ISPa140
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MN894887 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa SE5416 plasmid pSE5416-KPC |
DNA section
IS Length : 2384 bp
Ends
IR Length : 21/24
IRL : GTAAGCGGCCAGCAAACACACCTTCAGAATCCCAGCATTAAGGGCGATGG
IRR : GTAAGCGAACCGCAAACACACCTTGCGCTCGTTAAGCTGGCGTCCACTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAAGCAAGAAC | GTCTGGAG | CACGCCAACCAG | 8 |
DNA sequence
GTAAGCGGCCAGCAAACACACCTTCAGAATCCCAGCATTAAGGGCGATGGTGTCCACCTAAGAATACGTGGACACCATCGCCCTTATCGCAAGGATCACC
ATGCGCCAGCGCACCTCTTATCCAAAACCGTTCAAAGCCCAAGTCGTCCAGGAATGTCTTCAACCTGACGTATCGATAGCCAGCATCGCGCTGCGCCATG
GCATCAACGCCAACCTGGTGCGCAAATGGATTCCGCTCTATCGTGACCGTCAACCTGACGCGCTACCGGCATTCGTGCCGCTGACGATGAAGCCCGAATC
TGAGCCTGCACAACCCACACTGGCGCGCATCGAAATTCCGTTCAAACAACAAACAGTCACAGTGATCTGGCCCGCTGTCGATCCCGATGGCTGTGCGCGC
TTCATTCGCGGTCTCGTCAAATGATTCGCATCGATACAATCTGGCTCGCCACCGAGCCCATGGACATGCGCGCCGGCACCGAAACGGCGTTGGCCCGCGT
CGTCGCGGTCTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTCTTTGCCAACCGCCGCGCCAACCGGATGAAGGTGCTGGTGCATGACGGCATTGGCGTG
TGGTTGGCAGCACGCCGACTGAACCAAGGTAAATTCCACTGGCCGGGCGTTCGTCACGGCGCTCAAGTGGAACTGGACAGCGAGCAAGTTCAGGCACTCA
TCGTCGGATTACCTTGGCAACGCATGGGTGCCAACAGCACCATCACACGGCTTTAGTACTGACTATTGGCATAACCGCCAATCGCCGCCAGTGTGTTGCT
CTGGCATGATTGGCGGCATGACTTCTTTACCCGACCTCGACCAACTGACCCCTGCAGAGCTGCGCGCGTTGCTCGAGCAGACGCTGACATTGCAGTCTCA
AGTCGAGGCGATGAGTCGCAAGATCCAGAACGACAAGATCGTCATCGAGCAGCTCACTCATGAGATCGCTGTCCTCAAACGTCATAAGTACGCCAAACGC
AGCGAACAGATCAGTCCAGAGCAAGGCCGCTTGCTCGATGATTTGCTCAGCACTGACCTTGAGGCCATCGAAGCCGAGCTGAACGCACTTCATCCCGACC
CGGCCCCAAAAGAGCCAGGCCAGAAGCCCAAGCGCGCACCACTGCCTGCACAGCTTCCGCGCACCGTGATTCATCATGAACCCGACAACACCCAATGTGC
GTGTGGCTGCGAGCTTCAGCGCATCGGTGAAGATGTCAGCGAAAAGCTCGATTACACGCCGGGCGTGTTCACGGTTGAGCAGCATGTACGTGGAAAGTGG
GCCTGCCGAAGTTGCGAAACCCTGATCCAGGCACCGGTTCCGGCGCAAGTCATCGACAAAGGCATCCCCACCGCAGGTCTGCTGGCCCATGTCATGGTGG
CCAAGTTCGCTGACCACCTGCCGTTGTACCGGCAGGAAAAGATCTTTGGCCGCGCCGGCCTGGCGATTCCACGCTCGACACTGGCCCGGTGGGTCGGGCA
AACCGGCGCGCAGCTTCAACCGCTTGTCGATGCCCTGCGTGAAGCGGTGCTGGCTCAACCAGTCATCCACGCCGATGAAACACCGGTTCAGATGTTGGCA
CCGGGTGAAAAGAAAACCCATCGAAGTTATGTGTGGGCCTATAGCAGCACTGCTTACGCAGAGCTTAAATCCGTGGTTTACGACTTCAGCCCGAGCCGTG
CCGGCGAGCATGCGCGTAACTTCCTCGGCGACTGGCGCGGCAAGTTGGTGTGCGATGACTTTGCCGGCTACAAGGCCAGTTTCGAGCAGGGCATCGTCGA
