ISRe46
- Family IS481
- Group
Isoform Synonym(s) TnRErm46
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| KY494640 | Y | Rhodococcus equi | Rhodococcus equi Rhodococcus hoagii Rhodococcus hoagii PAM2350 plasmid pRErm46 |
DNA section
IS Length : 6907 bp
Ends
IR Length : 20/26
IRL : TGTTGCGGGTCATGACGTTGTTGACATCCGTTGCTCGGGACTGCCCCGCG
IRR : TGTATGAGGCCATGACGTTGGTGACACCGGCCTGAAGCTGGCTTGCAGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCAATACTCCGGCC | GCTAGA | GGTAACTGTTGTTGCA | 6 |
DNA sequence
TGTTGCGGGTCATGACGTTGTTGACATCCGTTGCTCGGGACTGCCCCGCGCTCCTGATCGGTGCCCGTTCACTACAACTACGGTCGATTCGATACTGTCG
CCAGGAATCGACCTTCCGTGATCCAACTCTGCACCGACGTCACCCACGCGGTAGACCCGGCACCGTCTCAGCGTGTCTGACCGTCGGAGGAGGATCCGGC
TTTGGACGTGATCGACGGCCTGTAGCGCAGTGGGCTCGCGCGATTGGTGGTCCTCGACCAGTTCGGGCCTGTCGATTGCGAGAGCGAACTCCGCGTCCAC
CCGTCCCGGCCTCGGGTCGACCAGCACGAGGTTGCCCCCCGGCGTGCTTGCCGTCGTCGAATACCCCTTACCCATACTCCTAATCCCCTCCTTTGCATTT
AGCAATGTGAGCCTGAGCGGGAGTCAGTCGCCGGTACCGGCGTTCTTGATCCGGTGGAGTTCGTCGCGGACGATGTCGAGAGCCCAGCCGATGTCATCGC
CGGCGCTCTGGTGGAGCAGGTGTAATCCGAGTCCGTCGACGAGCGCAAGCAGACGCCGGCCGCCCGTGCTGCTTGCCGGGGACGGCGCCGCTGTTTCACC
GCGGAGCATCGCTGCGATGCGGGTGAACAGGTCGAGGAGCTGCCTGTGGGCGTGATCTCGGATCCGCGCAAGACCCGGGTGTGCGGGAGTCTCTGCAATC
AGGGCCACGTTGATCTCGAACTCGCGGCGCGTCTCCGGCGTCAAGGGCATGAGCTCACAGATCGCGGCCAGCGCATACGCGACCGCGTCGGCGCTCGGGG
TGATCGCGGTGACTCGCGCGGCAGCGCGCTCGACCATGAGCTCGGCGGAGAACTCCAGCAGCTCCGCCTGGGTCGAGAAGAGGTTGCGCAGCGATCCGAC
CGCCATCCCGGCCTCGGCGGCGACCGTCCGCACCGACACCGCGCTGATGCCGCGTTCTGCAATGATCCGCCAGACGGCCTCGGCCAGCCGGGCTTTGCGT
TCCTCGCGCGGGGCGACAGCCGTCACCATTCCTCCTAGTACGATCGTGCCAACTGCTGGTTGGTACGACTGTACTAAGGGGGCGTCATGCAGGACCACGA
CACGAGGGCGGACGGGGCGGCGCGGTGATCTCCGCCGAGGCAGCGGGCGCCCTTGCGGTGTTGGCGCTCACCGACTCGTTGAGTTTCGGCACGCTCCTGG
TGCCGGTCTGGCTGCTGATGACGCCGGGGCGGGTGCGGCCGCACCGCATCCTGCTCTACCTGGGCACCGTCGCGGCGGTCTACTACGGGATCGGGATCGC
GCTCATGGCCGGCGGCCGGTTCGTGATCGACAGCGCTGCGGGGTTGCTGGACACCACCGCCGCGACCGCCGCACGACTGGTCGTCGGCGCCGCGCTGTTG
GCGGCCAGCTTCGCCCTCGACACGAAAGCCGCTCGTGCTCGCGCCGCCGAGCGCGCGCAACAGTCAGGACGACTGAACCGCTGGCGCGAGCGCGCCATGA
GCGACAGTTCGACATCCACCCTGGTCGGGCTCGCGGTCGCCGCAGTGGCCCTCGAGGTTGCGTCGATGCTGCCGTACCTCGTCGCGACCGGGACCATCGC
CGACCAGACTCCCGGCTGGTCCACAGCCTTGCTGGTGTTGGCGGGGTACTGCCTGGTGATGGTCGCACCTGCGCTGGTGCTCACCGCTGGACGGCTCGTG
GCCCGCTCCGCCGTCGAGGTACCACTGAAACGACTCGACACGTGGCTGACACGCAACGCTCGGACCACGACGCTGTGGATCATCGGTATCGCCGGATTCT
TCCTCGCCGCCACCGCGCTTCAAGACCTCGGCTGGGTACCGCGCTGACTCACAACGGCCGGTCCGACAACCACGTTGATGAAACCGCTGGCTATTCCCTA
