ISMahy5
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008740.1 | ND | Marinobacter hydrocarbonoclasticus | Marinobacter hydrocarbonoclasticus VT8 |
DNA section
IS Length : 1830 bp
Ends
IR Length : 23/26
IRL : GAGGCTGTAGAAAAAACCCGAAATCCCCCTCGGTTTTGATAGCATCAGGC
IRR : GAGGCTGTAGAAAAACCCGATTCCGAGCCCGTTCCCAACGCCTCACTCCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gcttaatattggc | GTT | agcgaatcactgaggta | 3 |
DNA sequence
GAGGCTGTAGAAAAAACCCGAAATCCCCCTCGGTTTTGATAGCATCAGGCAAACGGACAAGGAGTGGTCAGATGCCCCGCTTCAAGCATTACAACTACGA
CCAGGATGCTATGGTCGTGATCAATTACCAGGAACAGCTCCAACCCGGCACGTTCGAACACGCGGTGCACTACCTGATCGAGCACAAGCTGGACCTGTCG
GTGTTTCATCCCAAGTACCGCAATGAAGACACCGGTCGGCTGGCCTACGATCCGGCCATTCTCCTGAAGATCATCCTGTTCGCTTATTCCAAGGGCATCA
CCTCCAGCCGCGAGATGCAGTGGTGCTGCGAGACCAACATCATCTTCAAGGCCCTGTCCTGCGATACGGTTCCACATTTCACCACCCTGGCCAAGTTCGT
CAGCAGTCACTCGGATGAAATCGAAGAGCTGTTCGAGCAGGTGCTGCTGGTGTGCCACGACCAGGGCCTGCTGGGTAACGAACTCTTCGCCATCGACGGC
TGCAAGATGCCGTCGAACGCGGCCAAGGAATGGTCTGGCACCTTCAAAGAGCTGGAAGAGAAACGCACCAAGCTGCGACGCTTGGTTCGCCATCACCTCA
AGGCCCATTACGAGCGGGATGAGGCAGAGACCGAAGCTGAACTGGACCGGGATATCCGACGAGCGAAAACCATCCTGTCTCTGGATGAGGCGGCGAAGAA
AGTCGACCGCTTCCTAAAGACGAACCGCCCAAGGATGGGCCGGGGGAAACGGAACAAGGAAGTGAAGAGCAATCTCACCGATAACGAAAGCGCCAAGATG
ACCACCAGCAAGGGCACGATCCAGGGATATAACGGCGTGGCCAGGGTGGACAAAAAACACCAGATCATCATTGACGCCCAGGCCTTTGGCGAAGGCCAGG
AACACCACACCCTGCAACCGGTGCTGGAGAGCGTGGAAGTCCGCTTCAGGAAGCTGGGTATCGCTGACAGCATTTATCAGCAAGGCACCATCGTTACTGC
CGACACCGGCTTCGCCAACGAAGCCAACATGAAGTACCTGCATGAACGGCAGATCAACGGCTACGTGCCGGACAACAAGTTCCGCAGTCGCGACCCGAAG
TTCCAGAATCAGAAAAACAAATACGGCAAACGCCATCAGAACCAGCCAACAACGGGCTGGAAAGACATCATCCCGGCCAGTGAATTCCAGTTCGATCCGG
TAACCCTGACCTGCATTTGCCCGACAGGCGAAAGCCTCAAGTACCAGGGTGCCCGGGCAGACCAGAACGGCAAGAGCCGAGCCTACTTCCAGGGTCGTTT
GCTGCAATGCCGTCACTGCCCAAAGAAGCACCAGTGCATGCACAATCCAGAGGCCGCCGACCATCGCAAAGGCAAAGGCCGACAAGTGTCGTTCACCATC
GAGCACAAGCGATTGCCCAACTACACCGACTGGATGAAGCACCGGGTGGACAGCCCGCAGGGTAAAGAGATCTACAGTCACCGCATGTCGGTGGTGGAAC
CGGTGTTCGGCAACATTGGCACGAATAAGAGCCTGAATCGCTTCAGTTTGCGGGGCAAGAAGAAGGTGCAGGGCCAGTGGCAGCTATACTGCCTGGTGCA
CAATATTGAGAAGCTGGCGAATTACGGGCGGATGGCGGCGTAATGCCGAGGGTGGAAGCCCCGGAAAAGTACCTGCGGGAAACCAGCAATGCCGGCTTCA
GGGGCCCCAAAAAGCCGAAGCGGATGGCTGAACATCGAAGTCACGAAAATCGGCCAGTTGATGGCCGCGCTAAAAATTACAGGAGTGAGGCGTTGGGAAC
GGGCTCGGAATCGGGTTTTTCTACAGCCTC
CCAGGATGCTATGGTCGTGATCAATTACCAGGAACAGCTCCAACCCGGCACGTTCGAACACGCGGTGCACTACCTGATCGAGCACAAGCTGGACCTGTCG
GTGTTTCATCCCAAGTACCGCAATGAAGACACCGGTCGGCTGGCCTACGATCCGGCCATTCTCCTGAAGATCATCCTGTTCGCTTATTCCAAGGGCATCA
CCTCCAGCCGCGAGATGCAGTGGTGCTGCGAGACCAACATCATCTTCAAGGCCCTGTCCTGCGATACGGTTCCACATTTCACCACCCTGGCCAAGTTCGT
CAGCAGTCACTCGGATGAAATCGAAGAGCTGTTCGAGCAGGTGCTGCTGGTGTGCCACGACCAGGGCCTGCTGGGTAACGAACTCTTCGCCATCGACGGC
