ISPmo5
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MN310371 | ND | Pseudomonas monteilii | Pseudomonas monteilii QJ20133 plasmid pJ20133-VIM |
DNA section
IS Length : 1235 bp
Ends
IR Length : 25bp
IRL : TGTAGTGGTCTACTAACCCCGGACACCTTTTTAGGCGAAAATGGTCGCCA
IRR : TGTAGTGGTCAACTAATCCCGGACACCGGATTAAGTTTTTCCTCGGCAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGCGGGGTC | GTC | GTCATGGCCC | 3 |
DNA sequence
TGTAGTGGTCTACTAACCCCGGACACCTTTTTAGGCGAAAATGGTCGCCACACAGAGGTGTTCGATGAGCAGACAACGACGTACTTTCACCCCCGAATTC
AAGCGCGAGGCAGCCGGCCTGGTGCTCGACCAGGGCTATAGCCTTACTGAAGCCGCCCGGTCGCTCGACTTGGTTGAATCGGCGCTGCGCCGCTGGGTGA
ATCAACTCCAGTCAGAACGTGGCGGTGCTACGCCAACGAGCAAGGCGCTGACCCCCGAGCAGCAGAAGATCCAAGAGTTGGAAGCTCGGATCAACCGGCT
GGAACGGGAGAAATCGATTTTAAAAAAGGCTACCGCGCTCTTGATGGCCGAGGAACACGAGCGCTCGCGTTGATTGATCAGCTCCGCCGCGAGGAGCCTG
TCGAATTACTCTGCTCGGTGTTTGAAGTCACTCGCTCGTGTTACTACGCGCATTGCCATAAACGGCGATCTCCGGACGTTGCGCGACTGGCACTGCGCGT
TCGGGTTAACGAGCTATTTACACAGAGCCGTAGTGCCGCAGGTAGTCGAACCATCATGTGCATGATGCGCCGAGAAGGCATTCAGATCGGCCGCTTCAAG
GTGCGCAAGTTGATGCGCGAAATGAAGCTGATCAGTAAGCAACCGGGTTCACATGCCTACAAGAAGGCCACAGTAGAGCGCCCTGACATCCCGAACGTGC
TGGAGCGCGCATTCGATGTTACGGCACCGAATCAAGTATGGTGCGGCGACATCACGTATGTGTGGGCTCAAGGCCAGTGGCACTATGTGGCGGCAGTTAT
CGACCTTTTTGCACGTCGCATGGTGGGCTGGGCGTTTTCACCCAAACCGGACAGCGAATTGGTCATCAAGGCGCTGGACATGGCGTACGAGCACCGCGGG
CGGCCGCAGAATGTACTGTTTCACAGTGATCAGGGCAGCCAGTATGGCAGCCGAGCTTTTCGTCAGCGGTTGTGGCGTTACCGCTTCAAGCAAAGCATGA
GCCGCAGAGGTAATTGCCTGGACAATGCGCCTATGGAGCGTTTGTTCCGCAGCCTGAAAACGGAGTGGGTGCCAAGTGTGGGCTACATGAGTGCTGCGCA
GGCACAGCAGGACATCGGCAGGTTTCTGATGCAGCGCTACAACTGGGAGCGACCGCATCAGTTCAACGGTGGGTTACCTCCGGCGATTGCCGAGGAAAAA
CTTAATCCGGTGTCCGGGATTAGTTGACCACTACA
AAGCGCGAGGCAGCCGGCCTGGTGCTCGACCAGGGCTATAGCCTTACTGAAGCCGCCCGGTCGCTCGACTTGGTTGAATCGGCGCTGCGCCGCTGGGTGA
ATCAACTCCAGTCAGAACGTGGCGGTGCTACGCCAACGAGCAAGGCGCTGACCCCCGAGCAGCAGAAGATCCAAGAGTTGGAAGCTCGGATCAACCGGCT
GGAACGGGAGAAATCGATTTTAAAAAAGGCTACCGCGCTCTTGATGGCCGAGGAACACGAGCGCTCGCGTTGATTGATCAGCTCCGCCGCGAGGAGCCTG
TCGAATTACTCTGCTCGGTGTTTGAAGTCACTCGCTCGTGTTACTACGCGCATTGCCATAAACGGCGATCTCCGGACGTTGCGCGACTGGCACTGCGCGT
TCGGGTTAACGAGCTATTTACACAGAGCCGTAGTGCCGCAGGTAGTCGAACCATCATGTGCATGATGCGCCGAGAAGGCATTCAGATCGGCCGCTTCAAG
GTGCGCAAGTTGATGCGCGAAATGAAGCTGATCAGTAAGCAACCGGGTTCACATGCCTACAAGAAGGCCACAGTAGAGCGCCCTGACATCCCGAACGTGC
TGGAGCGCGCATTCGATGTTACGGCACCGAATCAAGTATGGTGCGGCGACATCACGTATGTGTGGGCTCAAGGCCAGTGGCACTATGTGGCGGCAGTTAT
CGACCTTTTTGCACGTCGCATGGTGGGCTGGGCGTTTTCACCCAAACCGGACAGCGAATTGGTCATCAAGGCGCTGGACATGGCGTACGAGCACCGCGGG