TGCCGTGGTCATACCTCGATCTGTTCACCGTGGGCCTGTGAACGCGGCGACTCCCTCGCCGGTTCACCGCAAAGTCAATCGGACTCGGGCAGTCCCTCCG
CCAAATTCGATAGCGGTTCTGTGGTGCTTCCTCTACGGTTCCGTTTCATGTATGCAAGCACTGGATTCATGAAGCCGTGGTCGCTCCGCTGACGGCGGCG
ACTCGTATCTCATCGATCTCCTGAGGCCGCCGTCCGGGTAGTTAGGCCGGGCGGTACTTCGTGCTGTCCCGGCTCCATCCTCGAGCTGCGGAGAATCAGT
GTCTACACCCCACACGGGCCGAAGTGGCCTGCCCAACACACCTAGCCCTTCGAGCGAAAGCTCCTCTTCCACCGACCGATTGCCTGCTGGTGCACACGCG
CATATCCGGGCAACCTCGGTTCATGTCATTCTCGGGTCGCGGCCGATCCTGACGGACGTCTCCGTCACACTGTCAGCCCGCTCGCGGCTTGCGATCGTCG
GAGAGAACGGGCGCGGCAAGACCACACTGCTCCACGTTCTCGCGGGGCTGCTGCAGCCCGACAGCGGGACGGTCAGCCGCGTCGGCGCTGTCGGTGTGGC
GCAGCAGGCCATACCTTTTCGAAAAGGTGAGACCATCGGCACACTGGTCGCGGACACCGTCGAGCCTGCCCTGCAGGCATTGCGGGAACTCGACGCTGCG
ACGCTCTTGATCGCGGACGGAGCGCCGGGCGGCGACGACGCCTACGCGGCGGCGTTGGAATCAGCAACCAGACTCGAGGCCTGGGATACCGAACGCCGAG
TCGACGTCGCCCTCGAAGCGCTGCATGCGTGCACGGACCGGGAGCGACCACTTCACACGCTGTCCGTCGGACAACGCTATCGAGTCCGGCTGGCCTGCCT
GCTGGGCGCCACACACGACATCCTGCTGTTGGACGAGCCGACGAATCACCTCGACAGCGACGGACTGGACTTCCTCACCGATCGGCTGCGCACCCACTCC
GGCGGACTGGCCATCGTCAGTCACGACCGCGCGCTCCTGCATGATGTCGCCGACGAGTTCCTTGACCTGGACCCGAGCCAGAACGATCGGCCGCAACTCT
TCGCCGGAGGTTACGAGGGGTGGCAGGAGGGCCGTCGTCGGGCCCGCGACCGGTGGGAACACGAATACCAGGACCAACTCGCCGAACGAGCACGCCTTCA
AGAAGCTGTCGCCGGCGCGCGCGACCGACTCAGCACCGGTTGGAGACCCGAGAAGGGCCACGGCAAGCACCAGCGCCAATCCCGCGCACCAGGTCTGGTG
CAGGCTCTCAAGCGACGCCAATCAGACCTCGAAGCCCACACGATCACCGTGCCGGAACCGCCACTGCGACTGAGGTTCCCGGCTCTCACCGTCCGTTCCA
GCACGCCGCTACTCCGCTGCGACGGCATCACCGTGTCAGAGCGACTGAATACCCCCATCTCGTTCTCACTCGACGCAGGGGAACGTCTCCTGGTGACCGG
CCACAACGGCGCAGGCAAATCCACCCTGCTCGCCGTGCTGGCCGGCGACCTGGAACCGTCCACTGGCGGAATCCGCCACCATACGGCTGCCCGTGTCGCC
CTCGTCGGCCAGGAAGTGCCGGCATGGGAGGCCGAACTGACCGCGCAGGAACTCTACGACCGCCACATCCGGAGTCTCGATCTACACCACAGAATCGAAC
CGCTACCGCTGACATCGACCGGGCTGCTGGAGAAGCAATCTCAACGCACACCCATCGGGCGACTGTCGCAGGGGCAGCAGCGCAGACTTCATCTCGCGAT
GCAGCTCGCTTCCCGCCCCACAGTCCTCATCTGCGACGAACCCACCAACCACCTATCGGTATCCCTGGTCGATGAGCTCACCGCCGCACTGTCAAACACT
CCAGCGGCCGTAGTGGTAGCCACACACGACCGCCAGATGCTCACCGACCTCGCTGGCTGGCCCCGCCTGCACCTGATGGGAGATCGTCCATGACGCGGTA
GCACCCCCACTGGAGCGGGGCATAGGACCCGCACTCCGCCCTCGCCGGCAGGTGCGGGTTCTCCTGTTCTCACCCAGCTCATCGGCGTCGCCGGATTCTT
CCTCACTGCCACTGCCACTGCCACTGCCACTGCACTCCAAGACCTCGGCTGGGCCGCGCGGGAGTGTCAGATTTCCGGTGGATCCGGTTCTGGCGCATCG
GTTTAGTTCTCACTCGGGGTGATCCGGCCCTCGAACGTGATCGCGAACGCGTTCAGTGCCGGCTTCCACCTCATCGCTACGGTCGATTCGACATCGTCGC
CAGGAACCAGCCTTCCGTGATCCAACTCCGCACCGACGTCACCAACGCGGTGGGCTCACGGCGCAGCAAACAGCCGGAAACGGCGGCCACTGATGGCTTC
