ISSaco2

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT897828.1 ND Salinovibrio costicola
Salinovibrio costicola PRJEB21454
DNA section
IS Length : 2197 bp

Ends


oriIS : GAAGCCGCTATGCGGCAGAATGTCGCCTTACCGCCTATGTTTCTTCCTACTCTGCCAATCAGCAGTAAACAGGAGAAACACCATGACCCCTCTACAACAA II struct. : No
terIS : AGTGATGTCTTATCTGCTCACTTCTTGGCTGCGCTCGCGCTGAAAAAAGTGCCAGACGCAGCGCCTACCTATGCGCATTCGAGCTATTTACTTAATAAAG II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCTTTAACGACTTGTT GAACCAAC GGGCTTGTTCAACACC

DNA sequence

GAAGCCGCTATGCGGCAGAATGTCGCCTTACCGCCTATGTTTCTTCCTACTCTGCCAATCAGCAGTAAACAGGAGAAACACCATGACCCCTCTACAACAA
CGCCACTTCGGTGCCCTTTATCAACAGCACCTCGACAACTTAACGCTTCAAGGCAAACGTCCCGCCACCATTGATGCTTATGCCCGTGCCGTTCGACGTA
TCGCCGAATTCTTCGATTCTCCCCCTGACAATCTCTCCCAGCAACAACTCAAAACCTACTTTGTGCGCCTTATCGCTTCTCACTCTTGGAGTACGGTTAA
GCTCGACCGCAATGGCTTGCAGTTTTTCTATCGCTATACCCTCAATAAACAGTGGCAATGGCTCGATATCGTCAAGCCTCCGCAAGTGAAGCGCCTGCCT
GATATTTTAACCCCCAACGAAGTCGGCTTACTCATCACTCTCACCCGACAACCTCGCTACCAACGCTTTTTCTATACCCTTTATTGTCTGGGGCTGCGAT
TAGGAGAAGGACTGCAGCTGACAGTGAGCGATATCGATAGCGCTAACCATCAAGTACATGTGCGTCATGCCAAAGGGGGTAAAGACCGACTCGTGCCGCT
CCCAGATAACACCCTCTCTGTGTTGCGCCAATACTGGCGCACCCATCGCCATCCAACCTTGCTCTTTCCCGGTGTCGGGAATGATGGCCCAATGGACCGC
GGTGGCGTGCAGAAAGCCATGAAGCAGGTCTGTCGTGATGCCGGTATTCACAAGACCATCAGTCCCCATTCATTACGTCATTGCTATGCGACGCATTTAC
TCCAACAAGGCCTGGATTTACGGTCTCTACAACGCCTTTTGGGGCATGCCAGTCTCACGACAACGGCACGTTATACGCAACTCACCGACGTCAAACACGC
CCAGCTTCATCAGGCAGTAAATCGACTCGCATCCGGACTCACGATTCTGTGGGAGGCAACATGAGTACGTTTATTCAACTGTTGCAACAACATACCGAGA
CGATGCCGACTCATTCGATGACGCCTGATATCGCTCGGGCCATCTCCGCGATGACCCGTTGCCGGACAGGCGCATTGGGTCAATCTCAATGGGCCTGTCA
GGGCTGTCACTATGACGAGCGAACGCCGCTCTCTTGTGGCCATCGCCATTGCCCCCAATGCCAACATCCCAACACAGTACAATGGCTAGAAAGGCAAACC
ACCAAGTTGTTGCCAACCACGTATTTTATGGTGACCTTCACCTTACCTGCGACGTTGCGTCACTTGGCTCATATGCAAGCAAAAAGCTTGTATGCATTGA
TGTTCTCTGTCGCCGCGTCAGTCCTGAAAGACTTCGCTCAGCGTAAACATGGCGCAGACAGTGGCTTTACGCTGGTACTACACACGCATAACCGACGACG
GGATATGCACCCACACTTGCATGCGATTGTGCCCGCAGGCTTTTACCACCCAACGCGTAAGCAATGGCACAAGGGCAATAAACAGTATCTTTATCCGCAC
GCAGCATTGGCCTCCGTCTGGCGGGCAAGGGTGCTCGCCGCCATTAACGCACACCCCGTGCTCTCACTGCCTCCTTCTGTACCGAAGACATGGGTAGTGG
ATTGCCGTGCAGTCGGACGCGGTCTACCCGCGTTAAAATATCTATCACGCTACTTGTATCGCGGCGTTTTGCCCGACAAAGATATCATCGACATCAGTGA
CCACCAGGTGACCTTCCGGTACACCGACAGCCAAACAAATCAATCGACGACCCGCTCGCTGCCTACCAATCAGTTCCTGATGTTAATACTTCAGCATGTC
TTACCCAAAGGGCTACAACGCGTGCGTGACTATGGCTTATTGCATGGCAGCGCCAAACACAAGCGATACCATATTCAACGTATGTTGCTTCACATGGCAC
ACCAGACCTTGCCCGTTGAGGCGGCCCCTGAGCAGCATACGACACGATGTTGTCCTACATGCGGGGAGCGGCTCATGGTCTGCGTGGGCGTGACACGACC
GAGGTAGCCGAAAGGCGAACAGAATAAGGAGAATGGCGTTCACTTAAACACAGGAGAAACAAACCTACAAAACCACATCGTTAACATAACGTATTGAAGT
GATGTCTTATCTGCTCACTTCTTGGCTGCGCTCGCGCTGAAAAAAGTGCCAGACGCAGCGCCTACCTATGCGCATTCGAGCTATTTACTTAATAAAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
882 bp293 aa83964+No
ORF function : Accessory Gene
AG : IS91 integrase/resolvase

ORF sequence :

MTPLQQRHFGALYQQHLDNLTLQGKRPATIDAYARAVRRIAEFFDSPPDNLSQQQLKTYFVRLIASHSWSTVKLDRNGLQFFYRYTLNKQWQWLDIVKPP
QVKRLPDILTPNEVGLLITLTRQPRYQRFFYTLYCLGLRLGEGLQLTVSDIDSANHQVHVRHAKGGKDRLVPLPDNTLSVLRQYWRTHRHPTLLFPGVGN
DGPMDRGGVQKAMKQVCRDAGIHKTISPHSLRHCYATHLLQQGLDLRSLQRLLGHASLTTTARYTQLTDVKHAQLHQAVNRLASGLTILWEAT

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1047 bp348 aa9612007+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MSTFIQLLQQHTETMPTHSMTPDIARAISAMTRCRTGALGQSQWACQGCHYDERTPLSCGHRHCPQCQHPNTVQWLERQTTKLLPTTYFMVTFTLPATLR
HLAHMQAKSLYALMFSVAASVLKDFAQRKHGADSGFTLVLHTHNRRRDMHPHLHAIVPAGFYHPTRKQWHKGNKQYLYPHAALASVWRARVLAAINAHPV
LSLPPSVPKTWVVDCRAVGRGLPALKYLSRYLYRGVLPDKDIIDISDHQVTFRYTDSQTNQSTTRSLPTNQFLMLILQHVLPKGLQRVRDYGLLHGSAKH
KRYHIQRMLLHMAHQTLPVEAAPEQHTTRCCPTCGERLMVCVGVTRPR

 

Blast result :
Comments
ISMahy13 is 66% aa (transposase) similar to ISShvi3
References