ISVch11
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
N | Vibrio cholerae | Vibrio cholerae Vibrio cholerae ICDC-VC4602 |
DNA section
IS Length : 1403 bp
Ends
IR Length : 15/18
IRL : CAACGTAGATCAGATAAGGATCGGTTGACCGATCCTTCTGATGAGAGACA
IRR : CAACGTAGTTCACTTAAGCGGAGCTGCTTTGTGATTAACAGGATATCGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAGGCCGGGACACAACCG | GGGACACAACCG | GGGACACAACCGGGATTGCA | 12 |
AAAAAGCCCGGTCTGAACCG | CGGTCTGAACCG | CGGTCTGAACCGGGCTTTGA | 12 |
DNA sequence
CAACGTAGATCAGATAAGGATCGGTTGACCGATCCTTCTGATGAGAGACAATCGGAAATCTGTTTATAGGTTTCCGATTTTTTATGTCTATTCAAAACTG
CTTTGCCGACTTTCTTGAAGAGAGTCCTGTTGATGTCGCTCAGCTAACCACCTTCTCCGAGCATATTCCTGACGAGTGGATAGCTAAAGCGGCAACACTT
TCCGATAAAGCGACGATTCGTCGACGTCGCTTACCGAGTGATATGGTTCTTTGGCTTATTGTTGGAATGGCGTTTTTCCGCAATGAACCGATTGCCGAAG
TTGCACGGCGAATGAATGTCTGTGCCGAGGGATTAGCCGATGAGGAGTTATTAGCAAAAAGTGCTTTAACGCAAGCAAGGCAACGTCTTGGCAAAGCAGC
CCCAGAATGGTTGTTTAGGCAATGCAGCCACAGATGGGGGTTAGAGCGTTACCCTGAGGATAGTTGGCAAGGTTTGCAAGTCTTTGCTGTGGATGGCGCG
CTTTTTCGAACCGCTGACACACCGGAGCTAAGAGACCATTTTGGGTCAGGTAATACATCCAGCGACAGGCAGACGCCTCATCCAGTATTAAGGGTGGTGA
CCATGATGAATGTTCGCTCTCATGTCATTGTCGATGCAGCTATAAGCCCTTATCGTCGAGGCGAGATTCCTCTTGCTATGCCCTTTATTGACTCCTTACC
GGATAACTCCGTGACCTTATTGGATAAGGGCTTTTATGGTGCAGACTTACTTCTTTCTCTCCAAAATAGTGGTGCTAACAGACATTGGTTGTTACCTGCG
AAGAAAGGGGTGAAATACACCCTTCTGGACGATGAAGAGAGTGACGACATGCGAGTCGAAATGAAAGTCTCTCCACAAGCACGCAAGAAAAATCCTAACC
TACCTGAAACATGGCAAGTGAGAGCCGTGACTTATCAGGTACAAGGTAAGCAAAAAACAGTATTTACGTCTCTTCCCAGAGAGCAGTACGATGCGGGAGC
GGTCGCGGCGCTTTACCACGAGCGATGGGAAATTGAATTAGGCTATCGAGACATAAAAAGTTCGATGCAACACAATGCGTTAGTGCTGAGGAGTAAGACA
GTCGAACTTGTCTATCAAGAGTTATGGGGGCTGTTGCTTGGTTATAACTTGGTGAGACGAGAAGCGAGCCAAGCGGCAGTAGAGCATGGTCGAATGCCCA
ATGAAATCAGTTTTAAGTACGCTTGTCAGTTCATCGCAAGTCAACTCAAAGTCATGAGCAAAGCGGTGTCACCAGGTAATACGCCGAAGCGTCTAAAAAG
TCTGCGAGGAGACTTGTCCATCCTTTTTATAGACAAACGCCCTAAGCCAAATCGGCCTAGGGCGGTAAAAATATCAAAGACCCGATATCCTGTTAATCAC
AAAGCAGCTCCGCTTAAGTGAACTACGTTG
CTTTGCCGACTTTCTTGAAGAGAGTCCTGTTGATGTCGCTCAGCTAACCACCTTCTCCGAGCATATTCCTGACGAGTGGATAGCTAAAGCGGCAACACTT
TCCGATAAAGCGACGATTCGTCGACGTCGCTTACCGAGTGATATGGTTCTTTGGCTTATTGTTGGAATGGCGTTTTTCCGCAATGAACCGATTGCCGAAG
TTGCACGGCGAATGAATGTCTGTGCCGAGGGATTAGCCGATGAGGAGTTATTAGCAAAAAGTGCTTTAACGCAAGCAAGGCAACGTCTTGGCAAAGCAGC