GATTGGCTGCATGGCCCATGCGCGCCGCAAGTTCTTTGACTTGCATGCGGCGAACAAGAGCCAGTTGGCCGAGCAGGCCCTTCTGACAATCGGCGCGCTC
TACGAGGTCGAACGGCAGGCCAGGGACATGAGCGAAGAAGACCGCCGGCGAATACGTCAGCGGGATGCGATTCCCATCGCTGAAAAACTGCATGACTGGA
TGCTGACCCAGCGCGAACTGGTACCCGAAGGCTCAGCCATCGCCAAAGCTCTGGATTACAGCTTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGA
CGGCGCCTTGCCCATCGATAACAACCACGTCGAGAACCAAATACGACCGTGGGCACTTGGGCGTGCCAATTGGTTGTTTGCAGGATCACTGCGCAGTGGC
AAGCGGGCGGCGGCGATCATGAGCCTGATTCAGTCGGCGCGCATGAATGGACATGATCCGTATGCCTATCTCAAGGACGTGTTGACGCGACTGCCAACAC
AGCGGGCTAGCGAGATTGAAGCTTTGCTGCCGCATCAGTGGACGCCAGCTTAACGAGCGCAAGGTGTGTTTGCGGTTCGCTTAC
ATGCGCCAGCGCACCTCTTATCCAAAACCGTTCAAAGCCCAAGTCGTCCAGGAATGTCTTCAACCTGACGTATCGATAGCCAGCATCGCGCTGCGCCATG
GCATCAACGCCAACCTGGTGCGCAAATGGATTCCGCTCTATCGTGACCGTCAACCTGACGCGCTACCGGCATTCGTGCCGCTGACGATGAAGCCCGAATC
TGAGCCTGCACAACCCACACTGGCGCGCATCGAAATTCCGTTCAAACAACAAACAGTCACAGTGATCTGGCCCGCTGTCGATCCCGATGGCTGTGCGCGC
TTCATTCGCGGTCTCGTCAAATGATTCGCATCGATACAATCTGGCTCGCCACCGAGCCCATGGACATGCGCGCCGGCACCGAAACGGCGTTGGCCCGCGT
CGTCGCGGTCTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTCTTTGCCAACCGCCGCGCCAACCGGATGAAGGTGCTGGTGCATGACGGCATTGGCGTG
TGGTTGGCAGCACGCCGACTGAACCAAGGTAAATTCCACTGGCCGGGCGTTCGTCACGGCGCTCAAGTGGAACTGGACAGCGAGCAAGTTCAGGCACTCA
TCGTCGGATTACCTTGGCAACGCATGGGTGCCAACAGCACCATCACACGGCTTTAGTACTGACTATTGGCATAACCGCCAATCGCCGCCAGTGTGTTGCT
CTGGCATGATTGGCGGCATGACTTCTTTACCCGACCTCGACCAACTGACCCCTGCAGAGCTGCGCGCGTTGCTCGAGCAGACGCTGACATTGCAGTCTCA
AGTCGAGGCGATGAGTCGCAAGATCCAGAACGACAAGATCGTCATCGAGCAGCTCACTCATGAGATCGCTGTCCTCAAACGTCATAAGTACGCCAAACGC
AGCGAACAGATCAGTCCAGAGCAAGGCCGCTTGCTCGATGATTTGCTCAGCACTGACCTTGAGGCCATCGAAGCCGAGCTGAACGCACTTCATCCCGACC
CGGCCCCAAAAGAGCCAGGCCAGAAGCCCAAGCGCGCACCACTGCCTGCACAGCTTCCGCGCACCGTGATTCATCATGAACCCGACAACACCCAATGTGC
GTGTGGCTGCGAGCTTCAGCGCATCGGTGAAGATGTCAGCGAAAAGCTCGATTACACGCCGGGCGTGTTCACGGTTGAGCAGCATGTACGTGGAAAGTGG
GCCTGCCGAAGTTGCGAAACCCTGATCCAGGCACCGGTTCCGGCGCAAGTCATCGACAAAGGCATCCCCACCGCAGGTCTGCTGGCCCATGTCATGGTGG
CCAAGTTCGCTGACCACCTGCCGTTGTACCGGCAGGAAAAGATCTTTGGCCGCGCCGGCCTGGCGATTCCACGCTCGACACTGGCCCGGTGGGTCGGGCA
AACCGGCGCGCAGCTTCAACCGCTTGTCGATGCCCTGCGTGAAGCGGTGCTGGCTCAACCAGTCATCCACGCCGATGAAACACCGGTTCAGATGTTGGCA
CCGGGTGAAAAGAAAACCCATCGAAGTTATGTGTGGGCCTATAGCAGCACTGCTTACGCAGAGCTTAAATCCGTGGTTTACGACTTCAGCCCGAGCCGTG
CCGGCGAGCATGCGCGTAACTTCCTCGGCGACTGGCGCGGCAAGTTGGTGTGCGATGACTTTGCCGGCTACAAGGCCAGTTTCGAGCAGGGCATCGTCGA
