ISLmo20

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP068981 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes strain B-33043
DNA section
IS Length : 1329 bp

Ends


IR Length : 30/39

IRL : GATAGCGTAAAATATTTTGTGTAAATGAATAAAATCCATACAAAAAAGGA
IRR : GGTTGCGTCAAGAATTATGTGTAAATGGAAAAAACCATTCTGTCGGTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
acatcttcattttttaaagaaatctatagg0

DNA sequence

GATAGCGTAAAATATTTTGTGTAAATGAATAAAATCCATACAAAAAAGGAAGTCCCTTCTGTAGAATTAAGTTTACGACAACCAATTCACAGAAAAGAGG
ACTTCCCTATGAATGATTTTACTACAGAAATTGTGCAAACTCTAGTCACTAAAGGAGATTTAAATGAATTATTCCGTTCACACTTAGAAAGAGCGGTAAA
CACCCTCCTACGGACTGAATTAACGGCTTTCTTAGAGTATGAAAAATATGACCGCACTGGTTTTAATTCAGGTAATTCGAGGAACGGTTCTTATTCTCGA
TCCATCAAAACCGAATATGGTGAATTAACATTGGAGATACCTAGAGATCGAAATGGTGAGTTTAAACAACAAACTTTACCAGCCTACAAAAGAACAAATG
ACACATTGGAAACCACCATCATCCATTTGTTCGAAAAAGGCGTTACGATGTCTGAAATCGCTGATTTAATTGAAAAGATGTATGGGCATCACTATACTCC
ACAAACCATGTCCAACATGACTAAAGTGCTGACTGAAGAAGTAAATGCATTTAAAGTTAGAACTCTAAATGATAAGTATGTCGCTATTTTCATGGATGCT
ACTTATATTCTTTTAAAACGGCAAACCGTCTCCAAAGAAGCTGTATATATTGTCATAGGTATCCGACTAGATGGGACTAAAGAGGTTCTTGGGTTTAGTA
TTGCTCCAACTGAGTCTTCGTATGTTTGGAAAGAAATACTTCAAGACTTAAAAGACCGTGGTTTAGAAGAGGTTTTATTAGTCGTAACTGATGGTTTAAG
CGGCATTAACGATAGTATCCATAGTATTTATTCAAATGCTCAATTTCAACAATGTTGTGTCCATATCTCTAGAAACATTACTCATAAGGTTCGTGTTAGT
GACCGACAAGAAGTCTGTAATGATTTTAAATTGGTTTATCAAGCAGCTTCAAAAGTAGAAGCTATGAATCAAATAAGTTTTATGATAGATAAATGGAAAA
AGCAGTATCCACGAGTAGTTAAATTACTCATGAATCCTGCTATATTAACCTTTTATAGTTTTCCTCCTTCAATCAGAAGAACCATTTATTCAACTAACTT
GATTGAAGGTTTTAACAAACAATTAAAGAAATATACAAAAAGAAAAGAACAATTTCCTAATGAAGAATCTCTGGAGAGATTCTTAGTTTCTCAATTCAAC
AACTATAATCAGAAGTTTTTGTGTCGGATTCATAAAGGTTTTAAAGAAATACAAGATACATTAGAATCAATGTTTTAACTTAACCGACAGAATGGTTTTT
TCCATTTACACATAATTCTTGACGCAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1091278+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDFTTEIVQTLVTKGDLNELFRSHLERAVNTLLRTELTAFLEYEKYDRTGFNSGNSRNGSYSRSIKTEYGELTLEIPRDRNGEFKQQTLPAYKRTNDTL
ETTIIHLFEKGVTMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKVRTLNDKYVAIFMDATYILLKRQTVSKEAVYIVIGIRLDGTKEVLGFSIAP
TESSYVWKEILQDLKDRGLEEVLLVVTDGLSGINDSIHSIYSNAQFQQCCVHISRNITHKVRVSDRQEVCNDFKLVYQAASKVEAMNQISFMIDKWKKQY
PRVVKLLMNPAILTFYSFPPSIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRIHKGFKEIQDTLESMF

 

Blast result :
Comments
ISLmo20 is 93% aa similar to ISEfa13.
ISLmo20 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.