TGCAAGATGCCGTCGAACGCGGCCAAGGAATGGTCTGGCACCTTCAAAGAGCTGGAAGAGAAACGCACCAAGCTGCGACGCTTGGTTCGCCATCACCTCA
AGGCCCATTACGAGCGGGATGAGGCAGAGACCGAAGCTGAACTGGACCGGGATATCCGACGAGCGAAAACCATCCTGTCTCTGGATGAGGCGGCGAAGAA
AGTCGACCGCTTCCTAAAGACGAACCGCCCAAGGATGGGCCGGGGGAAACGGAACAAGGAAGTGAAGAGCAATCTCACCGATAACGAAAGCGCCAAGATG
ACCACCAGCAAGGGCACGATCCAGGGATATAACGGCGTGGCCAGGGTGGACAAAAAACACCAGATCATCATTGACGCCCAGGCCTTTGGCGAAGGCCAGG
AACACCACACCCTGCAACCGGTGCTGGAGAGCGTGGAAGTCCGCTTCAGGAAGCTGGGTATCGCTGACAGCATTTATCAGCAAGGCACCATCGTTACTGC
CGACACCGGCTTCGCCAACGAAGCCAACATGAAGTACCTGCATGAACGGCAGATCAACGGCTACGTGCCGGACAACAAGTTCCGCAGTCGCGACCCGAAG
TTCCAGAATCAGAAAAACAAATACGGCAAACGCCATCAGAACCAGCCAACAACGGGCTGGAAAGACATCATCCCGGCCAGTGAATTCCAGTTCGATCCGG
TAACCCTGACCTGCATTTGCCCGACAGGCGAAAGCCTCAAGTACCAGGGTGCCCGGGCAGACCAGAACGGCAAGAGCCGAGCCTACTTCCAGGGTCGTTT
GCTGCAATGCCGTCACTGCCCAAAGAAGCACCAGTGCATGCACAATCCAGAGGCCGCCGACCATCGCAAAGGCAAAGGCCGACAAGTGTCGTTCACCATC
GAGCACAAGCGATTGCCCAACTACACCGACTGGATGAAGCACCGGGTGGACAGCCCGCAGGGTAAAGAGATCTACAGTCACCGCATGTCGGTGGTGGAAC
CGGTGTTCGGCAACATTGGCACGAATAAGAGCCTGAATCGCTTCAGTTTGCGGGGCAAGAAGAAGGTGCAGGGCCAGTGGCAGCTATACTGCCTGGTGCA
CAATATTGAGAAGCTGGCGAATTACGGGCGGATGGCGGCGTAATGCCGAGGGTGGAAGCCCCGGAAAAGTACCTGCGGGAAACCAGCAATGCCGGCTTCA
GGGGCCCCAAAAAGCCGAAGCGGATGGCTGAACATCGAAGTCACGAAAATCGGCCAGTTGATGGCCGCGCTAAAAATTACAGGAGTGAGGCGTTGGGAAC
GGGCTCGGAATCGGGTTTTTCTACAGCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1572 bp | 523 aa | 72 | 1643 | + | No |
Chemistry : DDE
ORF sequence :
MPRFKHYNYDQDAMVVINYQEQLQPGTFEHAVHYLIEHKLDLSVFHPKYRNEDTGRLAYDPAILLKIILFAYSKGITSSREMQWCCETNIIFKALSCDTV
PHFTTLAKFVSSHSDEIEELFEQVLLVCHDQGLLGNELFAIDGCKMPSNAAKEWSGTFKELEEKRTKLRRLVRHHLKAHYERDEAETEAELDRDIRRAKT
ILSLDEAAKKVDRFLKTNRPRMGRGKRNKEVKSNLTDNESAKMTTSKGTIQGYNGVARVDKKHQIIIDAQAFGEGQEHHTLQPVLESVEVRFRKLGIADS
IYQQGTIVTADTGFANEANMKYLHERQINGYVPDNKFRSRDPKFQNQKNKYGKRHQNQPTTGWKDIIPASEFQFDPVTLTCICPTGESLKYQGARADQNG
KSRAYFQGRLLQCRHCPKKHQCMHNPEAADHRKGKGRQVSFTIEHKRLPNYTDWMKHRVDSPQGKEIYSHRMSVVEPVFGNIGTNKSLNRFSLRGKKKVQ
GQWQLYCLVHNIEKLANYGRMAA
PHFTTLAKFVSSHSDEIEELFEQVLLVCHDQGLLGNELFAIDGCKMPSNAAKEWSGTFKELEEKRTKLRRLVRHHLKAHYERDEAETEAELDRDIRRAKT
ILSLDEAAKKVDRFLKTNRPRMGRGKRNKEVKSNLTDNESAKMTTSKGTIQGYNGVARVDKKHQIIIDAQAFGEGQEHHTLQPVLESVEVRFRKLGIADS
IYQQGTIVTADTGFANEANMKYLHERQINGYVPDNKFRSRDPKFQNQKNKYGKRHQNQPTTGWKDIIPASEFQFDPVTLTCICPTGESLKYQGARADQNG
KSRAYFQGRLLQCRHCPKKHQCMHNPEAADHRKGKGRQVSFTIEHKRLPNYTDWMKHRVDSPQGKEIYSHRMSVVEPVFGNIGTNKSLNRFSLRGKKKVQ
GQWQLYCLVHNIEKLANYGRMAA
Blast result :
Comments
ISMahy5 is 96% aa similar to ISMasa2.
References
1] Sarah Sonbol (2020) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (200-) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (200-) Direct submission GenBank.