ISLmo17
- Family IS3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_CP007583 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain XYSN |
DNA section
IS Length : 1474 bp
Ends
IR Length : 30/41
IRL : TACAATGGTACCTATAGAATGGACACTTCAAAAAAAGAAGTGCATTCTAT
IRR : TAAAGTGGTACCCATGTCAAGGACACTTGTAAAAAGAAAGAATTAAGCAC
Comments : Ends based on alignment of multiple copies present in the genome
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
acaaaaaagagcctt | TCTG | ttagctaacggaaag | 4 |
aaaaaagagcatccc | CGGG | gatgctcttttttat | 4 |
attaaaaagaaggta | GCC | tatggtttaggctac | 3 |
aaaagaaaaaacgat | GTTA | cgacatatttgggaa | 4 |
DNA sequence
TACAATGGTACCTATAGAATGGACACTTCAAAAAAAGAAGTGCATTCTATAGGTGTTTTTTGTATACTCAACTAAAGGAAACAATCCCGCTCGAAAGGAA
GAAACTATGAGTAAAAAACTGTTCTCAGATATTGAAATCCAAAAACTAAAACAAAATCCTAATGTAAGAAACGTCTCACCACGTGCTATCACGTACTCTG
ACGCTTTCAAGCGTATCTTTGTGGAACGTTATCTTGCAGGAGAATTACCACGCGCTATTTTTGAAGCGTATCATTTCGATGTCTCCGTCCTAGGCATGAA
GCGAGTAGAACAATGTGCTAATCGTTGGAAAAAAGCCTATGAAAAAGAGAGTGTTATTGGGTTAATGGACAACCGCAAAGTCGCTCAAAAAAGGCCTAAA
CGAGTGCTAACTTCAGAAGAGACTATTCAGCGGCAACAAGCAAAAATAGCCCTATTAGAGGAGCAAGTCGCTGTTCTAAAAAAGCTCGAGAAGATAGAAG
GAAGGTGCTTCACAAGAAAAGATAAATTAACAGCGGATATGAAATTTCAATGGATTCAAACGTTAGTCATGAATGAGAGCTTTACTCGTTTCACGAGCTA
TTTCTGTCGTTTATTAGAGGTGTCTAGATCTGGCTATTATCGATATATACAGTGCCAATCACATCGTAAACAGCGTGAGGAGCAAGATGAAATAGCCCGT
GATTTAATACTGAAAGCCTTCCAACGCCGTGGGTTCAAAAAGGGAGCTAGGAGTATCAAAATGGTGTTGGAAAATGAATTTAACATTATTTACAGCCGTA
AGAAAATCCGTAGGATTATGCGCAAATATAACATCGTTTGTCCCCATCGTAAACCGAAGCCTTATCGATGCATCGCCAAGGCAACCCAAGAGCATCGCGT
CATTCCAAATAAATTAAAACGTCAATTTAAGCAAGGTATTCCTGGAAAAGTGCTACTTACAGATATCACGTATCTCCCCTACGGTGAGCGCAAAATGGCT
TATTTATCAACCATTAAAGACGGATCAACGAATGAAATATTAGCCTACCATGTATCAGACCGCATCACCTTAGATATTGCGATACAAACGATTAAGAAGC
TCAAAAAAAGGAAACATCTTTTACATAAAGAAGCTTTCATTCACTCAGATCAAGGGAGCCATTATACTAGTCCAATCTATCAAAAACTCTTAAAAAAACA
TCGCTTAGGCCAGTCTATGTCTCGCCGAAGAAACTGTTGGGATAATGCTCCGCAGGAGTCCTTCTTTGGTCATTTCAAAGATGACATCGATTCTCACTCC
TTGGATACCTTGGCTGCCCTGAAATCAAAAATAGATTACTACATGGTTTACTATAATAACTATCGTTATCAATGGAATCTAAAAAAGATGGCTCCTGTAC
AATACAGAAACCATCTTTTAGCGAGTGCTTAATTCTTTCTTTTTACAAGTGTCCTTGACATGGGTACCACTTTA
GAAACTATGAGTAAAAAACTGTTCTCAGATATTGAAATCCAAAAACTAAAACAAAATCCTAATGTAAGAAACGTCTCACCACGTGCTATCACGTACTCTG
ACGCTTTCAAGCGTATCTTTGTGGAACGTTATCTTGCAGGAGAATTACCACGCGCTATTTTTGAAGCGTATCATTTCGATGTCTCCGTCCTAGGCATGAA
GCGAGTAGAACAATGTGCTAATCGTTGGAAAAAAGCCTATGAAAAAGAGAGTGTTATTGGGTTAATGGACAACCGCAAAGTCGCTCAAAAAAGGCCTAAA