TGCCACCCGTTGGGCGCTGCGCTCTTCCGGTTCGTCCGACGTGTCGAGTGCATGGCTTTCGAGCTCGGCGAGGTCGGAGAACTGATCCCACATGGAGAGG
ATCGGCCCCTCGTCGATCAAAGCGTTCGGCGCGGTTCGGGCTTGGGCTCGCTGCAGCGTGATATCGCGCTGTGGCCGGAGCACAATGTAGTGGACCGCCA
GCTCCGGGTGCTGTGCTGCTCGGGTTCGGAAGTGGTCGAGCATCCACGGCCCCACGATTCCGTCGATCACCGTGGTGAAGCCGCCGAGCGCATAGGTATA
GGCGGCGCCAGCGATCACATCCATGACGGTCTGGTTCTGCGCATCGGACGCGGGTTCGTACGGGGGTATCGCACCCGAGACGATGAAGTGCCAGAAGTCG
TCCGTGTGCAGATGAACGCCCTTGCTGGAACAGCGGGCGAGCTTCGCGGCGAGGGTGGACTTGCCGGCCCCGGGTGGGCCGGTCAGGATGATCACGTGTC
CGGTCACGGACGACAAGCTACCTCCTATCCTCGTGCCTGAAGTACCCAATTTCTGCCGGCCGGGGGCCGCTGCCGCGGAGCCAAGTCCTATGGAGTCGAT
CTGCAACGAGTGATCCCGACTCGCATCCATGTTGTAGGGTGCGGCCGTGGGAAATACGAACATCGCAGTGACCGAGTTCCGCCGCTTCTAGCGGCGGAGA
GCGAACTTTCAAACACGCTCCGCCGCTTTCAGCACGTCAGTTGCTGGGCGGCGTCTTTGTGCTGCCCGGGCCACCCCACTATTGCCCGGAGTTCATACCC
CATGCCTACCTACCGTTCCGGCCGTCACGAGCTCGGCCAGAACTTCCTCACGGACCGCAAAGCAGTCGATACGATCGTCGACCTCGTTTCTCGAACAGAC
GGCCCGATCATCGAAATCGGCTCCGGCGGTGGGGCGTTGACATTGCCCCTGCAGGCGCTGCGTCGACCGATCACAGCTATCGAGATCGATCCGCGACATG
TGCAAAAGCTCCAACATCGCGTCGATCCGAGTACGACGGTCGTGCACGGCGACTTCCTGCGCTACCGACTGCCCCGAACACCGCACACCATCGTGGGGAA
CTTGCCGTTCCACCACACCACGGCGATGTTGCGGCGAATCCTCCACGCCGAACACTGGACAGCGTCGGTCCTGCTCGTGCAGTGGGAGGTTGCACGTCGT
CGTGCGGCGGTCGGTGGCGCAACGATGATGACTGCGCAATGGTGGCCGTGGTACGACTTCGGCCTGGCCGGCCGTGTTTCCGCATCGGCGTTCACACCAC
GGCCGGGAGTCGATGCAGGGCTGATGACCATCGCTCGGCGGACCGTTCCACTCGTCGACCCCGCGCTACGTCCCCGATACAGCACCTTCGTCCACACCGT
CTTCACCAGCAAGGGCCACGGCCTGCATCAGATCTTGCCGCGGGTGGCTGGCGATCCTGAGAAGGCCGCGGTTAAGAAGTGGCTCGCTGGCCAGCGATTT
CGAGGCACACCGCTGCCGCGCGACCTCTCACCCGGACAATGGTCCGAGCTCTTCGCGATCATCGATCGACGCTCTCCGGCTACCGATCGGAAGCGGGCTG
AGTACCGGCGATGACGCACCCCAACGCCCCGTTGTCTGTGGAAGGCCGTCGACGGCTCGTCGAGCGATGTCAGACTCGTCCGATCTCCCACGTCGCTGCC
GAGATGGGCATCTCCCGCGCCTGTGCCAGCAAATGGGTGCACCGCTACCGCGAGTTCGGTGAGAGCGGTCTGCTGGACCGCCCTAGCATCCCGCACCGCC
AGCCCACTGCCACCGCAGCGGAGGTCGTCACCCGGATCGAGCGCCTGCGCCGAGAGAAGAAATGGTCGGCCCGGCGCATCGCCCTCGAACTCGCCAATGA
CGGCGTCGTCATCTCGGTGCGGACCGTCAGCAGGCACCTGGCCCACCTCGGGTTGAACCGGCGCAGGTTCCTCGACCCGTCCGGTGAGAGCAACCGCGCA
CCACGACGGATCGTCGCCCGCTGGCCCGGCCACATGGTCCACGTCGACGTCAAGAAGGTCGGCCGCATCCCCGACGGCGGCGGTTGGCGTGCCCACGGCC
GCGGCAGCGACCACGCCAAGGCGGTCGACCGAGCAAAGACCGCCGGCGCCCGCGCCGGATACATCTACCTGCACTCGGCGATCGACGGGTTCTCCCGCCT
CGCCTACACCGAAGCTCTCACTGACGAGAGAGCTTCCACTGCAATCGCGTTCATGCACCGTGCCCGAGCGTTCTTCGCCGCCCACGGCATCGAACACATT
CACCGCATCGTCACCGACAACGGCGCCTGCTACCGCGCGAAAGACTTCGTCAAGGTGCTGCACGGAGCGAGGCATCAGCGGATCACCCCGTACACCCCGC
