ISMasa1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017715 ND Marinobacter salinus
Marinobacter salinus Hb8
DNA section
IS Length : 1830 bp

Ends


IR Length : 18

IRL : GAGGCTGTAGAAAAACCCCGAAATCTCCACCCCGGTTTGGTAGGATCAGG
IRR : GAGGCTGTAGAAAAACCCGATTGCGAGTCGCTCCCAGCGCCTGGTTCCTA

Insertion site


Left flankDirect repeatRight flankDR Length
GCATGCTGGCTAGCGTTAGTTGCCATCCT3
CGCATGCTGGCGGCgttATAAATCGGTGG3
GCATGCTGGCTAGCGTTAGTTGCCATCCT3
GCATGCTGGCTGGCGTTATACGTAAAGGA3

DNA sequence

GAGGCTGTAGAAAAACCCCGAAATCTCCACCCCGGTTTGGTAGGATCAGGCAAACGGACAAGGAGTTGTTGGCATGCCCCGCTTCAAGCATTACAACTAC
GACCAGGACGCCATGGTCGTGATCAACTACCAGGAACAGCTTCAACCCGGCACCTTTGAATACGCGGTGCACTACCTGATCGAACATAAGCTAGACCTGT
CAGTTTTCCATCCCAAATACCGCAACGAAGACACTGGCCGTTTGGCCTACGATCCGGCCATCCTGCTGAAGATCATTCTGTTTGCCTATTCCAAGGGCAT
CACCTCCAGCCGTGAGATGCAGTGGTGCTGCGAGACCAACATCATCTTCAAAGCCTTGTCCTGCGATACGGTTCCCCACTTCACCACCCTGGCGAAGTTC
GTCAGCAGCCATGCCGAGGAAATCGAAGAGCTGTTCGAACAGGTACTGCTGGTGTGCCACGAACAGGGATTGCTGGGCAACGAACTCTTCGCTATCGACG
GCTGCAAGATGTCCTCCAACGCCGCCAAAGAATGGTCGGGCACCTTTAAGGAACTGGGCGAAAAGCGAGAGAAACTGCGACGACTGATCCGCCACCACTT
GAAGGAGCATTACGAACGGGACGAGGCGGAGACCGAAGCCGAACTGGATCGGGATATCCGTCGGGCAAACACCATCCTCTCGCTGGATGAAGCCATGAAC
AAAGTGGACCGCTTCCTAAAGACGAACCGCCCAAGGATGGGCCGTGGGAAGCGGAGCAAGGAAGTGAAGAGCAACCTGACTGACAACGAAAGTGCCAAGA
TGACCACCAGCAAAGGCACGATCCAGGGCTATAACGGCGTAGCCACGGTGGATAAGAAACACCAGATCGTCATCGACGCCCAGGCCTTCGGCGAAGGCCA
GGAACACCACACCCTGCAACCGGTACTGGAAACCGTCGAATCCCGATTCCGGAAACTGGGCATCGCTGACAGTATTTACCAGCAAGGCACGGTCGTCACC
GCCGACACCGGCTTCGCTAACGAAGCCAACATGAAGTACCTGCACGAACGACAGATCAACGGCTACGTGCCAGACAATCGGTTCCGCAGCCGGGATCCGA
AGTTCCAGAACCAGAAAGACAAATACGGCAAGCGTCATCAGAATCTGCCGGATACAGGCTGGAAGCAGACCATCCCGGCCAGTGAGTTCCAGTTCGATCC
GGTAACCATGACGTGCATCTGCCCGGCAGGTAATTCCATCAGCTACCAAGCCACACGCGAAGCCGAGAATGGCAAAATGCGGGTGCATTTCGAAGGGCGT
TTGCTGCAATGCCGGCACTGCCCGAAGAAGCATCAGTGTATGCAGAACCCCGCGTCCGCCAACCATCGCAAAGGCTCCGGAAGACAGGTCTCGTTTACCA
TCGAAAACAAGCGCCTGCCAAACTACACCGACTGGATGAAACACCGGGTGGACAGTCCGCAGGGCAAGGAAATATACAGTCACCGGATGTCGGTGGTAGA
GCCGGTATTTGGCAACATTGGTACCACGAAGCGACTGAACCGTTTCAGCTTGCGAGGCAAGAAGAAGGTGCAGGGCCAGTGGCAGCTGTACTGCCTGGTG
CACAATATTGAGAAGTTAGCGAATTACGGGCGGTTAGCGGCGTAATGCCGAGGGTGGAAGGCCAGAAATGTGGCCGCTGAATGCTAGTAATACCGGCACT
AAGACCGTCAACGGGCCGAAACTGATGGCTGAACATCGCAATGGCAATAATCGGCTAGCTGATGGCTGCGACAAAAATTTTAGGAACCAGGCGCTGGGAG
CGACTCGCAATCGGGTTTTTCTACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1572 bp523 aa741645+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRFKHYNYDQDAMVVINYQEQLQPGTFEYAVHYLIEHKLDLSVFHPKYRNEDTGRLAYDPAILLKIILFAYSKGITSSREMQWCCETNIIFKALSCDTV
PHFTTLAKFVSSHAEEIEELFEQVLLVCHEQGLLGNELFAIDGCKMSSNAAKEWSGTFKELGEKREKLRRLIRHHLKEHYERDEAETEAELDRDIRRANT
ILSLDEAMNKVDRFLKTNRPRMGRGKRSKEVKSNLTDNESAKMTTSKGTIQGYNGVATVDKKHQIVIDAQAFGEGQEHHTLQPVLETVESRFRKLGIADS
IYQQGTVVTADTGFANEANMKYLHERQINGYVPDNRFRSRDPKFQNQKDKYGKRHQNLPDTGWKQTIPASEFQFDPVTMTCICPAGNSISYQATREAENG
KMRVHFEGRLLQCRHCPKKHQCMQNPASANHRKGSGRQVSFTIENKRLPNYTDWMKHRVDSPQGKEIYSHRMSVVEPVFGNIGTTKRLNRFSLRGKKKVQ
GQWQLYCLVHNIEKLANYGRLAA*

 

Blast result :
Comments
ISMasa1 is 48% aa similar to ISMac1.
Identified within an integron. 2 other isoforms downstream the same integron showed greater than 99% identity
References
1] Sarah Sonbol (2021) Direct submission.
2] Park,S.-J. (2016) Direct GenBank submission.