ISLmo17

  • Family IS3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_CP007583 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes strain XYSN
DNA section
IS Length : 1474 bp

Ends


IR Length : 30/41

IRL : TACAATGGTACCTATAGAATGGACACTTCAAAAAAAGAAGTGCATTCTAT
IRR : TAAAGTGGTACCCATGTCAAGGACACTTGTAAAAAGAAAGAATTAAGCAC

Comments : Ends based on alignment of multiple copies present in the genome

Insertion site


Left flankDirect repeatRight flankDR Length
acaaaaaagagccttTCTGttagctaacggaaag4
aaaaaagagcatcccCGGGgatgctcttttttat4
attaaaaagaaggtaGCCtatggtttaggctac3
aaaagaaaaaacgatGTTAcgacatatttgggaa4

DNA sequence

TACAATGGTACCTATAGAATGGACACTTCAAAAAAAGAAGTGCATTCTATAGGTGTTTTTTGTATACTCAACTAAAGGAAACAATCCCGCTCGAAAGGAA
GAAACTATGAGTAAAAAACTGTTCTCAGATATTGAAATCCAAAAACTAAAACAAAATCCTAATGTAAGAAACGTCTCACCACGTGCTATCACGTACTCTG
ACGCTTTCAAGCGTATCTTTGTGGAACGTTATCTTGCAGGAGAATTACCACGCGCTATTTTTGAAGCGTATCATTTCGATGTCTCCGTCCTAGGCATGAA
GCGAGTAGAACAATGTGCTAATCGTTGGAAAAAAGCCTATGAAAAAGAGAGTGTTATTGGGTTAATGGACAACCGCAAAGTCGCTCAAAAAAGGCCTAAA
CGAGTGCTAACTTCAGAAGAGACTATTCAGCGGCAACAAGCAAAAATAGCCCTATTAGAGGAGCAAGTCGCTGTTCTAAAAAAGCTCGAGAAGATAGAAG
GAAGGTGCTTCACAAGAAAAGATAAATTAACAGCGGATATGAAATTTCAATGGATTCAAACGTTAGTCATGAATGAGAGCTTTACTCGTTTCACGAGCTA
TTTCTGTCGTTTATTAGAGGTGTCTAGATCTGGCTATTATCGATATATACAGTGCCAATCACATCGTAAACAGCGTGAGGAGCAAGATGAAATAGCCCGT
GATTTAATACTGAAAGCCTTCCAACGCCGTGGGTTCAAAAAGGGAGCTAGGAGTATCAAAATGGTGTTGGAAAATGAATTTAACATTATTTACAGCCGTA
AGAAAATCCGTAGGATTATGCGCAAATATAACATCGTTTGTCCCCATCGTAAACCGAAGCCTTATCGATGCATCGCCAAGGCAACCCAAGAGCATCGCGT
CATTCCAAATAAATTAAAACGTCAATTTAAGCAAGGTATTCCTGGAAAAGTGCTACTTACAGATATCACGTATCTCCCCTACGGTGAGCGCAAAATGGCT
TATTTATCAACCATTAAAGACGGATCAACGAATGAAATATTAGCCTACCATGTATCAGACCGCATCACCTTAGATATTGCGATACAAACGATTAAGAAGC
TCAAAAAAAGGAAACATCTTTTACATAAAGAAGCTTTCATTCACTCAGATCAAGGGAGCCATTATACTAGTCCAATCTATCAAAAACTCTTAAAAAAACA
TCGCTTAGGCCAGTCTATGTCTCGCCGAAGAAACTGTTGGGATAATGCTCCGCAGGAGTCCTTCTTTGGTCATTTCAAAGATGACATCGATTCTCACTCC
TTGGATACCTTGGCTGCCCTGAAATCAAAAATAGATTACTACATGGTTTACTATAATAACTATCGTTATCAATGGAATCTAAAAAAGATGGCTCCTGTAC
AATACAGAAACCATCTTTTAGCGAGTGCTTAATTCTTTCTTTTTACAAGTGTCCTTGACATGGGTACCACTTTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1326 bp441 aa1071432+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKKLFSDIEIQKLKQNPNVRNVSPRAITYSDAFKRIFVERYLAGELPRAIFEAYHFDVSVLGMKRVEQCANRWKKAYEKESVIGLMDNRKVAQKRPKRV
LTSEETIQRQQAKIALLEEQVAVLKKLEKIEGRCFTRKDKLTADMKFQWIQTLVMNESFTRFTSYFCRLLEVSRSGYYRYIQCQSHRKQREEQDEIARDL
ILKAFQRRGFKKGARSIKMVLENEFNIIYSRKKIRRIMRKYNIVCPHRKPKPYRCIAKATQEHRVIPNKLKRQFKQGIPGKVLLTDITYLPYGERKMAYL
STIKDGSTNEILAYHVSDRITLDIAIQTIKKLKKRKHLLHKEAFIHSDQGSHYTSPIYQKLLKKHRLGQSMSRRRNCWDNAPQESFFGHFKDDIDSHSLD
TLAALKSKIDYYMVYYNNYRYQWNLKKMAPVQYRNHLLASA

 

Blast result :
Comments
ISLmo17 is 69% aa similar to ISBce14.
ISLmo17 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.
2] Yin, Y., Yao, H., Doijad, S. et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun 10, 4283 (2019). https://doi.org/10.1038/s41467-019-12072-1