ISSaco2
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT897828.1 | ND | Salinovibrio costicola | Salinovibrio costicola PRJEB21454 |
DNA section
IS Length : 2197 bp
Ends
oriIS : GAAGCCGCTATGCGGCAGAATGTCGCCTTACCGCCTATGTTTCTTCCTACTCTGCCAATCAGCAGTAAACAGGAGAAACACCATGACCCCTCTACAACAA II struct. : No
terIS : AGTGATGTCTTATCTGCTCACTTCTTGGCTGCGCTCGCGCTGAAAAAAGTGCCAGACGCAGCGCCTACCTATGCGCATTCGAGCTATTTACTTAATAAAG II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCTTTAACGACTTGTT GAAC | CAAC GGGCTTGTTCAACACC |
DNA sequence
GAAGCCGCTATGCGGCAGAATGTCGCCTTACCGCCTATGTTTCTTCCTACTCTGCCAATCAGCAGTAAACAGGAGAAACACCATGACCCCTCTACAACAA
CGCCACTTCGGTGCCCTTTATCAACAGCACCTCGACAACTTAACGCTTCAAGGCAAACGTCCCGCCACCATTGATGCTTATGCCCGTGCCGTTCGACGTA
TCGCCGAATTCTTCGATTCTCCCCCTGACAATCTCTCCCAGCAACAACTCAAAACCTACTTTGTGCGCCTTATCGCTTCTCACTCTTGGAGTACGGTTAA
GCTCGACCGCAATGGCTTGCAGTTTTTCTATCGCTATACCCTCAATAAACAGTGGCAATGGCTCGATATCGTCAAGCCTCCGCAAGTGAAGCGCCTGCCT
GATATTTTAACCCCCAACGAAGTCGGCTTACTCATCACTCTCACCCGACAACCTCGCTACCAACGCTTTTTCTATACCCTTTATTGTCTGGGGCTGCGAT
TAGGAGAAGGACTGCAGCTGACAGTGAGCGATATCGATAGCGCTAACCATCAAGTACATGTGCGTCATGCCAAAGGGGGTAAAGACCGACTCGTGCCGCT
CCCAGATAACACCCTCTCTGTGTTGCGCCAATACTGGCGCACCCATCGCCATCCAACCTTGCTCTTTCCCGGTGTCGGGAATGATGGCCCAATGGACCGC
GGTGGCGTGCAGAAAGCCATGAAGCAGGTCTGTCGTGATGCCGGTATTCACAAGACCATCAGTCCCCATTCATTACGTCATTGCTATGCGACGCATTTAC
TCCAACAAGGCCTGGATTTACGGTCTCTACAACGCCTTTTGGGGCATGCCAGTCTCACGACAACGGCACGTTATACGCAACTCACCGACGTCAAACACGC
CCAGCTTCATCAGGCAGTAAATCGACTCGCATCCGGACTCACGATTCTGTGGGAGGCAACATGAGTACGTTTATTCAACTGTTGCAACAACATACCGAGA
CGATGCCGACTCATTCGATGACGCCTGATATCGCTCGGGCCATCTCCGCGATGACCCGTTGCCGGACAGGCGCATTGGGTCAATCTCAATGGGCCTGTCA
GGGCTGTCACTATGACGAGCGAACGCCGCTCTCTTGTGGCCATCGCCATTGCCCCCAATGCCAACATCCCAACACAGTACAATGGCTAGAAAGGCAAACC
ACCAAGTTGTTGCCAACCACGTATTTTATGGTGACCTTCACCTTACCTGCGACGTTGCGTCACTTGGCTCATATGCAAGCAAAAAGCTTGTATGCATTGA
TGTTCTCTGTCGCCGCGTCAGTCCTGAAAGACTTCGCTCAGCGTAAACATGGCGCAGACAGTGGCTTTACGCTGGTACTACACACGCATAACCGACGACG
GGATATGCACCCACACTTGCATGCGATTGTGCCCGCAGGCTTTTACCACCCAACGCGTAAGCAATGGCACAAGGGCAATAAACAGTATCTTTATCCGCAC
GCAGCATTGGCCTCCGTCTGGCGGGCAAGGGTGCTCGCCGCCATTAACGCACACCCCGTGCTCTCACTGCCTCCTTCTGTACCGAAGACATGGGTAGTGG