GCCACAACGGCAAAGTCGAGCGCTACAACAGGATCCTCGCCGAGGAGTTCCTCTACGCGCGCACCTGGACCAGCGAAACCCAACGCTCCGAGGCTCTGCA
GGTATGGAATATCCACTACAACTACCACCGGCCCCACACCTCACTCAGCGACCGGCCGCCTGCAAGCCAGCTTCAGGCCGGTGTCACCAACGTCATGGCC
TCATACA
CCAGGAATCGACCTTCCGTGATCCAACTCTGCACCGACGTCACCCACGCGGTAGACCCGGCACCGTCTCAGCGTGTCTGACCGTCGGAGGAGGATCCGGC
TTTGGACGTGATCGACGGCCTGTAGCGCAGTGGGCTCGCGCGATTGGTGGTCCTCGACCAGTTCGGGCCTGTCGATTGCGAGAGCGAACTCCGCGTCCAC
CCGTCCCGGCCTCGGGTCGACCAGCACGAGGTTGCCCCCCGGCGTGCTTGCCGTCGTCGAATACCCCTTACCCATACTCCTAATCCCCTCCTTTGCATTT
AGCAATGTGAGCCTGAGCGGGAGTCAGTCGCCGGTACCGGCGTTCTTGATCCGGTGGAGTTCGTCGCGGACGATGTCGAGAGCCCAGCCGATGTCATCGC
CGGCGCTCTGGTGGAGCAGGTGTAATCCGAGTCCGTCGACGAGCGCAAGCAGACGCCGGCCGCCCGTGCTGCTTGCCGGGGACGGCGCCGCTGTTTCACC
GCGGAGCATCGCTGCGATGCGGGTGAACAGGTCGAGGAGCTGCCTGTGGGCGTGATCTCGGATCCGCGCAAGACCCGGGTGTGCGGGAGTCTCTGCAATC
AGGGCCACGTTGATCTCGAACTCGCGGCGCGTCTCCGGCGTCAAGGGCATGAGCTCACAGATCGCGGCCAGCGCATACGCGACCGCGTCGGCGCTCGGGG
TGATCGCGGTGACTCGCGCGGCAGCGCGCTCGACCATGAGCTCGGCGGAGAACTCCAGCAGCTCCGCCTGGGTCGAGAAGAGGTTGCGCAGCGATCCGAC
CGCCATCCCGGCCTCGGCGGCGACCGTCCGCACCGACACCGCGCTGATGCCGCGTTCTGCAATGATCCGCCAGACGGCCTCGGCCAGCCGGGCTTTGCGT
TCCTCGCGCGGGGCGACAGCCGTCACCATTCCTCCTAGTACGATCGTGCCAACTGCTGGTTGGTACGACTGTACTAAGGGGGCGTCATGCAGGACCACGA
CACGAGGGCGGACGGGGCGGCGCGGTGATCTCCGCCGAGGCAGCGGGCGCCCTTGCGGTGTTGGCGCTCACCGACTCGTTGAGTTTCGGCACGCTCCTGG
TGCCGGTCTGGCTGCTGATGACGCCGGGGCGGGTGCGGCCGCACCGCATCCTGCTCTACCTGGGCACCGTCGCGGCGGTCTACTACGGGATCGGGATCGC
GCTCATGGCCGGCGGCCGGTTCGTGATCGACAGCGCTGCGGGGTTGCTGGACACCACCGCCGCGACCGCCGCACGACTGGTCGTCGGCGCCGCGCTGTTG
GCGGCCAGCTTCGCCCTCGACACGAAAGCCGCTCGTGCTCGCGCCGCCGAGCGCGCGCAACAGTCAGGACGACTGAACCGCTGGCGCGAGCGCGCCATGA
GCGACAGTTCGACATCCACCCTGGTCGGGCTCGCGGTCGCCGCAGTGGCCCTCGAGGTTGCGTCGATGCTGCCGTACCTCGTCGCGACCGGGACCATCGC
CGACCAGACTCCCGGCTGGTCCACAGCCTTGCTGGTGTTGGCGGGGTACTGCCTGGTGATGGTCGCACCTGCGCTGGTGCTCACCGCTGGACGGCTCGTG
GCCCGCTCCGCCGTCGAGGTACCACTGAAACGACTCGACACGTGGCTGACACGCAACGCTCGGACCACGACGCTGTGGATCATCGGTATCGCCGGATTCT
TCCTCGCCGCCACCGCGCTTCAAGACCTCGGCTGGGTACCGCGCTGACTCACAACGGCCGGTCCGACAACCACGTTGATGAAACCGCTGGCTATTCCCTA
TGCCGTGGTCATACCTCGATCTGTTCACCGTGGGCCTGTGAACGCGGCGACTCCCTCGCCGGTTCACCGCAAAGTCAATCGGACTCGGGCAGTCCCTCCG
CCAAATTCGATAGCGGTTCTGTGGTGCTTCCTCTACGGTTCCGTTTCATGTATGCAAGCACTGGATTCATGAAGCCGTGGTCGCTCCGCTGACGGCGGCG
ACTCGTATCTCATCGATCTCCTGAGGCCGCCGTCCGGGTAGTTAGGCCGGGCGGTACTTCGTGCTGTCCCGGCTCCATCCTCGAGCTGCGGAGAATCAGT
GTCTACACCCCACACGGGCCGAAGTGGCCTGCCCAACACACCTAGCCCTTCGAGCGAAAGCTCCTCTTCCACCGACCGATTGCCTGCTGGTGCACACGCG
