ISLiv3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009576.1 | ND | Listeria ivanovii | Listeria ivanovii subsp. londoniensis WSLC 30151 Listeria ivanovii |
DNA section
IS Length : 2362 bp
Ends
IR Length : 20/27
IRL : TGTTTATGCTAATTTAAAAAGGGGCCACTTTTTATAGGTGCGATGGTTGA
IRR : TGTTAAACGCAACTGAAAAAGGGGCCATCGGATGATTCAAAAAGGGGCCA
Comments : Ends based on alignment to related ISs
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tatgcgcgtattttc | ttggtagagaaattt | 0 | |
TCTCTTATTTCATTC | ACACT | CAAATCTAATTCT | 5 |
DNA sequence
TGTTTATGCTAATTTAAAAAGGGGCCACTTTTTATAGGTGCGATGGTTGAAAAAGGGACCACTACTAACTCACAATAAGTAAAGAGTCAGTTTACTTATT
GGAGGTCCTGGAGTGATAAAATTTATGGATAAATTAACCATCATACGTCTATTAGAAGGTGGGCGTTCTCAACGATCTGTCGCAAAAGAATTGGGACTAA
ACCGAAAAACGGTTAGTCGTTATTGGAGACAATATCAAATTGCACAACGAAACTTAGAAAATGACCCAGCAGATCCTATGAAAAAAGAGGCATTAACTGC
CCCCCCTACTTATCAATCTAAGAATAGAAAACCAAGGAAATATACTCCTGAAATCGACCAACGGGTCGAAGAAATACTTGCCTTTGATCAGTTAAAAGCA
AAACAGTTGGGTCCTCATAAACAACAATTAACGATTGTTGCTATTCACGAAATACTAGTATCTGAAGGGTTTGACATTGCACAGAGTACTTTACGTCCTT
ATGTTCGAGAAAAAGTCCAAGCAAAAAAAGAAGCTTATATCAAGCAATTATATCCTTTAGGCTATCGGGCAGAATTTGATTTTGGAGAAGTAAAATGTTT
GATCAATCAACAAAAACGAACGTTAACTATCGCTGTATTTTCTTGTCCTGCTTCTGGTTATCGCTGGGGGAAACTTTATGAATCGGCGAACCAACAAGTG
TTTCTTGATGCACATATCCGTTTTTTTGAACACCTCAAAGGTGTTTATTCAACAGTCGTTTATGACAATATGCGAAATGTAGTTAAACGTTTCATAGGTC
CACATGAAAAGGAGCTCAATGATGAATTAGTAAAATTAGCTCTTTACTACCGTTTTGAACCAATTGTAACCAATGCATTTAGTGGTCATGAAAAAGGACA
CGTAGAAAAAAGTGTCCAGGTTCTCCGAAGAAAAGCATTCATTAAACAATATGAGTTTGAATCAATTGAACACGCTCAAAAACATCTAGATCAGGCAATG
ATTGAACTGAATTCAGCTTCAACAATTGTGGTGGAACAAGCTCAGTTACAAGCACTGAGAGGAAGTTATGATTATGGTGTAACAACAAAGCAAACCGTAG
ACAAATATAGTTTTGTACATGTAGACGGAAATTATTACTCTGTGCCAGATTATTTAGTTGGTCAAAAAGTTACCGTAAAGCGTTACCTCAATGAACTAAA
GATAGTGGGTTCTAGTCAAGTTATCGCTACACATACCATTCAAAAAGGAGAAAAACAATATTCCATTGATATTCGACACTATTTAACCACATTTTTACGA
AAACCTAAGTCACTAGAGCATTCACTTGTATTGAAGAAAGCACCTAAGCTTCATCGCTGCTTCCTTCTGTATTACCAAAAGACTCCACGGAGGTTTCTTC
AATTTATTGAACAACACTTGGGAGATTCCATAGACCAACTCATTCTACAGTTGGAAGAAGAAGCAATAAAAGACCAAAAGGTCTTTAAAACTTTGCCGGG
TCGTGCAGTAAATGAAGCAAGAAATCAATTGCAAGAATACAATGTGATCCATCAGGTGAGAAAGGTGATAAATAAATGATTGAAACATACGCTAAACAAC
TAAAACTTCCTTATTTAAAAAGAAATTATTCGGCTTTGATCCAGCAAGCAATTGATCTTGATCAAAGTTATGAAGAATTTATCACTCAAGTACTTACAGT
AGAACTTGAGCAACGACAAAACAATCGAATCCAAACATTGATACGTCAATCAAAATTACCAAGTAAAGTTACTTTTGATGATTATATGGATAGCCATTTA