GATTGGCTGCATGGCCCATGCGCGCCGCAAGTTCTTTGACTTGCATGCGGCGAACAAGAGCCAGTTGGCCGAGCAGGCCCTTCTGACAATCGGCGCGCTC
TACGAGGTCGAACGGCAGGCCAGGGACATGAGCGAAGAAGACCGCCGGCGAATACGTCAGCGGGATGCGATTCCCATCGCTGAAAAACTGCATGACTGGA
TGCTGACCCAGCGCGAACTGGTACCCGAAGGCTCAGCCATCGCCAAAGCTCTGGATTACAGCTTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGA
CGGCGCCTTGCCCATCGATAACAACCACGTCGAGAACCAAATACGACCGTGGGCACTTGGGCGTGCCAATTGGTTGTTTGCAGGATCACTGCGCAGTGGC
AAGCGGGCGGCGGCGATCATGAGCCTGATTCAGTCGGCGCGCATGAATGGACATGATCCGTATGCCTATCTCAAGGACGTGTTGACGCGACTGCCAACAC
AGCGGGCTAGCGAGATTGAAGCTTTGCTGCCGCATCAGTGGACGCCAGCTTAACGAGCGCAAGGTGTGTTTGCGGTTCGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
324 bp | 107 aa | 101 | 424 | + | No |
AG : IS66 TnpA
ORF sequence :
MRQRTSYPKPFKAQVVQECLQPDVSIASIALRHGINANLVRKWIPLYRDRQPDALPAFVPLTMKPESEPAQPTLARIEIPFKQQTVTVIWPAVDPDGCAR
FIRGLVK
FIRGLVK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
336 bp | 111 aa | 421 | 756 | + | No |
AG : IS66 TnpB
ORF sequence :
MIRIDTIWLATEPMDMRAGTETALARVVAVFGAAKPHCAYLFANRRANRMKVLVHDGIGVWLAARRLNQGKFHWPGVRHGAQVELDSEQVQALIVGLPWQ
RMGANSTITRL
RMGANSTITRL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1548 bp | 515 aa | 806 | 2353 | + | No |
Chemistry : DDE
ORF sequence :
MIGGMTSLPDLDQLTPAELRALLEQTLTLQSQVEAMSRKIQNDKIVIEQLTHEIAVLKRHKYAKRSEQISPEQGRLLDDLLSTDLEAIEAELNALHPDPA
PKEPGQKPKRAPLPAQLPRTVIHHEPDNTQCACGCELQRIGEDVSEKLDYTPGVFTVEQHVRGKWACRSCETLIQAPVPAQVIDKGIPTAGLLAHVMVAK
FADHLPLYRQEKIFGRAGLAIPRSTLARWVGQTGAQLQPLVDALREAVLAQPVIHADETPVQMLAPGEKKTHRSYVWAYSSTAYAELKSVVYDFSPSRAG
EHARNFLGDWRGKLVCDDFAGYKASFEQGIVEIGCMAHARRKFFDLHAANKSQLAEQALLTIGALYEVERQARDMSEEDRRRIRQRDAIPIAEKLHDWML
TQRELVPEGSAIAKALDYSLKRWVALTRYLDDGALPIDNNHVENQIRPWALGRANWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQR
ASEIEALLPHQWTPA
PKEPGQKPKRAPLPAQLPRTVIHHEPDNTQCACGCELQRIGEDVSEKLDYTPGVFTVEQHVRGKWACRSCETLIQAPVPAQVIDKGIPTAGLLAHVMVAK
FADHLPLYRQEKIFGRAGLAIPRSTLARWVGQTGAQLQPLVDALREAVLAQPVIHADETPVQMLAPGEKKTHRSYVWAYSSTAYAELKSVVYDFSPSRAG
EHARNFLGDWRGKLVCDDFAGYKASFEQGIVEIGCMAHARRKFFDLHAANKSQLAEQALLTIGALYEVERQARDMSEEDRRRIRQRDAIPIAEKLHDWML
TQRELVPEGSAIAKALDYSLKRWVALTRYLDDGALPIDNNHVENQIRPWALGRANWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQR
ASEIEALLPHQWTPA
Blast result :
Comments
ISPa140 is 89% aa similar (transposase) to ISPa122.
References
1] Hong Du (2021) Direct submission.