CATATCCGGGCAACCTCGGTTCATGTCATTCTCGGGTCGCGGCCGATCCTGACGGACGTCTCCGTCACACTGTCAGCCCGCTCGCGGCTTGCGATCGTCG
GAGAGAACGGGCGCGGCAAGACCACACTGCTCCACGTTCTCGCGGGGCTGCTGCAGCCCGACAGCGGGACGGTCAGCCGCGTCGGCGCTGTCGGTGTGGC
GCAGCAGGCCATACCTTTTCGAAAAGGTGAGACCATCGGCACACTGGTCGCGGACACCGTCGAGCCTGCCCTGCAGGCATTGCGGGAACTCGACGCTGCG
ACGCTCTTGATCGCGGACGGAGCGCCGGGCGGCGACGACGCCTACGCGGCGGCGTTGGAATCAGCAACCAGACTCGAGGCCTGGGATACCGAACGCCGAG
TCGACGTCGCCCTCGAAGCGCTGCATGCGTGCACGGACCGGGAGCGACCACTTCACACGCTGTCCGTCGGACAACGCTATCGAGTCCGGCTGGCCTGCCT
GCTGGGCGCCACACACGACATCCTGCTGTTGGACGAGCCGACGAATCACCTCGACAGCGACGGACTGGACTTCCTCACCGATCGGCTGCGCACCCACTCC
GGCGGACTGGCCATCGTCAGTCACGACCGCGCGCTCCTGCATGATGTCGCCGACGAGTTCCTTGACCTGGACCCGAGCCAGAACGATCGGCCGCAACTCT
TCGCCGGAGGTTACGAGGGGTGGCAGGAGGGCCGTCGTCGGGCCCGCGACCGGTGGGAACACGAATACCAGGACCAACTCGCCGAACGAGCACGCCTTCA
AGAAGCTGTCGCCGGCGCGCGCGACCGACTCAGCACCGGTTGGAGACCCGAGAAGGGCCACGGCAAGCACCAGCGCCAATCCCGCGCACCAGGTCTGGTG
CAGGCTCTCAAGCGACGCCAATCAGACCTCGAAGCCCACACGATCACCGTGCCGGAACCGCCACTGCGACTGAGGTTCCCGGCTCTCACCGTCCGTTCCA
GCACGCCGCTACTCCGCTGCGACGGCATCACCGTGTCAGAGCGACTGAATACCCCCATCTCGTTCTCACTCGACGCAGGGGAACGTCTCCTGGTGACCGG
CCACAACGGCGCAGGCAAATCCACCCTGCTCGCCGTGCTGGCCGGCGACCTGGAACCGTCCACTGGCGGAATCCGCCACCATACGGCTGCCCGTGTCGCC
CTCGTCGGCCAGGAAGTGCCGGCATGGGAGGCCGAACTGACCGCGCAGGAACTCTACGACCGCCACATCCGGAGTCTCGATCTACACCACAGAATCGAAC
CGCTACCGCTGACATCGACCGGGCTGCTGGAGAAGCAATCTCAACGCACACCCATCGGGCGACTGTCGCAGGGGCAGCAGCGCAGACTTCATCTCGCGAT
GCAGCTCGCTTCCCGCCCCACAGTCCTCATCTGCGACGAACCCACCAACCACCTATCGGTATCCCTGGTCGATGAGCTCACCGCCGCACTGTCAAACACT
CCAGCGGCCGTAGTGGTAGCCACACACGACCGCCAGATGCTCACCGACCTCGCTGGCTGGCCCCGCCTGCACCTGATGGGAGATCGTCCATGACGCGGTA
GCACCCCCACTGGAGCGGGGCATAGGACCCGCACTCCGCCCTCGCCGGCAGGTGCGGGTTCTCCTGTTCTCACCCAGCTCATCGGCGTCGCCGGATTCTT
CCTCACTGCCACTGCCACTGCCACTGCCACTGCACTCCAAGACCTCGGCTGGGCCGCGCGGGAGTGTCAGATTTCCGGTGGATCCGGTTCTGGCGCATCG
GTTTAGTTCTCACTCGGGGTGATCCGGCCCTCGAACGTGATCGCGAACGCGTTCAGTGCCGGCTTCCACCTCATCGCTACGGTCGATTCGACATCGTCGC
CAGGAACCAGCCTTCCGTGATCCAACTCCGCACCGACGTCACCAACGCGGTGGGCTCACGGCGCAGCAAACAGCCGGAAACGGCGGCCACTGATGGCTTC
TGCCACCCGTTGGGCGCTGCGCTCTTCCGGTTCGTCCGACGTGTCGAGTGCATGGCTTTCGAGCTCGGCGAGGTCGGAGAACTGATCCCACATGGAGAGG
ATCGGCCCCTCGTCGATCAAAGCGTTCGGCGCGGTTCGGGCTTGGGCTCGCTGCAGCGTGATATCGCGCTGTGGCCGGAGCACAATGTAGTGGACCGCCA
GCTCCGGGTGCTGTGCTGCTCGGGTTCGGAAGTGGTCGAGCATCCACGGCCCCACGATTCCGTCGATCACCGTGGTGAAGCCGCCGAGCGCATAGGTATA
GGCGGCGCCAGCGATCACATCCATGACGGTCTGGTTCTGCGCATCGGACGCGGGTTCGTACGGGGGTATCGCACCCGAGACGATGAAGTGCCAGAAGTCG
