ISPa134

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 2065 bp

Ends


IR Length : 25/31

IRL : gtaagtgctccatgaaccccacattcaaagcgcttacctgatgcccgatg
IRR : gagtgcgatccatgaaccccaccttctaaaagatagggcctcagcttacc

Insertion site


Left flankDirect repeatRight flankDR Length
cgaacaggtagatcaattgagcccacag8

DNA sequence

GTAAGTGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATGCCCGATGCTGTGCTCCCGATTTCCTTCTGGAGCCAGCCCTGCATGATGCGCCCCGAC
AGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCTGTGGACTTTCGAAAGTCCATCGACGGCCTTACTGCCTTGGTAGAACTGGATATCAAAGTCGCCG
TGTTCGACCCCGTGCTCTTCGTCTTCCTCAACAAGGCGCGTAATCGGATCAAAGTGTTGTACTGGGAGCGCAACGGCTTCTGCCTCTGGCTCAAGCGCCT
GGAAGCCGAGCGCTTCAAAATGTCGCCTGAGCCCAGCGACGAAGCGATTGTCCTGACCGTCCAAGAACTCAATTGGCTGCTCGACGGTTTCGACCTTTGG
CGCAACCGTCCTCATCAGGTTTTGACTCCGCGCTACGTCGCCTGACCCGGTATAATCCGCGGCATGATTTCCGTGCCCGACAATCTCCCAGACGATCCTG
CCCTGCTCAAGCAATTATTGCTTGAGAGCTATGCTGCCCGTTTGCGCGAGCAGGAAGTCAATCAGGCCCACATCGTCCAAATTGACGATCTGAAAGAACA
AATCAAGTTATGGCGTGACCGTTTCTTTGGCCGCAAGTCCGAGCAAACCGTCGATCCCAAAACGCCGCAACTGGCCATGTTCGATGAAGCGGAAAATGAC
CCTCTGCTGGCTGTAGTCGATGATGCCGATGAAGAAGTCGTTGTCCCGGTCAAGCGCCGTGGCAAGCGCAAGCCACTGGCGGCTAATCTGCCACGTATCG
AAGTTATCCATGAGTTGCCCGAACACGAACTGACCTGCACCTGCGGTTGCCGCAAGCATGTCATCGGCGAAGAAACCAGCGAGCAGCTCGATATCGTGCC
GATGCAGATCCGCGTACTCAAACACGTGCGCAAGATCTATGGCTGCCGTGGTTGCGAGACTGCTCCTGTCACTGCTGACAAGCCCGCCCAGTTAATCGAA
AAAAGCATGGCCAGCCCAAGCGTGCTGGCCATGCTGCTGACGACCAAGTACGTCGATGGCTTGCCGCTACACAGGTTTGAAAGTGTGCTGTCCCGCCACG
GCATCGAGATTCCACGACAAACCCTGGCGCGTTGGGTGATCCAGTGCAGTAAATACTTCCAGCCGCTGTTGAACCTGATGCGTGATCGGCTGCTGGAAAG
TCCGGTGATTCATTGCGATGAGACCCGCGTCCAGGTGTTGAAAGAACCGGATCGAGACCCGACCAGCCAATCCTGGATGTGGGTGCAAGCCAGTGGCCCG
CCTGATCGACAAGTTGTGCTGTTCGACTACACCACCAGCCGTGCGCAGGAAGTACCATTGCGTCTGCTGCAAGGCTATCGCGGCTATGTGATGACCGACG
ATTATGCGGGTTACAACGCTTTGGCGTTGCAGCCCGGTATCGAGCGACTGGCATGCATGGTTCACGCGCGCCGCAAGTTCGTCGAAGCACAAAAGGTGCA
GCCCAAGGGTAAGACCGGACGAGCCGATGTGGCGCTGACGATGATCAATAAGCTGTATGACATCGAGCGCGACCTCAAGGAGGTCAGCGACGAACAGCGG
TTCATCGGTCGCCAGGAAAGAAGCTTGCCGATCCTCGGTCAGCTGAAAAGCTGGCTGGACAAGACGTACGCCCAGGTGACGCCGCAAAGCGTATTGGGCA
AGGCGGTGCATTACCTGGCAAACAACTGGAGCCGCCTGGAACGGTATGTCGAAGCGGGCCATTTGCCAATCGACAACAACCTGGCAGAGCGCGCGATAAA
ACCGTTTGTCATTGGGCGTAAGGCTTGGCTGTTCAGTGACACGCCCAAGGGCGCCACGGCAAGTGCGCAGATATACAGCTTGGTCGAGACCGCCAAGGTC
AACGGCCAGGAGCCCTATACGTGGCTGCGCCACGTACTTGAGCGCCTGCCGTATGCGTCGTCGGTCTCAGACTACGAAGCCTTGCTGCCATGGAACTGCT
CGCCAGAGATACCACGGTAAGCTGAGGCCCTATCTTTTAGAAGGTGGGGTTCATGGATCGCACTC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
360 bp119 aa86445+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MMRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNKARNRIKVLYWERNGFCLWLKRLEAERFKMSPEPSDEAIVLTVQELNWLLD
GFDLWRNRPHQVLTPRYVA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1557 bp518 aa4642020+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISVPDNLPDDPALLKQLLLESYAARLREQEVNQAHIVQIDDLKEQIKLWRDRFFGRKSEQTVDPKTPQLAMFDEAENDPLLAVVDDADEEVVVPVKRRG
KRKPLAANLPRIEVIHELPEHELTCTCGCRKHVIGEETSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGL
PLHRFESVLSRHGIEIPRQTLARWVIQCSKYFQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLR
LLQGYRGYVMTDDYAGYNALALQPGIERLACMVHARRKFVEAQKVQPKGKTGRADVALTMINKLYDIERDLKEVSDEQRFIGRQERSLPILGQLKSWLDK
TYAQVTPQSVLGKAVHYLANNWSRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPYASS
VSDYEALLPWNCSPEIPR

 

Blast result :
Comments
ISPa134 is 92% aa similar to ISPsy5.
ISPa134 was found in a ST235-Pseudomonas aeruginosa disrupting EXA2 gene of ExoU genomic island.
References
1] Maria Lopez (2020) Direct submission.