ISPa134
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 2065 bp
Ends
IR Length : 25/31
IRL : gtaagtgctccatgaaccccacattcaaagcgcttacctgatgcccgatg
IRR : gagtgcgatccatgaaccccaccttctaaaagatagggcctcagcttacc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
cgaacaggta | gatcaatt | gagcccacag | 8 |
DNA sequence
GTAAGTGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATGCCCGATGCTGTGCTCCCGATTTCCTTCTGGAGCCAGCCCTGCATGATGCGCCCCGAC
AGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCTGTGGACTTTCGAAAGTCCATCGACGGCCTTACTGCCTTGGTAGAACTGGATATCAAAGTCGCCG
TGTTCGACCCCGTGCTCTTCGTCTTCCTCAACAAGGCGCGTAATCGGATCAAAGTGTTGTACTGGGAGCGCAACGGCTTCTGCCTCTGGCTCAAGCGCCT
GGAAGCCGAGCGCTTCAAAATGTCGCCTGAGCCCAGCGACGAAGCGATTGTCCTGACCGTCCAAGAACTCAATTGGCTGCTCGACGGTTTCGACCTTTGG
CGCAACCGTCCTCATCAGGTTTTGACTCCGCGCTACGTCGCCTGACCCGGTATAATCCGCGGCATGATTTCCGTGCCCGACAATCTCCCAGACGATCCTG
CCCTGCTCAAGCAATTATTGCTTGAGAGCTATGCTGCCCGTTTGCGCGAGCAGGAAGTCAATCAGGCCCACATCGTCCAAATTGACGATCTGAAAGAACA
AATCAAGTTATGGCGTGACCGTTTCTTTGGCCGCAAGTCCGAGCAAACCGTCGATCCCAAAACGCCGCAACTGGCCATGTTCGATGAAGCGGAAAATGAC
CCTCTGCTGGCTGTAGTCGATGATGCCGATGAAGAAGTCGTTGTCCCGGTCAAGCGCCGTGGCAAGCGCAAGCCACTGGCGGCTAATCTGCCACGTATCG
AAGTTATCCATGAGTTGCCCGAACACGAACTGACCTGCACCTGCGGTTGCCGCAAGCATGTCATCGGCGAAGAAACCAGCGAGCAGCTCGATATCGTGCC
GATGCAGATCCGCGTACTCAAACACGTGCGCAAGATCTATGGCTGCCGTGGTTGCGAGACTGCTCCTGTCACTGCTGACAAGCCCGCCCAGTTAATCGAA
AAAAGCATGGCCAGCCCAAGCGTGCTGGCCATGCTGCTGACGACCAAGTACGTCGATGGCTTGCCGCTACACAGGTTTGAAAGTGTGCTGTCCCGCCACG
GCATCGAGATTCCACGACAAACCCTGGCGCGTTGGGTGATCCAGTGCAGTAAATACTTCCAGCCGCTGTTGAACCTGATGCGTGATCGGCTGCTGGAAAG
TCCGGTGATTCATTGCGATGAGACCCGCGTCCAGGTGTTGAAAGAACCGGATCGAGACCCGACCAGCCAATCCTGGATGTGGGTGCAAGCCAGTGGCCCG
CCTGATCGACAAGTTGTGCTGTTCGACTACACCACCAGCCGTGCGCAGGAAGTACCATTGCGTCTGCTGCAAGGCTATCGCGGCTATGTGATGACCGACG
ATTATGCGGGTTACAACGCTTTGGCGTTGCAGCCCGGTATCGAGCGACTGGCATGCATGGTTCACGCGCGCCGCAAGTTCGTCGAAGCACAAAAGGTGCA
GCCCAAGGGTAAGACCGGACGAGCCGATGTGGCGCTGACGATGATCAATAAGCTGTATGACATCGAGCGCGACCTCAAGGAGGTCAGCGACGAACAGCGG
TTCATCGGTCGCCAGGAAAGAAGCTTGCCGATCCTCGGTCAGCTGAAAAGCTGGCTGGACAAGACGTACGCCCAGGTGACGCCGCAAAGCGTATTGGGCA
AGGCGGTGCATTACCTGGCAAACAACTGGAGCCGCCTGGAACGGTATGTCGAAGCGGGCCATTTGCCAATCGACAACAACCTGGCAGAGCGCGCGATAAA
ACCGTTTGTCATTGGGCGTAAGGCTTGGCTGTTCAGTGACACGCCCAAGGGCGCCACGGCAAGTGCGCAGATATACAGCTTGGTCGAGACCGCCAAGGTC
AACGGCCAGGAGCCCTATACGTGGCTGCGCCACGTACTTGAGCGCCTGCCGTATGCGTCGTCGGTCTCAGACTACGAAGCCTTGCTGCCATGGAACTGCT
CGCCAGAGATACCACGGTAAGCTGAGGCCCTATCTTTTAGAAGGTGGGGTTCATGGATCGCACTC
AGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCTGTGGACTTTCGAAAGTCCATCGACGGCCTTACTGCCTTGGTAGAACTGGATATCAAAGTCGCCG
TGTTCGACCCCGTGCTCTTCGTCTTCCTCAACAAGGCGCGTAATCGGATCAAAGTGTTGTACTGGGAGCGCAACGGCTTCTGCCTCTGGCTCAAGCGCCT
GGAAGCCGAGCGCTTCAAAATGTCGCCTGAGCCCAGCGACGAAGCGATTGTCCTGACCGTCCAAGAACTCAATTGGCTGCTCGACGGTTTCGACCTTTGG
CGCAACCGTCCTCATCAGGTTTTGACTCCGCGCTACGTCGCCTGACCCGGTATAATCCGCGGCATGATTTCCGTGCCCGACAATCTCCCAGACGATCCTG
CCCTGCTCAAGCAATTATTGCTTGAGAGCTATGCTGCCCGTTTGCGCGAGCAGGAAGTCAATCAGGCCCACATCGTCCAAATTGACGATCTGAAAGAACA
