ISMasa2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017715 ND Marinobacter salinus
Marinobacter salinus Hb8
DNA section
IS Length : 1831 bp

Ends


IR Length : 17/18

IRL : GAGGCTGTAGAAAAACCCCGAAATCTCCACCTCGGTTTGGTAGGATCAGG
IRR : GAGGCTCTAGAAAAACCCGATTTCGAGTCGTTCCCAGCGCCTGGTTCTTA

Insertion site


Left flankDirect repeatRight flankDR Length
CGCATGCTGGCTGGCGTTAGGTAATCGTGATG3

DNA sequence

GAGGCTGTAGAAAAACCCCGAAATCTCCACCTCGGTTTGGTAGGATCAGGCAAACAGACAAGGAGTCGTCGGCATGCCCCGCTTCAAGCATTACAACTAC
GACCAGGATGCCATGGTCGTGATCAACTACCAGGAACAGCTTCAACCCGGCACCTTTGAACACGCAGTGCACTATCTGATCGAACACAAGCTGGACCTGT
CAGTTTTCCATCCAAAATACCGCAACGAAGACACCGGCCGCTTAGCCTACGATCCGGCCATCCTGCTGAAGATCATCCTGTTTGCCTACTCCAAAGGCAT
CACCTCCAGTCGCGAGATGCAGTGGTGCTGCGAGACCAACATCATCTTCAAGGCCCTGTCCTGCGACACTGTTCCGCACTTCACCACGTTGGCCAAGTTC
GTCAGCAGCCACTCGGATGAGATCGAAGAGCTGTTCGAGCAGGTATTGTTGGTCTGCCACGACCAGGGCCTGCTGGGCAACGAACTCTTCGCCATCGACG
GCTGCAAGATGTCGTCGAATGCGGCCAAAGAATGGTCCGGCACCTTTAAGGAACTGGAAGAGAAACGAACCAAGCTGCGACGCCTGGTTCGCCATCACCT
CAAGGCCCATTACGAGCGGGACGAGGCAGAGACTGAAGCGGAACTGGACCGGGACATCCGACGAGCCAAGACCATCCTGTCCCTGGATGAGGCCGCCAGG
AAAGTCGACCGCTTCCTAAAGACGAACCGCCCAAGGATGGGCCGGGGGAAACGGAACAAGGAAGTGAAGAGCAACATCACCGATAACGAAAGCGCCAAGA
TGACCACCAGCAAGGGCACGATCCAGGGCTATAACGGCGTGGCCACGGTGGACAAGAAACACCAGATCATCATCGACGCCCAGGCCTTTGGCGAAGGCCA
GGAACACCACACCCTGCAACCGGTGCTGGAGAGCGTGGAAACCCGCTTCAAGAAGCTGGGCATCGCCGACAGCATCTACCAGCAAGGCATCATTGTTACC
GCCGACACCGGCTTCGCCAACGAAGCGAACATGAAATACCTGCATGAACGGCAGATCAATGGCTACGTGCCGGACAACAAATTCCGCAGTCGCGACCCGA
AGTTCCAGAACCAGAAAGACAAGTACGGCAAGCGTCACCAGAACCAGCCAACCACGGGTTGGAAAGACATCATTCCGGCCAGTGAATTCCAGTTCGATCC
GGTCAACCTGACGTGCATCTGCCCGACTGGCCAAGAGCTTACCTACCGGGGCCAACGGGAAGCGGAGAATGGCAATATCCGGGTGCACTTCGAAGGTCGA
TTGCTGCAATGTCGGCACTGTCCCAAGAAGCACCAATGCATGCAGAACCCTGCATCCGCTAACCACCGAAATGGGTCTGGCCGACAGGTGTCGTTCACCA
TTGAGAACAAGCGCTTGCCCAACTACACGGACTGGATGAAACACCGTGTCGACAGCCGTCAGGGCAAAGAGATCTACAGCCACCGCATGTCGGTGGTGGA
ACCGGTGTTCGGCAACATTGGCACGAATAAGGGGCTCAATCGCTTCAGTTTGCGGGGCAAAAAGAAGGTGCAGGGCCAGTGGCAGCTATACTGCCTGGTG
CACAATATTGAGAAACTGGCGAATTACGGGCGGTTGGCGGCATGAAACAGGGATCAGAAGGCGGGAAATATGGTCCCTGGATGCCAGCAATACCGGCACT
GGAAGCGGCAAAGACCCGAAACGACTCGCTGAACATCGAAAGTGGAATCATCAGTCAGTTAATGGCCGCGGCAAACAATTTTAAGAACCAGGCGCTGGGA
ACGACTCGAAATCGGGTTTTTCTAGAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1572 bp523 aa741645+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRFKHYNYDQDAMVVINYQEQLQPGTFEHAVHYLIEHKLDLSVFHPKYRNEDTGRLAYDPAILLKIILFAYSKGITSSREMQWCCETNIIFKALSCDTV
PHFTTLAKFVSSHSDEIEELFEQVLLVCHDQGLLGNELFAIDGCKMSSNAAKEWSGTFKELEEKRTKLRRLVRHHLKAHYERDEAETEAELDRDIRRAKT
ILSLDEAARKVDRFLKTNRPRMGRGKRNKEVKSNITDNESAKMTTSKGTIQGYNGVATVDKKHQIIIDAQAFGEGQEHHTLQPVLESVETRFKKLGIADS
IYQQGIIVTADTGFANEANMKYLHERQINGYVPDNKFRSRDPKFQNQKDKYGKRHQNQPTTGWKDIIPASEFQFDPVNLTCICPTGQELTYRGQREAENG
NIRVHFEGRLLQCRHCPKKHQCMQNPASANHRNGSGRQVSFTIENKRLPNYTDWMKHRVDSRQGKEIYSHRMSVVEPVFGNIGTNKGLNRFSLRGKKKVQ
GQWQLYCLVHNIEKLANYGRLAA

 

Blast result :
Comments
ISMasa1 is 96% aa similar to ISMasa1.
Identified within an integron (same integron contains ISMasa1) and shows 86% identity to ISMasa1
References
1] Sarah Sonbol (2021) Direct submission.
2] Park,S.-J. (2016) Direct GenBank submission.