ISHati3

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP039374 ND Halomonas titanicae
Halomonas titanicae ANRCS81
DNA section
IS Length : 2413 bp

Ends


oriIS : TAAACCGCTTCGCGGTAGCTGTCGACGAACCACGTTTTTCACCTCATCGGGCCACACTGTTGATTGACCCACGTGGGTCATACAACAGGAGTGACGACGA II struct. : No
terIS : AATACAATCCCCTATTAAATAGCTGCCTGATGGACGCGCCTTAGTCCAACAGGCATTTATTCGCCATGCTCCGCACGGCGAATAAATGCTTCACTGTTAT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCTGTT GAACGCATGAGCCA

DNA sequence

TAAACCGCTTCGCGGTAGCTGTCGACGAACCACGTTTTTCACCTCATCGGGCCACACTGTTGATTGACCCACGTGGGTCATACAACAGGAGTGACGACGA
TGACTGCCTTGCGACAGAAGATGATCGCGGCCATGCGTCAGCGTGGCTTTGCGCAACGTACCCACAACACCTACCTGATGGTGGTCACTGAACTAGCACG
TTATTTCCACCGCCCGCCAGACACGTTGAGTACCGACGACCTGCAACACTTCTTTAATCACCTGGTTCAGGAGCGTGGTTTGTCCGCCGCCAGTTGCCGT
GTTTATCTGCACGGCGTGCGGTTCCTGTATTTGCACGTGTTGCAGTGGCCTTCGTTTGATGTGCCGCTCACCGTCCCCAAAAAACCGCAGCGGATTCCAG
AACTGCTGACCCGCGACGAGGTTCGGCGGATCCTGGCCGCCTGCCAAAACGCCAAGCATCGCATGATGCTCGAACTGTGCTACGGCTGCGGATTGCGTGT
AACCGAGGTCTGCCACCTGCGAGTTAGTGACATCGACAGCCAGCGTTACCAACTCCGTGTGACGCAGGGCAAGGGCGGCAAGGATCGTATGGTGTTACTA
CCCGTGACCCTGCTTGATCGCTTGCGCGAATACTGGCGCGCCTATCGGCCAGTCACATGGCTGTTCCCGAGCGCTCTGTTTCCCGATCAAGCCCTACACG
CCAGTGCGCCACAGAAGGCCTTTACCCAAGCCAAGCGCCTGGCCGGGATCGAGCGGGTCGGTGGCATCCATAGTCTGCGCCATGCCTATGCTACCCATGT
TCTGGAGCAAGGCCTTCCCGTCCATCAGCTCCAGCGGCTACTGGGCCACCGTCACCTCCAGTCGACGATGCGCTACCTGCACTGGCTGCCGAGCCAGCAA
GGGGGAGATCAGTGTCATATTGACCTGGTGGCCGCCTTGGAGGTGAGCCATGACTAAGGCCGCTACCTTGCAACAGGCGCTGACCCGCTTTCTCGATCCA
ACCGGTCTTGATCGCCAGCGCCAACGGGTGTGTACCCATCTGCTGGCCTGCCGAACGGAGGCGATGGGCGGGATGGTCTTGCAGTGCTCCGACTGCGCTC
ATGTACAGCCACACTACTTTGGCTGCCGCGATCGTCATTGCCCGCAGTGCCAAGGCCGCGCCATAGAACAATGGGCCGAACGTCAGCAGGCCAATATCTT
GCCTGTGCGCTATTACCACGTCGTGTTCACGCTGCCGCACAGTCTTAATGGCTGGGTTCAGCTTCATCCCGAGGTGATTCACCGGTTGCTGTTCCAGAGT
GCTTGGCAAACGCTGCGCACTTTTGGACGAGACCCCAAACGCCTTGGCGGCGAAATGGGGATGATCGCCGTGCTTCACACTTGGGGTCAGAACCTGAGCC
AACATGTGCATCTGCACTGTTTGATTCCAGGCGGTGCCTTGGGTGACGATGGCCGCTGGCGTGGGGCGCATAGCAACTACTTGTTCCCGGTGCGGGCCTT
GTCATGCCACTTTCGCGGGCACATGGTGAGCGCTCTGCGCAAGGCCGCCAATGCAGGCGATCTCCACCGGGTAAACCGGCCCGGAGATGTCGATGCTCAA
CTGAACACGCTGATGGCCACTGACTGGGTGGTTTACAGCAAGGACTGCCTTGAACACACTCATACGGTAGTTCGCTACTTGGCGCGCTACACGCGCCAGA
TCGCCATCAGCAACGCGCGTATCCTGGCCGTCGATGAGCACCAGGTGACCCTACGCTACAAGGACTATCGCGACCATGACCGACACAAGTCGCTCATCCT
CAATGGCGAGGAGTTCGTACGCCGCTTCCTGCTTCACGTCCTGCCCAAAGGACTGATGCGGGTGCGTCACTACGGTTTTCTGGCCAATCGCTGCCGTCGG
CAACGTCTGATGCAGGTTCGTCGAGCACTAGCGGTGGTTGAGCAAGCACCGGGTGCCGATATGGCTGCCAGCGATGCGGAGCTGGCCTACACCTGTCCAC
ATTGCAAGCAACCCACATTGCGGATGATCGGGACGCTCACACCCCAGCGCCACACCTACGATCAACCGTCTAATCATAAGGATCAACACTATCGAGCATG
ATGTAACGCCCTACGACGACAACCGACTTGGCTAACCGGCTCGCTAGCGGGTCATGGATAAGCTCGTCCCGATGATGGATTTTAGCCATCAGGCGCGCTA
CATTGGGTTAAATTAGATTTGGAAGTGCTGAAATGATGGCGAAACTCACGATCAGAGCGCGTTACCCCAGACATGCCAATGCACGGCTTGGTACCTCAGG
CCGCACGCTGATCAATACAATCCCCTATTAAATAGCTGCCTGATGGACGCGCCTTAGTCCAACAGGCATTTATTCGCCATGCTCCGCACGGCGAATAAAT
GCTTCACTGTTAT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
858 bp285 aa100957+No
ORF function : Accessory Gene
AG : IS91 integrase/resolvase

