ISH51
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001956 | ND | Haloferax volcanii | Halobacterium salinarum Haloferax volcanii DS2 Halobacterium marismortui Halobacterium volcanii plasmid pHV1 Halobacterium volcanii plasmid pHV2 |
DNA section
IS Length : 1398 bp
Ends
IR Length : 15/16
IRL : CAGTACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGAAGATGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGACCATAATT | AGTCT | AAGAACGTGA | 5 |
DNA sequence
CAGTACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGAAGATGTGTCCAACAACCAGCAAACAGACGATGAAATCCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTCTCTTGACGAGGAAGTTGCTCTCTCACTCGCTGAAAACGCTGAACTCGATGCTGAAGACATCTACGAGGTCCTCGTCGGCGCCTGC
GCCGACGGGACCTCGGTCTCTACACTCTGCAAGAGAAGCGAAGATGCACCTCACGAAAACTCGGTTCTCTACCATCTCCGCACCAAGTTCGACCTCGAGA
CGCTCGAACAAATCGGGAACACGCTCCTCCAGAAGGACATTCTCAACGTCCTTCCCCAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGCGACGAAGACGATACAGACGGCCTGTATCACTCACAAGCGAAGCGTGGAACCACCGCGTTTCACGCGTACGCGACACTGTACGCACGCGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCAGAGTTCCTCGGTATTCTCGACGGCCTTGACCTCGGTG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCCTACGTCATGCCGATCGTCCGCTGGGG
ACAGACGATCAAGCGAGAACTCTCAGAAGGGTGGAGTCGCGTGATTCAGCACAGTCTGACAGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGGG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCAAGCTATCGACTCTCCGAGCAAAGTATCGCGACGACCTCGACACAAAATCCGGTCGTACG
GCTGTTGTACGTCGTGGTGAGCCTGCTGTTACAGAACGTCTGGCGGTATTTGCACTGGGAGTACGTGGCGACGCCCCGCCGTGGGGGGCGTCGCCTCTGG
GAGTGGTCGTTCAAGGAGTTCATCAATATGGTCCGTCGAGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGACCACCAGACGACC
GGTTCCACCGGTAACTCCCGACCGGGCTAGCCAACGGTGGGAGTGGCGACGCTGTCGCGTCGGCGGCAGCCGCCGCCGACAGCGACGGCTCTCCGCCGAT
CCGTCCATAATTCTCTCGTCGAAACCGCCAGTCCAACCGCTCCGCCACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
CTTCCTCGTCAACTCTCTTGACGAGGAAGTTGCTCTCTCACTCGCTGAAAACGCTGAACTCGATGCTGAAGACATCTACGAGGTCCTCGTCGGCGCCTGC
GCCGACGGGACCTCGGTCTCTACACTCTGCAAGAGAAGCGAAGATGCACCTCACGAAAACTCGGTTCTCTACCATCTCCGCACCAAGTTCGACCTCGAGA
CGCTCGAACAAATCGGGAACACGCTCCTCCAGAAGGACATTCTCAACGTCCTTCCCCAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGCGACGAAGACGATACAGACGGCCTGTATCACTCACAAGCGAAGCGTGGAACCACCGCGTTTCACGCGTACGCGACACTGTACGCACGCGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCAGAGTTCCTCGGTATTCTCGACGGCCTTGACCTCGGTG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCCTACGTCATGCCGATCGTCCGCTGGGG
ACAGACGATCAAGCGAGAACTCTCAGAAGGGTGGAGTCGCGTGATTCAGCACAGTCTGACAGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGGG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCAAGCTATCGACTCTCCGAGCAAAGTATCGCGACGACCTCGACACAAAATCCGGTCGTACG
GCTGTTGTACGTCGTGGTGAGCCTGCTGTTACAGAACGTCTGGCGGTATTTGCACTGGGAGTACGTGGCGACGCCCCGCCGTGGGGGGCGTCGCCTCTGG
GAGTGGTCGTTCAAGGAGTTCATCAATATGGTCCGTCGAGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGACCACCAGACGACC
GGTTCCACCGGTAACTCCCGACCGGGCTAGCCAACGGTGGGAGTGGCGACGCTGTCGCGTCGGCGGCAGCCGCCGCCGACAGCGACGGCTCTCCGCCGAT
CCGTCCATAATTCTCTCGTCGAAACCGCCAGTCCAACCGCTCCGCCACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 48 | 1214 | + | No |
Chemistry : DDE
ORF sequence :
MSNNQQTDDEIHEDQLLNFLVNSLDEEVALSLAENAELDAEDIYEVLVGACADGTSVSTLCKRSEDAPHENSVLYHLRTKFDLETLEQIGNTLLQKDILN
VLPQQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGQTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEASY
RLSEQSIATTSTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSFKEFINMVRRAAWTALAVRRAVPANRPPDDRFHR
VLPQQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGQTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEASY
RLSEQSIATTSTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSFKEFINMVRRAAWTALAVRRAVPANRPPDDRFHR
Blast result :
Comments
ISH51 is 96% aa similar to ISH3B.
This file replace ISH51-1, ISH51-2 and ISH51-3.
This file replace ISH51-1, ISH51-2 and ISH51-3.
References
1] Lam, W., and Doolittle, W.F. (1989) Proc. Natl. Acad. Sci., USA 86, 5478-5482.
2] Charlebois, R.L., and Doolittle, W.F. (1989) in Berg, D.E., and Howe, M.M. (Eds) American Society for Microbiology, Washington, D.C., USA, pp. 297-307.
3] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925.
4] Hofman, J.D., Schalkwyk, L.C., and Doolittle, W.F. (1986) Nucl. Acids Res. 14, 6983- 6999.
5] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605.
2] Charlebois, R.L., and Doolittle, W.F. (1989) in Berg, D.E., and Howe, M.M. (Eds) American Society for Microbiology, Washington, D.C., USA, pp. 297-307.
3] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925.
4] Hofman, J.D., Schalkwyk, L.C., and Doolittle, W.F. (1986) Nucl. Acids Res. 14, 6983- 6999.
5] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605.