TCCGTGTGCAGATGAACGCCCTTGCTGGAACAGCGGGCGAGCTTCGCGGCGAGGGTGGACTTGCCGGCCCCGGGTGGGCCGGTCAGGATGATCACGTGTC
CGGTCACGGACGACAAGCTACCTCCTATCCTCGTGCCTGAAGTACCCAATTTCTGCCGGCCGGGGGCCGCTGCCGCGGAGCCAAGTCCTATGGAGTCGAT
CTGCAACGAGTGATCCCGACTCGCATCCATGTTGTAGGGTGCGGCCGTGGGAAATACGAACATCGCAGTGACCGAGTTCCGCCGCTTCTAGCGGCGGAGA
GCGAACTTTCAAACACGCTCCGCCGCTTTCAGCACGTCAGTTGCTGGGCGGCGTCTTTGTGCTGCCCGGGCCACCCCACTATTGCCCGGAGTTCATACCC
CATGCCTACCTACCGTTCCGGCCGTCACGAGCTCGGCCAGAACTTCCTCACGGACCGCAAAGCAGTCGATACGATCGTCGACCTCGTTTCTCGAACAGAC
GGCCCGATCATCGAAATCGGCTCCGGCGGTGGGGCGTTGACATTGCCCCTGCAGGCGCTGCGTCGACCGATCACAGCTATCGAGATCGATCCGCGACATG
TGCAAAAGCTCCAACATCGCGTCGATCCGAGTACGACGGTCGTGCACGGCGACTTCCTGCGCTACCGACTGCCCCGAACACCGCACACCATCGTGGGGAA
CTTGCCGTTCCACCACACCACGGCGATGTTGCGGCGAATCCTCCACGCCGAACACTGGACAGCGTCGGTCCTGCTCGTGCAGTGGGAGGTTGCACGTCGT
CGTGCGGCGGTCGGTGGCGCAACGATGATGACTGCGCAATGGTGGCCGTGGTACGACTTCGGCCTGGCCGGCCGTGTTTCCGCATCGGCGTTCACACCAC
GGCCGGGAGTCGATGCAGGGCTGATGACCATCGCTCGGCGGACCGTTCCACTCGTCGACCCCGCGCTACGTCCCCGATACAGCACCTTCGTCCACACCGT
CTTCACCAGCAAGGGCCACGGCCTGCATCAGATCTTGCCGCGGGTGGCTGGCGATCCTGAGAAGGCCGCGGTTAAGAAGTGGCTCGCTGGCCAGCGATTT
CGAGGCACACCGCTGCCGCGCGACCTCTCACCCGGACAATGGTCCGAGCTCTTCGCGATCATCGATCGACGCTCTCCGGCTACCGATCGGAAGCGGGCTG
AGTACCGGCGATGACGCACCCCAACGCCCCGTTGTCTGTGGAAGGCCGTCGACGGCTCGTCGAGCGATGTCAGACTCGTCCGATCTCCCACGTCGCTGCC
GAGATGGGCATCTCCCGCGCCTGTGCCAGCAAATGGGTGCACCGCTACCGCGAGTTCGGTGAGAGCGGTCTGCTGGACCGCCCTAGCATCCCGCACCGCC
AGCCCACTGCCACCGCAGCGGAGGTCGTCACCCGGATCGAGCGCCTGCGCCGAGAGAAGAAATGGTCGGCCCGGCGCATCGCCCTCGAACTCGCCAATGA
CGGCGTCGTCATCTCGGTGCGGACCGTCAGCAGGCACCTGGCCCACCTCGGGTTGAACCGGCGCAGGTTCCTCGACCCGTCCGGTGAGAGCAACCGCGCA
CCACGACGGATCGTCGCCCGCTGGCCCGGCCACATGGTCCACGTCGACGTCAAGAAGGTCGGCCGCATCCCCGACGGCGGCGGTTGGCGTGCCCACGGCC
GCGGCAGCGACCACGCCAAGGCGGTCGACCGAGCAAAGACCGCCGGCGCCCGCGCCGGATACATCTACCTGCACTCGGCGATCGACGGGTTCTCCCGCCT
CGCCTACACCGAAGCTCTCACTGACGAGAGAGCTTCCACTGCAATCGCGTTCATGCACCGTGCCCGAGCGTTCTTCGCCGCCCACGGCATCGAACACATT
CACCGCATCGTCACCGACAACGGCGCCTGCTACCGCGCGAAAGACTTCGTCAAGGTGCTGCACGGAGCGAGGCATCAGCGGATCACCCCGTACACCCCGC
GCCACAACGGCAAAGTCGAGCGCTACAACAGGATCCTCGCCGAGGAGTTCCTCTACGCGCGCACCTGGACCAGCGAAACCCAACGCTCCGAGGCTCTGCA
GGTATGGAATATCCACTACAACTACCACCGGCCCCACACCTCACTCAGCGACCGGCCGCCTGCAAGCCAGCTTCAGGCCGGTGTCACCAACGTCATGGCC
TCATACA
Protein section
ORF number : 7
ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 603 bp | 200 aa | 1026 | 424 | - | No |