ORF sequence :

MTALRQKMIAAMRQRGFAQRTHNTYLMVVTELARYFHRPPDTLSTDDLQHFFNHLVQERGLSAASCRVYLHGVRFLYLHVLQWPSFDVPLTVPKKPQRIP
ELLTRDEVRRILAACQNAKHRMMLELCYGCGLRVTEVCHLRVSDIDSQRYQLRVTQGKGGKDRMVLLPVTLLDRLREYWRAYRPVTWLFPSALFPDQALH
ASAPQKAFTQAKRLAGIERVGGIHSLRHAYATHVLEQGLPVHQLQRLLGHRHLQSTMRYLHWLPSQQGGDQCHIDLVAALEVSHD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1152 bp383 aa9502101+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MTKAATLQQALTRFLDPTGLDRQRQRVCTHLLACRTEAMGGMVLQCSDCAHVQPHYFGCRDRHCPQCQGRAIEQWAERQQANILPVRYYHVVFTLPHSLN
GWVQLHPEVIHRLLFQSAWQTLRTFGRDPKRLGGEMGMIAVLHTWGQNLSQHVHLHCLIPGGALGDDGRWRGAHSNYLFPVRALSCHFRGHMVSALRKAA
NAGDLHRVNRPGDVDAQLNTLMATDWVVYSKDCLEHTHTVVRYLARYTRQIAISNARILAVDEHQVTLRYKDYRDHDRHKSLILNGEEFVRRFLLHVLPK
GLMRVRHYGFLANRCRRQRLMQVRRALAVVEQAPGADMAASDAELAYTCPHCKQPTLRMIGTLTPQRHTYDQPSNHKDQHYRA

 

Blast result :
Comments
ISHati3 is 59% aa (transposase) similar to ISSod25.
References
1] Sarah Sonbol (2021) Direct submission.
2] Li,J. (2019) Direct GenBank submission.