ATTGCCGTGCAGTCGGACGCGGTCTACCCGCGTTAAAATATCTATCACGCTACTTGTATCGCGGCGTTTTGCCCGACAAAGATATCATCGACATCAGTGA
CCACCAGGTGACCTTCCGGTACACCGACAGCCAAACAAATCAATCGACGACCCGCTCGCTGCCTACCAATCAGTTCCTGATGTTAATACTTCAGCATGTC
TTACCCAAAGGGCTACAACGCGTGCGTGACTATGGCTTATTGCATGGCAGCGCCAAACACAAGCGATACCATATTCAACGTATGTTGCTTCACATGGCAC
ACCAGACCTTGCCCGTTGAGGCGGCCCCTGAGCAGCATACGACACGATGTTGTCCTACATGCGGGGAGCGGCTCATGGTCTGCGTGGGCGTGACACGACC
GAGGTAGCCGAAAGGCGAACAGAATAAGGAGAATGGCGTTCACTTAAACACAGGAGAAACAAACCTACAAAACCACATCGTTAACATAACGTATTGAAGT
GATGTCTTATCTGCTCACTTCTTGGCTGCGCTCGCGCTGAAAAAAGTGCCAGACGCAGCGCCTACCTATGCGCATTCGAGCTATTTACTTAATAAAG
CGCCACTTCGGTGCCCTTTATCAACAGCACCTCGACAACTTAACGCTTCAAGGCAAACGTCCCGCCACCATTGATGCTTATGCCCGTGCCGTTCGACGTA
TCGCCGAATTCTTCGATTCTCCCCCTGACAATCTCTCCCAGCAACAACTCAAAACCTACTTTGTGCGCCTTATCGCTTCTCACTCTTGGAGTACGGTTAA
GCTCGACCGCAATGGCTTGCAGTTTTTCTATCGCTATACCCTCAATAAACAGTGGCAATGGCTCGATATCGTCAAGCCTCCGCAAGTGAAGCGCCTGCCT
GATATTTTAACCCCCAACGAAGTCGGCTTACTCATCACTCTCACCCGACAACCTCGCTACCAACGCTTTTTCTATACCCTTTATTGTCTGGGGCTGCGAT
TAGGAGAAGGACTGCAGCTGACAGTGAGCGATATCGATAGCGCTAACCATCAAGTACATGTGCGTCATGCCAAAGGGGGTAAAGACCGACTCGTGCCGCT
CCCAGATAACACCCTCTCTGTGTTGCGCCAATACTGGCGCACCCATCGCCATCCAACCTTGCTCTTTCCCGGTGTCGGGAATGATGGCCCAATGGACCGC
GGTGGCGTGCAGAAAGCCATGAAGCAGGTCTGTCGTGATGCCGGTATTCACAAGACCATCAGTCCCCATTCATTACGTCATTGCTATGCGACGCATTTAC
TCCAACAAGGCCTGGATTTACGGTCTCTACAACGCCTTTTGGGGCATGCCAGTCTCACGACAACGGCACGTTATACGCAACTCACCGACGTCAAACACGC
CCAGCTTCATCAGGCAGTAAATCGACTCGCATCCGGACTCACGATTCTGTGGGAGGCAACATGAGTACGTTTATTCAACTGTTGCAACAACATACCGAGA
CGATGCCGACTCATTCGATGACGCCTGATATCGCTCGGGCCATCTCCGCGATGACCCGTTGCCGGACAGGCGCATTGGGTCAATCTCAATGGGCCTGTCA
GGGCTGTCACTATGACGAGCGAACGCCGCTCTCTTGTGGCCATCGCCATTGCCCCCAATGCCAACATCCCAACACAGTACAATGGCTAGAAAGGCAAACC
ACCAAGTTGTTGCCAACCACGTATTTTATGGTGACCTTCACCTTACCTGCGACGTTGCGTCACTTGGCTCATATGCAAGCAAAAAGCTTGTATGCATTGA
TGTTCTCTGTCGCCGCGTCAGTCCTGAAAGACTTCGCTCAGCGTAAACATGGCGCAGACAGTGGCTTTACGCTGGTACTACACACGCATAACCGACGACG
GGATATGCACCCACACTTGCATGCGATTGTGCCCGCAGGCTTTTACCACCCAACGCGTAAGCAATGGCACAAGGGCAATAAACAGTATCTTTATCCGCAC
