ISVch11

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
N Vibrio cholerae
Vibrio cholerae
Vibrio cholerae ICDC-VC4602
DNA section
IS Length : 1403 bp

Ends


IR Length : 15/18

IRL : CAACGTAGATCAGATAAGGATCGGTTGACCGATCCTTCTGATGAGAGACA
IRR : CAACGTAGTTCACTTAAGCGGAGCTGCTTTGTGATTAACAGGATATCGGG

Insertion site


Left flankDirect repeatRight flankDR Length
GAAAGGCCGGGACACAACCGGGGACACAACCGGGGACACAACCGGGATTGCA12
AAAAAGCCCGGTCTGAACCGCGGTCTGAACCGCGGTCTGAACCGGGCTTTGA12

DNA sequence

CAACGTAGATCAGATAAGGATCGGTTGACCGATCCTTCTGATGAGAGACAATCGGAAATCTGTTTATAGGTTTCCGATTTTTTATGTCTATTCAAAACTG
CTTTGCCGACTTTCTTGAAGAGAGTCCTGTTGATGTCGCTCAGCTAACCACCTTCTCCGAGCATATTCCTGACGAGTGGATAGCTAAAGCGGCAACACTT
TCCGATAAAGCGACGATTCGTCGACGTCGCTTACCGAGTGATATGGTTCTTTGGCTTATTGTTGGAATGGCGTTTTTCCGCAATGAACCGATTGCCGAAG
TTGCACGGCGAATGAATGTCTGTGCCGAGGGATTAGCCGATGAGGAGTTATTAGCAAAAAGTGCTTTAACGCAAGCAAGGCAACGTCTTGGCAAAGCAGC
CCCAGAATGGTTGTTTAGGCAATGCAGCCACAGATGGGGGTTAGAGCGTTACCCTGAGGATAGTTGGCAAGGTTTGCAAGTCTTTGCTGTGGATGGCGCG
CTTTTTCGAACCGCTGACACACCGGAGCTAAGAGACCATTTTGGGTCAGGTAATACATCCAGCGACAGGCAGACGCCTCATCCAGTATTAAGGGTGGTGA
CCATGATGAATGTTCGCTCTCATGTCATTGTCGATGCAGCTATAAGCCCTTATCGTCGAGGCGAGATTCCTCTTGCTATGCCCTTTATTGACTCCTTACC
GGATAACTCCGTGACCTTATTGGATAAGGGCTTTTATGGTGCAGACTTACTTCTTTCTCTCCAAAATAGTGGTGCTAACAGACATTGGTTGTTACCTGCG
AAGAAAGGGGTGAAATACACCCTTCTGGACGATGAAGAGAGTGACGACATGCGAGTCGAAATGAAAGTCTCTCCACAAGCACGCAAGAAAAATCCTAACC
TACCTGAAACATGGCAAGTGAGAGCCGTGACTTATCAGGTACAAGGTAAGCAAAAAACAGTATTTACGTCTCTTCCCAGAGAGCAGTACGATGCGGGAGC
GGTCGCGGCGCTTTACCACGAGCGATGGGAAATTGAATTAGGCTATCGAGACATAAAAAGTTCGATGCAACACAATGCGTTAGTGCTGAGGAGTAAGACA
GTCGAACTTGTCTATCAAGAGTTATGGGGGCTGTTGCTTGGTTATAACTTGGTGAGACGAGAAGCGAGCCAAGCGGCAGTAGAGCATGGTCGAATGCCCA
ATGAAATCAGTTTTAAGTACGCTTGTCAGTTCATCGCAAGTCAACTCAAAGTCATGAGCAAAGCGGTGTCACCAGGTAATACGCCGAAGCGTCTAAAAAG
TCTGCGAGGAGACTTGTCCATCCTTTTTATAGACAAACGCCCTAAGCCAAATCGGCCTAGGGCGGTAAAAATATCAAAGACCCGATATCCTGTTAATCAC
AAAGCAGCTCCGCTTAAGTGAACTACGTTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa841421+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSIQNCFADFLEESPVDVAQLTTFSEHIPDEWIAKAATLSDKATIRRRRLPSDMVLWLIVGMAFFRNEPIAEVARRMNVCAEGLADEELLAKSALTQARQ
RLGKAAPEWLFRQCSHRWGLERYPEDSWQGLQVFAVDGALFRTADTPELRDHFGSGNTSSDRQTPHPVLRVVTMMNVRSHVIVDAAISPYRRGEIPLAMP
FIDSLPDNSVTLLDKGFYGADLLLSLQNSGANRHWLLPAKKGVKYTLLDDEESDDMRVEMKVSPQARKKNPNLPETWQVRAVTYQVQGKQKTVFTSLPRE
QYDAGAVAALYHERWEIELGYRDIKSSMQHNALVLRSKTVELVYQELWGLLLGYNLVRREASQAAVEHGRMPNEISFKYACQFIASQLKVMSKAVSPGNT
PKRLKSLRGDLSILFIDKRPKPNRPRAVKISKTRYPVNHKAAPLK

 

Blast result :
Comments
ISVch11 is 97% aa similar to ISVvu3.
Two copies of ISVch11 were found in Vibrio cholerae plasmid pICDC-VC4602.
References
1] Bo Pang (2021) Direct submission.