CGAGTGCTAACTTCAGAAGAGACTATTCAGCGGCAACAAGCAAAAATAGCCCTATTAGAGGAGCAAGTCGCTGTTCTAAAAAAGCTCGAGAAGATAGAAG
GAAGGTGCTTCACAAGAAAAGATAAATTAACAGCGGATATGAAATTTCAATGGATTCAAACGTTAGTCATGAATGAGAGCTTTACTCGTTTCACGAGCTA
TTTCTGTCGTTTATTAGAGGTGTCTAGATCTGGCTATTATCGATATATACAGTGCCAATCACATCGTAAACAGCGTGAGGAGCAAGATGAAATAGCCCGT
GATTTAATACTGAAAGCCTTCCAACGCCGTGGGTTCAAAAAGGGAGCTAGGAGTATCAAAATGGTGTTGGAAAATGAATTTAACATTATTTACAGCCGTA
AGAAAATCCGTAGGATTATGCGCAAATATAACATCGTTTGTCCCCATCGTAAACCGAAGCCTTATCGATGCATCGCCAAGGCAACCCAAGAGCATCGCGT
CATTCCAAATAAATTAAAACGTCAATTTAAGCAAGGTATTCCTGGAAAAGTGCTACTTACAGATATCACGTATCTCCCCTACGGTGAGCGCAAAATGGCT
TATTTATCAACCATTAAAGACGGATCAACGAATGAAATATTAGCCTACCATGTATCAGACCGCATCACCTTAGATATTGCGATACAAACGATTAAGAAGC
TCAAAAAAAGGAAACATCTTTTACATAAAGAAGCTTTCATTCACTCAGATCAAGGGAGCCATTATACTAGTCCAATCTATCAAAAACTCTTAAAAAAACA
TCGCTTAGGCCAGTCTATGTCTCGCCGAAGAAACTGTTGGGATAATGCTCCGCAGGAGTCCTTCTTTGGTCATTTCAAAGATGACATCGATTCTCACTCC
TTGGATACCTTGGCTGCCCTGAAATCAAAAATAGATTACTACATGGTTTACTATAATAACTATCGTTATCAATGGAATCTAAAAAAGATGGCTCCTGTAC
AATACAGAAACCATCTTTTAGCGAGTGCTTAATTCTTTCTTTTTACAAGTGTCCTTGACATGGGTACCACTTTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1326 bp | 441 aa | 107 | 1432 | + | No |
Chemistry : DDE
ORF sequence :
MSKKLFSDIEIQKLKQNPNVRNVSPRAITYSDAFKRIFVERYLAGELPRAIFEAYHFDVSVLGMKRVEQCANRWKKAYEKESVIGLMDNRKVAQKRPKRV
LTSEETIQRQQAKIALLEEQVAVLKKLEKIEGRCFTRKDKLTADMKFQWIQTLVMNESFTRFTSYFCRLLEVSRSGYYRYIQCQSHRKQREEQDEIARDL
ILKAFQRRGFKKGARSIKMVLENEFNIIYSRKKIRRIMRKYNIVCPHRKPKPYRCIAKATQEHRVIPNKLKRQFKQGIPGKVLLTDITYLPYGERKMAYL
STIKDGSTNEILAYHVSDRITLDIAIQTIKKLKKRKHLLHKEAFIHSDQGSHYTSPIYQKLLKKHRLGQSMSRRRNCWDNAPQESFFGHFKDDIDSHSLD
TLAALKSKIDYYMVYYNNYRYQWNLKKMAPVQYRNHLLASA
LTSEETIQRQQAKIALLEEQVAVLKKLEKIEGRCFTRKDKLTADMKFQWIQTLVMNESFTRFTSYFCRLLEVSRSGYYRYIQCQSHRKQREEQDEIARDL
ILKAFQRRGFKKGARSIKMVLENEFNIIYSRKKIRRIMRKYNIVCPHRKPKPYRCIAKATQEHRVIPNKLKRQFKQGIPGKVLLTDITYLPYGERKMAYL
STIKDGSTNEILAYHVSDRITLDIAIQTIKKLKKRKHLLHKEAFIHSDQGSHYTSPIYQKLLKKHRLGQSMSRRRNCWDNAPQESFFGHFKDDIDSHSLD
TLAALKSKIDYYMVYYNNYRYQWNLKKMAPVQYRNHLLASA
Blast result :
Comments
ISLmo17 is 69% aa similar to ISBce14.
ISLmo17 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN.
ISLmo17 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.
2] Yin, Y., Yao, H., Doijad, S. et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun 10, 4283 (2019). https://doi.org/10.1038/s41467-019-12072-1
2] Yin, Y., Yao, H., Doijad, S. et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun 10, 4283 (2019). https://doi.org/10.1038/s41467-019-12072-1