GCAGCATTGGCCTCCGTCTGGCGGGCAAGGGTGCTCGCCGCCATTAACGCACACCCCGTGCTCTCACTGCCTCCTTCTGTACCGAAGACATGGGTAGTGG
ATTGCCGTGCAGTCGGACGCGGTCTACCCGCGTTAAAATATCTATCACGCTACTTGTATCGCGGCGTTTTGCCCGACAAAGATATCATCGACATCAGTGA
CCACCAGGTGACCTTCCGGTACACCGACAGCCAAACAAATCAATCGACGACCCGCTCGCTGCCTACCAATCAGTTCCTGATGTTAATACTTCAGCATGTC
TTACCCAAAGGGCTACAACGCGTGCGTGACTATGGCTTATTGCATGGCAGCGCCAAACACAAGCGATACCATATTCAACGTATGTTGCTTCACATGGCAC
ACCAGACCTTGCCCGTTGAGGCGGCCCCTGAGCAGCATACGACACGATGTTGTCCTACATGCGGGGAGCGGCTCATGGTCTGCGTGGGCGTGACACGACC
GAGGTAGCCGAAAGGCGAACAGAATAAGGAGAATGGCGTTCACTTAAACACAGGAGAAACAAACCTACAAAACCACATCGTTAACATAACGTATTGAAGT
GATGTCTTATCTGCTCACTTCTTGGCTGCGCTCGCGCTGAAAAAAGTGCCAGACGCAGCGCCTACCTATGCGCATTCGAGCTATTTACTTAATAAAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
882 bp | 293 aa | 83 | 964 | + | No |
AG : IS91 integrase/resolvase
ORF sequence :
MTPLQQRHFGALYQQHLDNLTLQGKRPATIDAYARAVRRIAEFFDSPPDNLSQQQLKTYFVRLIASHSWSTVKLDRNGLQFFYRYTLNKQWQWLDIVKPP
QVKRLPDILTPNEVGLLITLTRQPRYQRFFYTLYCLGLRLGEGLQLTVSDIDSANHQVHVRHAKGGKDRLVPLPDNTLSVLRQYWRTHRHPTLLFPGVGN
DGPMDRGGVQKAMKQVCRDAGIHKTISPHSLRHCYATHLLQQGLDLRSLQRLLGHASLTTTARYTQLTDVKHAQLHQAVNRLASGLTILWEAT
QVKRLPDILTPNEVGLLITLTRQPRYQRFFYTLYCLGLRLGEGLQLTVSDIDSANHQVHVRHAKGGKDRLVPLPDNTLSVLRQYWRTHRHPTLLFPGVGN
DGPMDRGGVQKAMKQVCRDAGIHKTISPHSLRHCYATHLLQQGLDLRSLQRLLGHASLTTTARYTQLTDVKHAQLHQAVNRLASGLTILWEAT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1047 bp | 348 aa | 961 | 2007 | + | No |
Chemistry : Y2
ORF sequence :
MSTFIQLLQQHTETMPTHSMTPDIARAISAMTRCRTGALGQSQWACQGCHYDERTPLSCGHRHCPQCQHPNTVQWLERQTTKLLPTTYFMVTFTLPATLR
HLAHMQAKSLYALMFSVAASVLKDFAQRKHGADSGFTLVLHTHNRRRDMHPHLHAIVPAGFYHPTRKQWHKGNKQYLYPHAALASVWRARVLAAINAHPV
LSLPPSVPKTWVVDCRAVGRGLPALKYLSRYLYRGVLPDKDIIDISDHQVTFRYTDSQTNQSTTRSLPTNQFLMLILQHVLPKGLQRVRDYGLLHGSAKH
KRYHIQRMLLHMAHQTLPVEAAPEQHTTRCCPTCGERLMVCVGVTRPR
HLAHMQAKSLYALMFSVAASVLKDFAQRKHGADSGFTLVLHTHNRRRDMHPHLHAIVPAGFYHPTRKQWHKGNKQYLYPHAALASVWRARVLAAINAHPV
LSLPPSVPKTWVVDCRAVGRGLPALKYLSRYLYRGVLPDKDIIDISDHQVTFRYTDSQTNQSTTRSLPTNQFLMLILQHVLPKGLQRVRDYGLLHGSAKH
KRYHIQRMLLHMAHQTLPVEAAPEQHTTRCCPTCGERLMVCVGVTRPR
Blast result :
Comments
ISMahy13 is 66% aa (transposase) similar to ISShvi3
References