CGGCCGCAGAATGTACTGTTTCACAGTGATCAGGGCAGCCAGTATGGCAGCCGAGCTTTTCGTCAGCGGTTGTGGCGTTACCGCTTCAAGCAAAGCATGA
GCCGCAGAGGTAATTGCCTGGACAATGCGCCTATGGAGCGTTTGTTCCGCAGCCTGAAAACGGAGTGGGTGCCAAGTGTGGGCTACATGAGTGCTGCGCA
GGCACAGCAGGACATCGGCAGGTTTCTGATGCAGCGCTACAACTGGGAGCGACCGCATCAGTTCAACGGTGGGTTACCTCCGGCGATTGCCGAGGAAAAA
CTTAATCCGGTGTCCGGGATTAGTTGACCACTACA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
309 bp | 102 aa | 65 | 373 | + | No |
Description : First part of the transposase
ORF sequence :
MSRQRRTFTPEFKREAAGLVLDQGYSLTEAARSLDLVESALRRWVNQLQSERGGATPTSKALTPEQQKIQELEARINRLEREKSILKKATALLMAEEHER
SR
SR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1070 bp | 349 aa | 158 | 1227 | + | No |
Description : Second part of the transposase
ORF sequence :
IGAAPLGESTPVRTWRCYANEQGADPRAAEDPRVGSSDQPAGTGEIDFKKGYRALDGRGTRALALIDQLRREEPVELLCSVFEVTRSCYYAHCHKRRSPD
VARLALRVRVNELFTQSRSAAGSRTIMCMMRREGIQIGRFKVRKLMREMKLISKQPGSHAYKKATVERPDIPNVLERAFDVTAPNQVWCGDITYVWAQGQ
WHYVAAVIDLFARRMVGWAFSPKPDSELVIKALDMAYEHRGRPQNVLFHSDQGSQYGSRAFRQRLWRYRFKQSMSRRGNCLDNAPMERLFRSLKTEWVPS
VGYMSAAQAQQDIGRFLMQRYNWERPHQFNGGLPPAIAEEKLNPVSGIS
VARLALRVRVNELFTQSRSAAGSRTIMCMMRREGIQIGRFKVRKLMREMKLISKQPGSHAYKKATVERPDIPNVLERAFDVTAPNQVWCGDITYVWAQGQ
WHYVAAVIDLFARRMVGWAFSPKPDSELVIKALDMAYEHRGRPQNVLFHSDQGSQYGSRAFRQRLWRYRFKQSMSRRGNCLDNAPMERLFRSLKTEWVPS
VGYMSAAQAQQDIGRFLMQRYNWERPHQFNGGLPPAIAEEKLNPVSGIS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1163 bp | 387 aa | 65 | 1227 | + | Yes |
Chemistry : DDE
ORF sequence :
MSRQRRTFTPEFKREAAGLVLDQGYSLTEAARSLDLVESALRRWVNQLQSERGGATPTSKALTPEQQKIQELEARINRLEREKSILKKGYRALDGRGTRA
LALIDQLRREEPVELLCSVFEVTRSCYYAHCHKRRSPDVARLALRVRVNELFTQSRSAAGSRTIMCMMRREGIQIGRFKVRKLMREMKLISKQPGSHAYK
KATVERPDIPNVLERAFDVTAPNQVWCGDITYVWAQGQWHYVAAVIDLFARRMVGWAFSPKPDSELVIKALDMAYEHRGRPQNVLFHSDQGSQYGSRAFR
QRLWRYRFKQSMSRRGNCLDNAPMERLFRSLKTEWVPSVGYMSAAQAQQDIGRFLMQRYNWERPHQFNGGLPPAIAEEKLNPVSGIS
LALIDQLRREEPVELLCSVFEVTRSCYYAHCHKRRSPDVARLALRVRVNELFTQSRSAAGSRTIMCMMRREGIQIGRFKVRKLMREMKLISKQPGSHAYK
KATVERPDIPNVLERAFDVTAPNQVWCGDITYVWAQGQWHYVAAVIDLFARRMVGWAFSPKPDSELVIKALDMAYEHRGRPQNVLFHSDQGSQYGSRAFR
QRLWRYRFKQSMSRRGNCLDNAPMERLFRSLKTEWVPSVGYMSAAQAQQDIGRFLMQRYNWERPHQFNGGLPPAIAEEKLNPVSGIS
Blast result :
Comments
ISPmo5 is 87% aa similar to ISPsy24.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Dongsheng Zhou (2020) Direct submission.
2] Zhou,D. and Chen,F. (2019) Direct GenBank submission.
2] Zhou,D. and Chen,F. (2019) Direct GenBank submission.