCGCCAGTTCC
ATGCCGAGCGGCCCAACCAGAAGTGGGTGACCGACGTCACCGAGTTCAAGGTGCAAGGCATGAAGCTGTACCTGTCGCCGATCATGGACCTCTACAACGG
TGAAATCGTGGCTTATCAGATCAAGCGCCAGCCTGTGTTCGATCTGGTAGGTCAGATGCTGGAGGAGGCCATCAGCAAGCTTTCGCCGGATGAGCGGCCA
ATGATCCACTCCGACCAGGGCTGGCAGTACCAGCATGAGAACTACCGGCACATGCTGGAAAAGCACTCGTTGAAGCAAAGCATGTCCCGACGTGGCAACT
GCTTGGACAATGCGGCAATGGAAAGCTTCTTCGGGACGCTGAAGTCGGAGTTCTTCTACCTGAACAGCTTTGACAGCATCGAGAGTCTGGAGGCCGGGCT
AGTGGAGTACATCAAGTACTACAACCAAGAGCGAATCAGATTGAAATTGAAGGGGCTAAGCCCGGTAAAGTACCGGGAACAGGCCCAACCAGCCGCCTGA
CCCCACCGTCCAAGTCTCGGGGGTCACTTCA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
522 bp | 173 aa | 49 | 570 | + | No |
Description : First part of the transposase
ORF sequence :
MNRYDARFKLQVAKEACKTSTSVKAVARRYGLEFSTVRRWVATYRLHGWRGFRRQAQSYDLAFKLAVLKKMGQDGMSGREATTYFQIGDAGAVGRWRRLY
AQGGAQALAPPPPPPRKPMKKTRSSKPPEEMSRDELLKEVAYLRAETDYLKKLDALIREEQAAQDAKRKPSKD
AQGGAQALAPPPPPPRKPMKKTRSSKPPEEMSRDELLKEVAYLRAETDYLKKLDALIREEQAAQDAKRKPSKD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 453 | 1400 | + | No |
Description : Second part of the transposase
ORF sequence :
AAQGSCLSACGDRLPKKTRCLDPGRAGGAGRKAQAIQGLRQVHTLSLLLEAAELSRSTFYYQNHVLAHPDQDEAALCERIRAIYDQSQGRYGYRTVTLEL
ANQGHRTNHKRVQRLMGEMGLKSRVRVKRYRSFKGAANVVVGNDLNRQFHAERPNQKWVTDVTEFKVQGMKLYLSPIMDLYNGEIVAYQIKRQPVFDLVG
QMLEEAISKLSPDERPMIHSDQGWQYQHENYRHMLEKHSLKQSMSRRGNCLDNAAMESFFGTLKSEFFYLNSFDSIESLEAGLVEYIKYYNQERIRLKLK
GLSPVKYREQAQPAA
ANQGHRTNHKRVQRLMGEMGLKSRVRVKRYRSFKGAANVVVGNDLNRQFHAERPNQKWVTDVTEFKVQGMKLYLSPIMDLYNGEIVAYQIKRQPVFDLVG
QMLEEAISKLSPDERPMIHSDQGWQYQHENYRHMLEKHSLKQSMSRRGNCLDNAAMESFFGTLKSEFFYLNSFDSIESLEAGLVEYIKYYNQERIRLKLK
GLSPVKYREQAQPAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1352 bp | 450 aa | 49 | 1400 | + | Yes |
Chemistry : DDE
ORF sequence :
MNRYDARFKLQVAKEACKTSTSVKAVARRYGLEFSTVRRWVATYRLHGWRGFRRQAQSYDLAFKLAVLKKMGQDGMSGREATTYFQIGDAGAVGRWRRLY
AQGGAQALAPPPPPPRKPMKKTRSSKPPEEMSRDELLKEVAYLRAETDYLKKTRCLDPGRAGGAGRKAQAIQGLRQVHTLSLLLEAAELSRSTFYYQNHV
LAHPDQDEAALCERIRAIYDQSQGRYGYRTVTLELANQGHRTNHKRVQRLMGEMGLKSRVRVKRYRSFKGAANVVVGNDLNRQFHAERPNQKWVTDVTEF
KVQGMKLYLSPIMDLYNGEIVAYQIKRQPVFDLVGQMLEEAISKLSPDERPMIHSDQGWQYQHENYRHMLEKHSLKQSMSRRGNCLDNAAMESFFGTLKS
EFFYLNSFDSIESLEAGLVEYIKYYNQERIRLKLKGLSPVKYREQAQPAA
AQGGAQALAPPPPPPRKPMKKTRSSKPPEEMSRDELLKEVAYLRAETDYLKKTRCLDPGRAGGAGRKAQAIQGLRQVHTLSLLLEAAELSRSTFYYQNHV
LAHPDQDEAALCERIRAIYDQSQGRYGYRTVTLELANQGHRTNHKRVQRLMGEMGLKSRVRVKRYRSFKGAANVVVGNDLNRQFHAERPNQKWVTDVTEF
KVQGMKLYLSPIMDLYNGEIVAYQIKRQPVFDLVGQMLEEAISKLSPDERPMIHSDQGWQYQHENYRHMLEKHSLKQSMSRRGNCLDNAAMESFFGTLKS
EFFYLNSFDSIESLEAGLVEYIKYYNQERIRLKLKGLSPVKYREQAQPAA
Blast result :
Comments
ISStma20 is 98% aa similar to ISStma2.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Xin Gao (2020) Direct submission.