Annotation : TetR Tetracycline repressor protein class ADescription : Antibiotic resistance
ORF sequence :
MTAVAPREERKARLAEAVWRIIAERGISAVSVRTVAAEAGMAVGSLRNLFSTQAELLEFSAELMVERAAARVTAITPSADAVAYALAAICELMPLTPETR
REFEINVALIAETPAHPGLARIRDHAHRQLLDLFTRIAAMLRGETAAPSPASSTGGRRLLALVDGLGLHLLHQSAGDDIGWALDIVRDELHRIKNAGTGD
REFEINVALIAETPAHPGLARIRDHAHRQLLDLFTRIAAMLRGETAAPSPASSTGGRRLLALVDGLGLHLLHQSAGDDIGWALDIVRDELHRIKNAGTGD
Blast result :ORF 6
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 813 bp | 270 aa | 5102 | 5914 | - | No |
Annotation : Erm(46)rRNA methyltransferaseDescription : Antibiotic resistance
ORF sequence :
MPTYRSGRHELGQNFLTDRKAVDTIVDLVSRTDGPIIEIGSGGGALTLPLQALRRPITAIEIDPRHVQKLQHRVDPSTTVVHGDFLRYRLPRTPHTIVGN
LPFHHTTAMLRRILHAEHWTASVLLVQWEVARRRAAVGGATMMTAQWWPWYDFGLAGRVSASAFTPRPGVDAGLMTIARRTVPLVDPALRPRYSTFVHTV
FTSKGHGLHQILPRVAGDPEKAAVKKWLAGQRFRGTPLPRDLSPGQWSELFAIIDRRSPATDRKRAEYRR
LPFHHTTAMLRRILHAEHWTASVLLVQWEVARRRAAVGGATMMTAQWWPWYDFGLAGRVSASAFTPRPGVDAGLMTIARRTVPLVDPALRPRYSTFVHTV
FTSKGHGLHQILPRVAGDPEKAAVKKWLAGQRFRGTPLPRDLSPGQWSELFAIIDRRSPATDRKRAEYRR
Blast result :ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 366 bp | 121 aa | 375 | 10 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGKGYSTTASTPGGNLVLVDPRPGRVDAEFALAIDRPELVEDHQSREPTALQAVDHVQSRILLRRSDTLRRCRVYRVGDVGAELDHGRSIPGDSIESTVV
VVNGHRSGARGSPEQRMSTTS
VVNGHRSGARGSPEQRMSTTS
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 723 bp | 240 aa | 1125 | 1847 | + | No |
Annotation : Putative membrane proteinDescription :
ORF sequence :
MISAEAAGALAVLALTDSLSFGTLLVPVWLLMTPGRVRPHRILLYLGTVAAVYYGIGIALMAGGRFVIDSAAGLLDTTAATAARLVVGAALLAASFALDT
KAARARAAERAQQSGRLNRWRERAMSDSSTSTLVGLAVAAVALEVASMLPYLVATGTIADQTPGWSTALLVLAGYCLVMVAPALVLTAGRLVARSAVEVP
LKRLDTWLTRNARTTTLWIIGIAGFFLAATALQDLGWVPR
KAARARAAERAQQSGRLNRWRERAMSDSSTSTLVGLAVAAVALEVASMLPYLVATGTIADQTPGWSTALLVLAGYCLVMVAPALVLTAGRLVARSAVEVP
LKRLDTWLTRNARTTTLWIIGIAGFFLAATALQDLGWVPR
Blast result :ORF 4
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1695 bp | 564 aa | 2199 | 3893 | + | No |
Annotation : Putative ABC transporter ATP-binding proteinDescription :
ORF sequence :
MSTPHTGRSGLPNTPSPSSESSSSTDRLPAGAHAHIRATSVHVILGSRPILTDVSVTLSARSRLAIVGENGRGKTTLLHVLAGLLQPDSGTVSRVGAVGV
AQQAIPFRKGETIGTLVADTVEPALQALRELDAATLLIADGAPGGDDAYAAALESATRLEAWDTERRVDVALEALHACTDRERPLHTLSVGQRYRVRLAC
LLGATHDILLLDEPTNHLDSDGLDFLTDRLRTHSGGLAIVSHDRALLHDVADEFLDLDPSQNDRPQLFAGGYEGWQEGRRRARDRWEHEYQDQLAERARL