GAAACCAAATTGAAGAAGCAAATCAAAGAACTGAAAACCTTACGTTTTATTGAACAAAAAGAGAATCTTATTCTAATGGGAAATCCAGGCGTTGGAAAAA
CACATTTAGCGACTGTTCTTGGAATGGAAGCTTGTCTTTCAGGTAAAAGTGTTCTATTTACCAATATTCCCAATCTAGTCATCGAATTAAAAGAATCTAT
GAGTGCCAATCAACTAAATTTTTATAAACGTCGATTTGGCAAATACGATTTAGTTATCCTAGATGAATTAGGTTATGTTTCATTTGATCAAGTTGGTAGC
GAAATACTGTTTAATCTTCTTTCCAATAGAACAACTGCTGGTTCTATGATTATTACAACAAATCTGTCATTTGATCGTTGGGAAGAAACTTTTAAAGATC
CAATGCTTACGGCAGCTATGGTGGACCGTTTGGCCCATCGGGCCCATGTATTGGATCTCAGTGGTCCATCTTTTCGTGTAGAAGATACCAAGAATTGGCT
AAAATAATTTTTTGGCCCCTTTTTGAATCATCCGATGGCCCCTTTTTCAGTTGCGTTTAACA
GGAGGTCCTGGAGTGATAAAATTTATGGATAAATTAACCATCATACGTCTATTAGAAGGTGGGCGTTCTCAACGATCTGTCGCAAAAGAATTGGGACTAA
ACCGAAAAACGGTTAGTCGTTATTGGAGACAATATCAAATTGCACAACGAAACTTAGAAAATGACCCAGCAGATCCTATGAAAAAAGAGGCATTAACTGC
CCCCCCTACTTATCAATCTAAGAATAGAAAACCAAGGAAATATACTCCTGAAATCGACCAACGGGTCGAAGAAATACTTGCCTTTGATCAGTTAAAAGCA
AAACAGTTGGGTCCTCATAAACAACAATTAACGATTGTTGCTATTCACGAAATACTAGTATCTGAAGGGTTTGACATTGCACAGAGTACTTTACGTCCTT
ATGTTCGAGAAAAAGTCCAAGCAAAAAAAGAAGCTTATATCAAGCAATTATATCCTTTAGGCTATCGGGCAGAATTTGATTTTGGAGAAGTAAAATGTTT
GATCAATCAACAAAAACGAACGTTAACTATCGCTGTATTTTCTTGTCCTGCTTCTGGTTATCGCTGGGGGAAACTTTATGAATCGGCGAACCAACAAGTG
TTTCTTGATGCACATATCCGTTTTTTTGAACACCTCAAAGGTGTTTATTCAACAGTCGTTTATGACAATATGCGAAATGTAGTTAAACGTTTCATAGGTC
CACATGAAAAGGAGCTCAATGATGAATTAGTAAAATTAGCTCTTTACTACCGTTTTGAACCAATTGTAACCAATGCATTTAGTGGTCATGAAAAAGGACA
CGTAGAAAAAAGTGTCCAGGTTCTCCGAAGAAAAGCATTCATTAAACAATATGAGTTTGAATCAATTGAACACGCTCAAAAACATCTAGATCAGGCAATG
ATTGAACTGAATTCAGCTTCAACAATTGTGGTGGAACAAGCTCAGTTACAAGCACTGAGAGGAAGTTATGATTATGGTGTAACAACAAAGCAAACCGTAG
ACAAATATAGTTTTGTACATGTAGACGGAAATTATTACTCTGTGCCAGATTATTTAGTTGGTCAAAAAGTTACCGTAAAGCGTTACCTCAATGAACTAAA
GATAGTGGGTTCTAGTCAAGTTATCGCTACACATACCATTCAAAAAGGAGAAAAACAATATTCCATTGATATTCGACACTATTTAACCACATTTTTACGA
AAACCTAAGTCACTAGAGCATTCACTTGTATTGAAGAAAGCACCTAAGCTTCATCGCTGCTTCCTTCTGTATTACCAAAAGACTCCACGGAGGTTTCTTC
AATTTATTGAACAACACTTGGGAGATTCCATAGACCAACTCATTCTACAGTTGGAAGAAGAAGCAATAAAAGACCAAAAGGTCTTTAAAACTTTGCCGGG
TCGTGCAGTAAATGAAGCAAGAAATCAATTGCAAGAATACAATGTGATCCATCAGGTGAGAAAGGTGATAAATAAATGATTGAAACATACGCTAAACAAC
TAAAACTTCCTTATTTAAAAAGAAATTATTCGGCTTTGATCCAGCAAGCAATTGATCTTGATCAAAGTTATGAAGAATTTATCACTCAAGTACTTACAGT
AGAACTTGAGCAACGACAAAACAATCGAATCCAAACATTGATACGTCAATCAAAATTACCAAGTAAAGTTACTTTTGATGATTATATGGATAGCCATTTA
GAAACCAAATTGAAGAAGCAAATCAAAGAACTGAAAACCTTACGTTTTATTGAACAAAAAGAGAATCTTATTCTAATGGGAAATCCAGGCGTTGGAAAAA
