ISH51

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001956 ND Haloferax volcanii
Halobacterium salinarum
Haloferax volcanii DS2
Halobacterium marismortui
Halobacterium volcanii plasmid pHV1
Halobacterium volcanii plasmid pHV2
DNA section
IS Length : 1398 bp

Ends


IR Length : 15/16

IRL : CAGTACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGAAGATGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGACCATAATTAGTCTAAGAACGTGA5

DNA sequence

CAGTACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGAAGATGTGTCCAACAACCAGCAAACAGACGATGAAATCCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTCTCTTGACGAGGAAGTTGCTCTCTCACTCGCTGAAAACGCTGAACTCGATGCTGAAGACATCTACGAGGTCCTCGTCGGCGCCTGC
GCCGACGGGACCTCGGTCTCTACACTCTGCAAGAGAAGCGAAGATGCACCTCACGAAAACTCGGTTCTCTACCATCTCCGCACCAAGTTCGACCTCGAGA
CGCTCGAACAAATCGGGAACACGCTCCTCCAGAAGGACATTCTCAACGTCCTTCCCCAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGCGACGAAGACGATACAGACGGCCTGTATCACTCACAAGCGAAGCGTGGAACCACCGCGTTTCACGCGTACGCGACACTGTACGCACGCGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCAGAGTTCCTCGGTATTCTCGACGGCCTTGACCTCGGTG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCCTACGTCATGCCGATCGTCCGCTGGGG
ACAGACGATCAAGCGAGAACTCTCAGAAGGGTGGAGTCGCGTGATTCAGCACAGTCTGACAGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGGG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCAAGCTATCGACTCTCCGAGCAAAGTATCGCGACGACCTCGACACAAAATCCGGTCGTACG
GCTGTTGTACGTCGTGGTGAGCCTGCTGTTACAGAACGTCTGGCGGTATTTGCACTGGGAGTACGTGGCGACGCCCCGCCGTGGGGGGCGTCGCCTCTGG
GAGTGGTCGTTCAAGGAGTTCATCAATATGGTCCGTCGAGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGACCACCAGACGACC
GGTTCCACCGGTAACTCCCGACCGGGCTAGCCAACGGTGGGAGTGGCGACGCTGTCGCGTCGGCGGCAGCCGCCGCCGACAGCGACGGCTCTCCGCCGAT
CCGTCCATAATTCTCTCGTCGAAACCGCCAGTCCAACCGCTCCGCCACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa481214+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNNQQTDDEIHEDQLLNFLVNSLDEEVALSLAENAELDAEDIYEVLVGACADGTSVSTLCKRSEDAPHENSVLYHLRTKFDLETLEQIGNTLLQKDILN
VLPQQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGQTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEASY
RLSEQSIATTSTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSFKEFINMVRRAAWTALAVRRAVPANRPPDDRFHR

 

Blast result :
Comments
ISH51 is 96% aa similar to ISH3B.
This file replace ISH51-1, ISH51-2 and ISH51-3.
References
1] Lam, W., and Doolittle, W.F. (1989) Proc. Natl. Acad. Sci., USA 86, 5478-5482.

2] Charlebois, R.L., and Doolittle, W.F. (1989) in Berg, D.E., and Howe, M.M. (Eds) American Society for Microbiology, Washington, D.C., USA, pp. 297-307.

3] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925.

4] Hofman, J.D., Schalkwyk, L.C., and Doolittle, W.F. (1986) Nucl. Acids Res. 14, 6983- 6999.

5] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605.