ISLmo20
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP068981 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain B-33043 |
DNA section
IS Length : 1329 bp
Ends
IR Length : 30/39
IRL : GATAGCGTAAAATATTTTGTGTAAATGAATAAAATCCATACAAAAAAGGA
IRR : GGTTGCGTCAAGAATTATGTGTAAATGGAAAAAACCATTCTGTCGGTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
acatcttcatttttt | aaagaaatctatagg | 0 |
DNA sequence
GATAGCGTAAAATATTTTGTGTAAATGAATAAAATCCATACAAAAAAGGAAGTCCCTTCTGTAGAATTAAGTTTACGACAACCAATTCACAGAAAAGAGG
ACTTCCCTATGAATGATTTTACTACAGAAATTGTGCAAACTCTAGTCACTAAAGGAGATTTAAATGAATTATTCCGTTCACACTTAGAAAGAGCGGTAAA
CACCCTCCTACGGACTGAATTAACGGCTTTCTTAGAGTATGAAAAATATGACCGCACTGGTTTTAATTCAGGTAATTCGAGGAACGGTTCTTATTCTCGA
TCCATCAAAACCGAATATGGTGAATTAACATTGGAGATACCTAGAGATCGAAATGGTGAGTTTAAACAACAAACTTTACCAGCCTACAAAAGAACAAATG
ACACATTGGAAACCACCATCATCCATTTGTTCGAAAAAGGCGTTACGATGTCTGAAATCGCTGATTTAATTGAAAAGATGTATGGGCATCACTATACTCC
ACAAACCATGTCCAACATGACTAAAGTGCTGACTGAAGAAGTAAATGCATTTAAAGTTAGAACTCTAAATGATAAGTATGTCGCTATTTTCATGGATGCT
ACTTATATTCTTTTAAAACGGCAAACCGTCTCCAAAGAAGCTGTATATATTGTCATAGGTATCCGACTAGATGGGACTAAAGAGGTTCTTGGGTTTAGTA
TTGCTCCAACTGAGTCTTCGTATGTTTGGAAAGAAATACTTCAAGACTTAAAAGACCGTGGTTTAGAAGAGGTTTTATTAGTCGTAACTGATGGTTTAAG
CGGCATTAACGATAGTATCCATAGTATTTATTCAAATGCTCAATTTCAACAATGTTGTGTCCATATCTCTAGAAACATTACTCATAAGGTTCGTGTTAGT
GACCGACAAGAAGTCTGTAATGATTTTAAATTGGTTTATCAAGCAGCTTCAAAAGTAGAAGCTATGAATCAAATAAGTTTTATGATAGATAAATGGAAAA
AGCAGTATCCACGAGTAGTTAAATTACTCATGAATCCTGCTATATTAACCTTTTATAGTTTTCCTCCTTCAATCAGAAGAACCATTTATTCAACTAACTT
GATTGAAGGTTTTAACAAACAATTAAAGAAATATACAAAAAGAAAAGAACAATTTCCTAATGAAGAATCTCTGGAGAGATTCTTAGTTTCTCAATTCAAC
AACTATAATCAGAAGTTTTTGTGTCGGATTCATAAAGGTTTTAAAGAAATACAAGATACATTAGAATCAATGTTTTAACTTAACCGACAGAATGGTTTTT
TCCATTTACACATAATTCTTGACGCAACC
ACTTCCCTATGAATGATTTTACTACAGAAATTGTGCAAACTCTAGTCACTAAAGGAGATTTAAATGAATTATTCCGTTCACACTTAGAAAGAGCGGTAAA
CACCCTCCTACGGACTGAATTAACGGCTTTCTTAGAGTATGAAAAATATGACCGCACTGGTTTTAATTCAGGTAATTCGAGGAACGGTTCTTATTCTCGA
TCCATCAAAACCGAATATGGTGAATTAACATTGGAGATACCTAGAGATCGAAATGGTGAGTTTAAACAACAAACTTTACCAGCCTACAAAAGAACAAATG
ACACATTGGAAACCACCATCATCCATTTGTTCGAAAAAGGCGTTACGATGTCTGAAATCGCTGATTTAATTGAAAAGATGTATGGGCATCACTATACTCC
ACAAACCATGTCCAACATGACTAAAGTGCTGACTGAAGAAGTAAATGCATTTAAAGTTAGAACTCTAAATGATAAGTATGTCGCTATTTTCATGGATGCT
ACTTATATTCTTTTAAAACGGCAAACCGTCTCCAAAGAAGCTGTATATATTGTCATAGGTATCCGACTAGATGGGACTAAAGAGGTTCTTGGGTTTAGTA
TTGCTCCAACTGAGTCTTCGTATGTTTGGAAAGAAATACTTCAAGACTTAAAAGACCGTGGTTTAGAAGAGGTTTTATTAGTCGTAACTGATGGTTTAAG
CGGCATTAACGATAGTATCCATAGTATTTATTCAAATGCTCAATTTCAACAATGTTGTGTCCATATCTCTAGAAACATTACTCATAAGGTTCGTGTTAGT
GACCGACAAGAAGTCTGTAATGATTTTAAATTGGTTTATCAAGCAGCTTCAAAAGTAGAAGCTATGAATCAAATAAGTTTTATGATAGATAAATGGAAAA
AGCAGTATCCACGAGTAGTTAAATTACTCATGAATCCTGCTATATTAACCTTTTATAGTTTTCCTCCTTCAATCAGAAGAACCATTTATTCAACTAACTT
GATTGAAGGTTTTAACAAACAATTAAAGAAATATACAAAAAGAAAAGAACAATTTCCTAATGAAGAATCTCTGGAGAGATTCTTAGTTTCTCAATTCAAC
AACTATAATCAGAAGTTTTTGTGTCGGATTCATAAAGGTTTTAAAGAAATACAAGATACATTAGAATCAATGTTTTAACTTAACCGACAGAATGGTTTTT
TCCATTTACACATAATTCTTGACGCAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 109 | 1278 | + | No |
Chemistry : DDE
ORF sequence :
MNDFTTEIVQTLVTKGDLNELFRSHLERAVNTLLRTELTAFLEYEKYDRTGFNSGNSRNGSYSRSIKTEYGELTLEIPRDRNGEFKQQTLPAYKRTNDTL
ETTIIHLFEKGVTMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKVRTLNDKYVAIFMDATYILLKRQTVSKEAVYIVIGIRLDGTKEVLGFSIAP
TESSYVWKEILQDLKDRGLEEVLLVVTDGLSGINDSIHSIYSNAQFQQCCVHISRNITHKVRVSDRQEVCNDFKLVYQAASKVEAMNQISFMIDKWKKQY
PRVVKLLMNPAILTFYSFPPSIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRIHKGFKEIQDTLESMF
ETTIIHLFEKGVTMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKVRTLNDKYVAIFMDATYILLKRQTVSKEAVYIVIGIRLDGTKEVLGFSIAP
TESSYVWKEILQDLKDRGLEEVLLVVTDGLSGINDSIHSIYSNAQFQQCCVHISRNITHKVRVSDRQEVCNDFKLVYQAASKVEAMNQISFMIDKWKKQY
PRVVKLLMNPAILTFYSFPPSIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRIHKGFKEIQDTLESMF
Blast result :
Comments
ISLmo20 is 93% aa similar to ISEfa13.
ISLmo20 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
ISLmo20 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.