QEAVAGARDRLSTGWRPEKGHGKHQRQSRAPGLVQALKRRQSDLEAHTITVPEPPLRLRFPALTVRSSTPLLRCDGITVSERLNTPISFSLDAGERLLVT
GHNGAGKSTLLAVLAGDLEPSTGGIRHHTAARVALVGQEVPAWEAELTAQELYDRHIRSLDLHHRIEPLPLTSTGLLEKQSQRTPIGRLSQGQQRRLHLA
MQLASRPTVLICDEPTNHLSVSLVDELTAALSNTPAAVVVATHDRQMLTDLAGWPRLHLMGDRP
AQQAIPFRKGETIGTLVADTVEPALQALRELDAATLLIADGAPGGDDAYAAALESATRLEAWDTERRVDVALEALHACTDRERPLHTLSVGQRYRVRLAC
LLGATHDILLLDEPTNHLDSDGLDFLTDRLRTHSGGLAIVSHDRALLHDVADEFLDLDPSQNDRPQLFAGGYEGWQEGRRRARDRWEHEYQDQLAERARL
QEAVAGARDRLSTGWRPEKGHGKHQRQSRAPGLVQALKRRQSDLEAHTITVPEPPLRLRFPALTVRSSTPLLRCDGITVSERLNTPISFSLDAGERLLVT
GHNGAGKSTLLAVLAGDLEPSTGGIRHHTAARVALVGQEVPAWEAELTAQELYDRHIRSLDLHHRIEPLPLTSTGLLEKQSQRTPIGRLSQGQQRRLHLA
MQLASRPTVLICDEPTNHLSVSLVDELTAALSNTPAAVVVATHDRQMLTDLAGWPRLHLMGDRP
Blast result :ORF 5
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 561 bp | 186 aa | 4816 | 4256 | - | No |
Annotation : ATPaseDescription :
ORF sequence :
MSSVTGHVIILTGPPGAGKSTLAAKLARCSSKGVHLHTDDFWHFIVSGAIPPYEPASDAQNQTVMDVIAGAAYTYALGGFTTVIDGIVGPWMLDHFRTRA
AQHPELAVHYIVLRPQRDITLQRAQARTAPNALIDEGPILSMWDQFSDLAELESHALDTSDEPEERSAQRVAEAISGRRFRLFAAP
AQHPELAVHYIVLRPQRDITLQRAQARTAPNALIDEGPILSMWDQFSDLAELESHALDTSDEPEERSAQRVAEAISGRRFRLFAAP
Blast result :ORF 7
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1002 bp | 333 aa | 5911 | 6912 | + | No |
Chemistry : DDE
ORF sequence :
MTHPNAPLSVEGRRRLVERCQTRPISHVAAEMGISRACASKWVHRYREFGESGLLDRPSIPHRQPTATAAEVVTRIERLRREKKWSARRIALELANDGVV
ISVRTVSRHLAHLGLNRRRFLDPSGESNRAPRRIVARWPGHMVHVDVKKVGRIPDGGGWRAHGRGSDHAKAVDRAKTAGARAGYIYLHSAIDGFSRLAYT
EALTDERASTAIAFMHRARAFFAAHGIEHIHRIVTDNGACYRAKDFVKVLHGARHQRITPYTPRHNGKVERYNRILAEEFLYARTWTSETQRSEALQVWN
IHYNYHRPHTSLSDRPPASQLQAGVTNVMASYS
ISVRTVSRHLAHLGLNRRRFLDPSGESNRAPRRIVARWPGHMVHVDVKKVGRIPDGGGWRAHGRGSDHAKAVDRAKTAGARAGYIYLHSAIDGFSRLAYT
EALTDERASTAIAFMHRARAFFAAHGIEHIHRIVTDNGACYRAKDFVKVLHGARHQRITPYTPRHNGKVERYNRILAEEFLYARTWTSETQRSEALQVWN
IHYNYHRPHTSLSDRPPASQLQAGVTNVMASYS
Blast result :
Comments
ISRe46 is 91% aa (transposase) similar to ISRae1.
In the publication, notice that only the transposase is named ISRe46, this is confusing. According to the nomenclature, the name is attributed to the insertion sequence, so we designated all the sequence as ISRe46 and add TnRErm46 as synonym.
In the publication, notice that only the transposase is named ISRe46, this is confusing. According to the nomenclature, the name is attributed to the insertion sequence, so we designated all the sequence as ISRe46 and add TnRErm46 as synonym.
References