CACATTTAGCGACTGTTCTTGGAATGGAAGCTTGTCTTTCAGGTAAAAGTGTTCTATTTACCAATATTCCCAATCTAGTCATCGAATTAAAAGAATCTAT
GAGTGCCAATCAACTAAATTTTTATAAACGTCGATTTGGCAAATACGATTTAGTTATCCTAGATGAATTAGGTTATGTTTCATTTGATCAAGTTGGTAGC
GAAATACTGTTTAATCTTCTTTCCAATAGAACAACTGCTGGTTCTATGATTATTACAACAAATCTGTCATTTGATCGTTGGGAAGAAACTTTTAAAGATC
CAATGCTTACGGCAGCTATGGTGGACCGTTTGGCCCATCGGGCCCATGTATTGGATCTCAGTGGTCCATCTTTTCGTGTAGAAGATACCAAGAATTGGCT
AAAATAATTTTTTGGCCCCTTTTTGAATCATCCGATGGCCCCTTTTTCAGTTGCGTTTAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1455 bp | 484 aa | 125 | 1579 | + | No |
Chemistry : DDE
ORF sequence :
MDKLTIIRLLEGGRSQRSVAKELGLNRKTVSRYWRQYQIAQRNLENDPADPMKKEALTAPPTYQSKNRKPRKYTPEIDQRVEEILAFDQLKAKQLGPHKQ
QLTIVAIHEILVSEGFDIAQSTLRPYVREKVQAKKEAYIKQLYPLGYRAEFDFGEVKCLINQQKRTLTIAVFSCPASGYRWGKLYESANQQVFLDAHIRF
FEHLKGVYSTVVYDNMRNVVKRFIGPHEKELNDELVKLALYYRFEPIVTNAFSGHEKGHVEKSVQVLRRKAFIKQYEFESIEHAQKHLDQAMIELNSAST
IVVEQAQLQALRGSYDYGVTTKQTVDKYSFVHVDGNYYSVPDYLVGQKVTVKRYLNELKIVGSSQVIATHTIQKGEKQYSIDIRHYLTTFLRKPKSLEHS
LVLKKAPKLHRCFLLYYQKTPRRFLQFIEQHLGDSIDQLILQLEEEAIKDQKVFKTLPGRAVNEARNQLQEYNVIHQVRKVINK
QLTIVAIHEILVSEGFDIAQSTLRPYVREKVQAKKEAYIKQLYPLGYRAEFDFGEVKCLINQQKRTLTIAVFSCPASGYRWGKLYESANQQVFLDAHIRF
FEHLKGVYSTVVYDNMRNVVKRFIGPHEKELNDELVKLALYYRFEPIVTNAFSGHEKGHVEKSVQVLRRKAFIKQYEFESIEHAQKHLDQAMIELNSAST
IVVEQAQLQALRGSYDYGVTTKQTVDKYSFVHVDGNYYSVPDYLVGQKVTVKRYLNELKIVGSSQVIATHTIQKGEKQYSIDIRHYLTTFLRKPKSLEHS
LVLKKAPKLHRCFLLYYQKTPRRFLQFIEQHLGDSIDQLILQLEEEAIKDQKVFKTLPGRAVNEARNQLQEYNVIHQVRKVINK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
732 bp | 243 aa | 1576 | 2307 | + | No |
AG : IS21 helper
ORF sequence :
MIETYAKQLKLPYLKRNYSALIQQAIDLDQSYEEFITQVLTVELEQRQNNRIQTLIRQSKLPSKVTFDDYMDSHLETKLKKQIKELKTLRFIEQKENLIL
MGNPGVGKTHLATVLGMEACLSGKSVLFTNIPNLVIELKESMSANQLNFYKRRFGKYDLVILDELGYVSFDQVGSEILFNLLSNRTTAGSMIITTNLSFD
RWEETFKDPMLTAAMVDRLAHRAHVLDLSGPSFRVEDTKNWLK
MGNPGVGKTHLATVLGMEACLSGKSVLFTNIPNLVIELKESMSANQLNFYKRRFGKYDLVILDELGYVSFDQVGSEILFNLLSNRTTAGSMIITTNLSFD
RWEETFKDPMLTAAMVDRLAHRAHVLDLSGPSFRVEDTKNWLK
Blast result :
Comments
ISLiv3 is 58% aa similar (transposase) to ISEfa15.
ISLiv3 was identified by in silico sequence analysis of Listeria ivanovii strains.
ISLiv3 was identified by in silico sequence analysis of Listeria ivanovii strains.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.
2] Hupfeld,M., Fouts,D.E., Loessner,M.J. and Klumpp,J. (2015) Genome Announc 3 (1).
2] Hupfeld,M., Fouts,D.E., Loessner,M.J. and Klumpp,J. (2015) Genome Announc 3 (1).