ISLmo15

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP025565.1 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes strain 30/10/S
Listeria monocytogenes strain PIR00544
DNA section
IS Length : 1522 bp

Ends


IR Length : 14/15

IRL : CAGACTGTAGACAAAGTGAGAAATCATTTTATCTACAGTCTTTTTTGTTT
IRR : CAGACTGTAGAAAAACGGTCCTTCTCAAGCTTTAATATTTGAGAAGGACC

Comments : Ends based on empty insertion sites in other strains

Insertion site


Left flankDirect repeatRight flankDR Length
tttatcactccaacaaaaaaAGACAGCCGCAATGGCTGTCTttaaaattattttccatatt21
aaagaaatgttatgagtagaAGAGAAGACGAATATCGTCTTCTCTttttttatgtccatcctact25
tctatatttagtaaaacaaaAGCCCAAAATAAATTGTTTTGGGCTttttgtctggctatttattt25
tggttgctccaataatttaaAAAGGATAGCTAGTTTTTACTAGCTATCCTTTttaaatgaaggagtctcatt32
tttgtttcaatgaagcgaaaAAGCACTCATTAACGAGTGCTTttttatttagcgctttccat22
acttcaaaaaaacagcataaAAACTAAGGAGAAATCCTTAGTTTttttatgctgatttttttat24

DNA sequence

CAGACTGTAGACAAAGTGAGAAATCATTTTATCTACAGTCTTTTTTGTTTTATAATAATGTTAAGGCTTACATAAAACAACGAGGTGATTAAAATGCTTT
CTAAACATCAACAACAGGCGCGAAATCAATTAATAGCCATCTCTTTAGATGATTTGGTCCCAGAGGACCATTTAGTAAGAAAAATAGATAAGGTGATTAA
TTTTGATTTTATCTACCCATTAGTAGAACATACTTATTCTCATACAGGAAGACCTAGTGTAGACCCGGTAGTTCTTATAAAGCTAGTACTCATCCAATAT
CTTTTTGGCATCCGTTCCATGCGCCAAACTATAAAAGAAGTAGAAACGAACATGGCTTACCGCTGGTTTTTAGGATATGATTTCAATCAAAAAATCCCTC
ACTTCTCTACTTTTGGTAAAAATTACGTGCGACGTTTTGCAGAAACAGAGGTGTTCGAACACATTTTTTATCGCATTTTAAAACAAGCCATGGAGGCTGG
TTTAGTGGACCCTGACGTTGCGTTTGTGGACTCTACCCATGTGAAAGCCAATGCGAATAAACACAAATTTCATAAAAAATTGATTCGAAAAGAAACACGC
GTTTATCAAGAAGTACTAGAAGATGAAATTAATGTCAGCCGAGTTGCCGAAGGAAAAAAGCCATTCGCCAGGAAAGAAAGTCAGGAGGAGAAAGAAAGCA
AAATAAGTGATACGGATCCCGAAAGCGGCTACTATGTCAAAGGAGAACGGGAAAAACAATTTGCTTATTCTTTCCATACGGCTTGTGATACCAATGGTTT
TATTCTAGGTTCCATTGTCACTCCAGGTAATATTCATGATAGCCAACAATTGATTCCACTTATTGAAAAATTAAAAAACACCCTTTCTACCCCTTTGGTG
GTCGTTGCAGATGCTGGATATAAAACACCCATTATCGCTAAATACCTTTGGAGTCAAGGAATAGAAGCGGTGCTTCCGTATACTCGACCAAAAGGAAAAG
AAGGCTTATTTTCGAAACGAGCGTTTCTCTATGACCATTATTTAGACAGTTATCTTTGTCCAAATGAGGCATTGTTATCCTATGTTCGTACTACAAGAGA
TGGTTATCGTCTTTATAAATCTAATTCACTTCACTGTAGTAGTTGCGCTCTCTTAAAGGATTGCACGCAAAATAAACAAAAAGAAAAAATGATTTTACGA
CATCTTTGGGAGCCTTACTTAGAAGTTTCGGAGGAACTGCGCTACACAGAACAGCATAAAAAATGGTATAGACGCAGGAAAGAAACCATCGAAAGATGTT
TTGCGGATGCCAAAGAAAAGCATGGTATGAGATGGACTACTTATCGCGGACTTGCAAAAGTAACCCTCCAAGCGATGCTTACTTTTGCAGCCATGAACCT
GAAAAAAATGGCTAATTGGCTATGGAAAAAGGCGGTGCCTTTTTATTTTTTTGACTTTAAACAGAAAAAAACGGTCCTTCTCAAATATTAAAGCTTGAGA
AGGACCGTTTTTCTACAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1398 bp465 aa941491+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSKHQQQARNQLIAISLDDLVPEDHLVRKIDKVINFDFIYPLVEHTYSHTGRPSVDPVVLIKLVLIQYLFGIRSMRQTIKEVETNMAYRWFLGYDFNQK
IPHFSTFGKNYVRRFAETEVFEHIFYRILKQAMEAGLVDPDVAFVDSTHVKANANKHKFHKKLIRKETRVYQEVLEDEINVSRVAEGKKPFARKESQEEK
ESKISDTDPESGYYVKGEREKQFAYSFHTACDTNGFILGSIVTPGNIHDSQQLIPLIEKLKNTLSTPLVVVADAGYKTPIIAKYLWSQGIEAVLPYTRPK
GKEGLFSKRAFLYDHYLDSYLCPNEALLSYVRTTRDGYRLYKSNSLHCSSCALLKDCTQNKQKEKMILRHLWEPYLEVSEELRYTEQHKKWYRRRKETIE
RCFADAKEKHGMRWTTYRGLAKVTLQAMLTFAAMNLKKMANWLWKKAVPFYFFDFKQKKTVLLKY

 

Blast result :
Comments
ISLmo15 was identified by in silico sequence analysis of Listeria monocytogenes genomes.
Present in Listeria monocytogenes strain PIR00544 in multiple copies. ISLmo15 is 97% aa similar to ISLmo10.
References
1] Chmielowska, C. and Bartosik, D. (2020) Direct submission.
2] Portmann, A. C., Fournier, C., Gimonet, J., Ngom-Bru, C., Barretto, C., & Baert, L. (2018). Frontiers in microbiology, 9, 446.