AATCAAGTTATGGCGTGACCGTTTCTTTGGCCGCAAGTCCGAGCAAACCGTCGATCCCAAAACGCCGCAACTGGCCATGTTCGATGAAGCGGAAAATGAC
CCTCTGCTGGCTGTAGTCGATGATGCCGATGAAGAAGTCGTTGTCCCGGTCAAGCGCCGTGGCAAGCGCAAGCCACTGGCGGCTAATCTGCCACGTATCG
AAGTTATCCATGAGTTGCCCGAACACGAACTGACCTGCACCTGCGGTTGCCGCAAGCATGTCATCGGCGAAGAAACCAGCGAGCAGCTCGATATCGTGCC
GATGCAGATCCGCGTACTCAAACACGTGCGCAAGATCTATGGCTGCCGTGGTTGCGAGACTGCTCCTGTCACTGCTGACAAGCCCGCCCAGTTAATCGAA
AAAAGCATGGCCAGCCCAAGCGTGCTGGCCATGCTGCTGACGACCAAGTACGTCGATGGCTTGCCGCTACACAGGTTTGAAAGTGTGCTGTCCCGCCACG
GCATCGAGATTCCACGACAAACCCTGGCGCGTTGGGTGATCCAGTGCAGTAAATACTTCCAGCCGCTGTTGAACCTGATGCGTGATCGGCTGCTGGAAAG
TCCGGTGATTCATTGCGATGAGACCCGCGTCCAGGTGTTGAAAGAACCGGATCGAGACCCGACCAGCCAATCCTGGATGTGGGTGCAAGCCAGTGGCCCG
CCTGATCGACAAGTTGTGCTGTTCGACTACACCACCAGCCGTGCGCAGGAAGTACCATTGCGTCTGCTGCAAGGCTATCGCGGCTATGTGATGACCGACG
ATTATGCGGGTTACAACGCTTTGGCGTTGCAGCCCGGTATCGAGCGACTGGCATGCATGGTTCACGCGCGCCGCAAGTTCGTCGAAGCACAAAAGGTGCA
GCCCAAGGGTAAGACCGGACGAGCCGATGTGGCGCTGACGATGATCAATAAGCTGTATGACATCGAGCGCGACCTCAAGGAGGTCAGCGACGAACAGCGG
TTCATCGGTCGCCAGGAAAGAAGCTTGCCGATCCTCGGTCAGCTGAAAAGCTGGCTGGACAAGACGTACGCCCAGGTGACGCCGCAAAGCGTATTGGGCA
AGGCGGTGCATTACCTGGCAAACAACTGGAGCCGCCTGGAACGGTATGTCGAAGCGGGCCATTTGCCAATCGACAACAACCTGGCAGAGCGCGCGATAAA
ACCGTTTGTCATTGGGCGTAAGGCTTGGCTGTTCAGTGACACGCCCAAGGGCGCCACGGCAAGTGCGCAGATATACAGCTTGGTCGAGACCGCCAAGGTC
AACGGCCAGGAGCCCTATACGTGGCTGCGCCACGTACTTGAGCGCCTGCCGTATGCGTCGTCGGTCTCAGACTACGAAGCCTTGCTGCCATGGAACTGCT
CGCCAGAGATACCACGGTAAGCTGAGGCCCTATCTTTTAGAAGGTGGGGTTCATGGATCGCACTC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
360 bp | 119 aa | 86 | 445 | + | No |
AG : IS66 TnpB
ORF sequence :
MMRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNKARNRIKVLYWERNGFCLWLKRLEAERFKMSPEPSDEAIVLTVQELNWLLD
GFDLWRNRPHQVLTPRYVA
GFDLWRNRPHQVLTPRYVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1557 bp | 518 aa | 464 | 2020 | + | No |
Chemistry : DDE
ORF sequence :
MISVPDNLPDDPALLKQLLLESYAARLREQEVNQAHIVQIDDLKEQIKLWRDRFFGRKSEQTVDPKTPQLAMFDEAENDPLLAVVDDADEEVVVPVKRRG
KRKPLAANLPRIEVIHELPEHELTCTCGCRKHVIGEETSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGL
PLHRFESVLSRHGIEIPRQTLARWVIQCSKYFQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLR
LLQGYRGYVMTDDYAGYNALALQPGIERLACMVHARRKFVEAQKVQPKGKTGRADVALTMINKLYDIERDLKEVSDEQRFIGRQERSLPILGQLKSWLDK
TYAQVTPQSVLGKAVHYLANNWSRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPYASS
VSDYEALLPWNCSPEIPR
KRKPLAANLPRIEVIHELPEHELTCTCGCRKHVIGEETSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGL
PLHRFESVLSRHGIEIPRQTLARWVIQCSKYFQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLR
LLQGYRGYVMTDDYAGYNALALQPGIERLACMVHARRKFVEAQKVQPKGKTGRADVALTMINKLYDIERDLKEVSDEQRFIGRQERSLPILGQLKSWLDK
TYAQVTPQSVLGKAVHYLANNWSRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPYASS
VSDYEALLPWNCSPEIPR
Blast result :
Comments
ISPa134 is 92% aa similar to ISPsy5.
ISPa134 was found in a ST235-Pseudomonas aeruginosa disrupting EXA2 gene of ExoU genomic island.
ISPa134 was found in a ST235-Pseudomonas aeruginosa disrupting EXA2 gene of ExoU genomic island.
References
1] Maria Lopez (2020) Direct submission.