CCCAGAATGGTTGTTTAGGCAATGCAGCCACAGATGGGGGTTAGAGCGTTACCCTGAGGATAGTTGGCAAGGTTTGCAAGTCTTTGCTGTGGATGGCGCG
CTTTTTCGAACCGCTGACACACCGGAGCTAAGAGACCATTTTGGGTCAGGTAATACATCCAGCGACAGGCAGACGCCTCATCCAGTATTAAGGGTGGTGA
CCATGATGAATGTTCGCTCTCATGTCATTGTCGATGCAGCTATAAGCCCTTATCGTCGAGGCGAGATTCCTCTTGCTATGCCCTTTATTGACTCCTTACC
GGATAACTCCGTGACCTTATTGGATAAGGGCTTTTATGGTGCAGACTTACTTCTTTCTCTCCAAAATAGTGGTGCTAACAGACATTGGTTGTTACCTGCG
AAGAAAGGGGTGAAATACACCCTTCTGGACGATGAAGAGAGTGACGACATGCGAGTCGAAATGAAAGTCTCTCCACAAGCACGCAAGAAAAATCCTAACC
TACCTGAAACATGGCAAGTGAGAGCCGTGACTTATCAGGTACAAGGTAAGCAAAAAACAGTATTTACGTCTCTTCCCAGAGAGCAGTACGATGCGGGAGC
GGTCGCGGCGCTTTACCACGAGCGATGGGAAATTGAATTAGGCTATCGAGACATAAAAAGTTCGATGCAACACAATGCGTTAGTGCTGAGGAGTAAGACA
GTCGAACTTGTCTATCAAGAGTTATGGGGGCTGTTGCTTGGTTATAACTTGGTGAGACGAGAAGCGAGCCAAGCGGCAGTAGAGCATGGTCGAATGCCCA
ATGAAATCAGTTTTAAGTACGCTTGTCAGTTCATCGCAAGTCAACTCAAAGTCATGAGCAAAGCGGTGTCACCAGGTAATACGCCGAAGCGTCTAAAAAG
TCTGCGAGGAGACTTGTCCATCCTTTTTATAGACAAACGCCCTAAGCCAAATCGGCCTAGGGCGGTAAAAATATCAAAGACCCGATATCCTGTTAATCAC
AAAGCAGCTCCGCTTAAGTGAACTACGTTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 84 | 1421 | + | No |
Chemistry : DDE
ORF sequence :
MSIQNCFADFLEESPVDVAQLTTFSEHIPDEWIAKAATLSDKATIRRRRLPSDMVLWLIVGMAFFRNEPIAEVARRMNVCAEGLADEELLAKSALTQARQ
RLGKAAPEWLFRQCSHRWGLERYPEDSWQGLQVFAVDGALFRTADTPELRDHFGSGNTSSDRQTPHPVLRVVTMMNVRSHVIVDAAISPYRRGEIPLAMP
FIDSLPDNSVTLLDKGFYGADLLLSLQNSGANRHWLLPAKKGVKYTLLDDEESDDMRVEMKVSPQARKKNPNLPETWQVRAVTYQVQGKQKTVFTSLPRE
QYDAGAVAALYHERWEIELGYRDIKSSMQHNALVLRSKTVELVYQELWGLLLGYNLVRREASQAAVEHGRMPNEISFKYACQFIASQLKVMSKAVSPGNT
PKRLKSLRGDLSILFIDKRPKPNRPRAVKISKTRYPVNHKAAPLK
RLGKAAPEWLFRQCSHRWGLERYPEDSWQGLQVFAVDGALFRTADTPELRDHFGSGNTSSDRQTPHPVLRVVTMMNVRSHVIVDAAISPYRRGEIPLAMP
FIDSLPDNSVTLLDKGFYGADLLLSLQNSGANRHWLLPAKKGVKYTLLDDEESDDMRVEMKVSPQARKKNPNLPETWQVRAVTYQVQGKQKTVFTSLPRE
QYDAGAVAALYHERWEIELGYRDIKSSMQHNALVLRSKTVELVYQELWGLLLGYNLVRREASQAAVEHGRMPNEISFKYACQFIASQLKVMSKAVSPGNT
PKRLKSLRGDLSILFIDKRPKPNRPRAVKISKTRYPVNHKAAPLK
Blast result :
Comments
ISVch11 is 97% aa similar to ISVvu3.
Two copies of ISVch11 were found in Vibrio cholerae plasmid pICDC-VC4602.
Two copies of ISVch11 were found in Vibrio cholerae plasmid pICDC-VC4602.
References
1] Bo Pang (2021) Direct submission.