ISLmo15
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP025565.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain 30/10/S Listeria monocytogenes strain PIR00544 |
DNA section
IS Length : 1522 bp
Ends
IR Length : 14/15
IRL : CAGACTGTAGACAAAGTGAGAAATCATTTTATCTACAGTCTTTTTTGTTT
IRR : CAGACTGTAGAAAAACGGTCCTTCTCAAGCTTTAATATTTGAGAAGGACC
Comments : Ends based on empty insertion sites in other strains
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tttatcactccaacaaaaaa | AGACAGCCGCAATGGCTGTCT | ttaaaattattttccatatt | 21 |
aaagaaatgttatgagtaga | AGAGAAGACGAATATCGTCTTCTCT | ttttttatgtccatcctact | 25 |
tctatatttagtaaaacaaa | AGCCCAAAATAAATTGTTTTGGGCT | ttttgtctggctatttattt | 25 |
tggttgctccaataatttaa | AAAGGATAGCTAGTTTTTACTAGCTATCCTTT | ttaaatgaaggagtctcatt | 32 |
tttgtttcaatgaagcgaaa | AAGCACTCATTAACGAGTGCTT | ttttatttagcgctttccat | 22 |
acttcaaaaaaacagcataa | AAACTAAGGAGAAATCCTTAGTTT | ttttatgctgatttttttat | 24 |
DNA sequence
CAGACTGTAGACAAAGTGAGAAATCATTTTATCTACAGTCTTTTTTGTTTTATAATAATGTTAAGGCTTACATAAAACAACGAGGTGATTAAAATGCTTT
CTAAACATCAACAACAGGCGCGAAATCAATTAATAGCCATCTCTTTAGATGATTTGGTCCCAGAGGACCATTTAGTAAGAAAAATAGATAAGGTGATTAA
TTTTGATTTTATCTACCCATTAGTAGAACATACTTATTCTCATACAGGAAGACCTAGTGTAGACCCGGTAGTTCTTATAAAGCTAGTACTCATCCAATAT
CTTTTTGGCATCCGTTCCATGCGCCAAACTATAAAAGAAGTAGAAACGAACATGGCTTACCGCTGGTTTTTAGGATATGATTTCAATCAAAAAATCCCTC
ACTTCTCTACTTTTGGTAAAAATTACGTGCGACGTTTTGCAGAAACAGAGGTGTTCGAACACATTTTTTATCGCATTTTAAAACAAGCCATGGAGGCTGG
TTTAGTGGACCCTGACGTTGCGTTTGTGGACTCTACCCATGTGAAAGCCAATGCGAATAAACACAAATTTCATAAAAAATTGATTCGAAAAGAAACACGC
GTTTATCAAGAAGTACTAGAAGATGAAATTAATGTCAGCCGAGTTGCCGAAGGAAAAAAGCCATTCGCCAGGAAAGAAAGTCAGGAGGAGAAAGAAAGCA
AAATAAGTGATACGGATCCCGAAAGCGGCTACTATGTCAAAGGAGAACGGGAAAAACAATTTGCTTATTCTTTCCATACGGCTTGTGATACCAATGGTTT
TATTCTAGGTTCCATTGTCACTCCAGGTAATATTCATGATAGCCAACAATTGATTCCACTTATTGAAAAATTAAAAAACACCCTTTCTACCCCTTTGGTG
GTCGTTGCAGATGCTGGATATAAAACACCCATTATCGCTAAATACCTTTGGAGTCAAGGAATAGAAGCGGTGCTTCCGTATACTCGACCAAAAGGAAAAG
AAGGCTTATTTTCGAAACGAGCGTTTCTCTATGACCATTATTTAGACAGTTATCTTTGTCCAAATGAGGCATTGTTATCCTATGTTCGTACTACAAGAGA
TGGTTATCGTCTTTATAAATCTAATTCACTTCACTGTAGTAGTTGCGCTCTCTTAAAGGATTGCACGCAAAATAAACAAAAAGAAAAAATGATTTTACGA
CATCTTTGGGAGCCTTACTTAGAAGTTTCGGAGGAACTGCGCTACACAGAACAGCATAAAAAATGGTATAGACGCAGGAAAGAAACCATCGAAAGATGTT
TTGCGGATGCCAAAGAAAAGCATGGTATGAGATGGACTACTTATCGCGGACTTGCAAAAGTAACCCTCCAAGCGATGCTTACTTTTGCAGCCATGAACCT
GAAAAAAATGGCTAATTGGCTATGGAAAAAGGCGGTGCCTTTTTATTTTTTTGACTTTAAACAGAAAAAAACGGTCCTTCTCAAATATTAAAGCTTGAGA
AGGACCGTTTTTCTACAGTCTG
CTAAACATCAACAACAGGCGCGAAATCAATTAATAGCCATCTCTTTAGATGATTTGGTCCCAGAGGACCATTTAGTAAGAAAAATAGATAAGGTGATTAA
TTTTGATTTTATCTACCCATTAGTAGAACATACTTATTCTCATACAGGAAGACCTAGTGTAGACCCGGTAGTTCTTATAAAGCTAGTACTCATCCAATAT
CTTTTTGGCATCCGTTCCATGCGCCAAACTATAAAAGAAGTAGAAACGAACATGGCTTACCGCTGGTTTTTAGGATATGATTTCAATCAAAAAATCCCTC
ACTTCTCTACTTTTGGTAAAAATTACGTGCGACGTTTTGCAGAAACAGAGGTGTTCGAACACATTTTTTATCGCATTTTAAAACAAGCCATGGAGGCTGG
TTTAGTGGACCCTGACGTTGCGTTTGTGGACTCTACCCATGTGAAAGCCAATGCGAATAAACACAAATTTCATAAAAAATTGATTCGAAAAGAAACACGC
GTTTATCAAGAAGTACTAGAAGATGAAATTAATGTCAGCCGAGTTGCCGAAGGAAAAAAGCCATTCGCCAGGAAAGAAAGTCAGGAGGAGAAAGAAAGCA
AAATAAGTGATACGGATCCCGAAAGCGGCTACTATGTCAAAGGAGAACGGGAAAAACAATTTGCTTATTCTTTCCATACGGCTTGTGATACCAATGGTTT
TATTCTAGGTTCCATTGTCACTCCAGGTAATATTCATGATAGCCAACAATTGATTCCACTTATTGAAAAATTAAAAAACACCCTTTCTACCCCTTTGGTG
GTCGTTGCAGATGCTGGATATAAAACACCCATTATCGCTAAATACCTTTGGAGTCAAGGAATAGAAGCGGTGCTTCCGTATACTCGACCAAAAGGAAAAG
AAGGCTTATTTTCGAAACGAGCGTTTCTCTATGACCATTATTTAGACAGTTATCTTTGTCCAAATGAGGCATTGTTATCCTATGTTCGTACTACAAGAGA
TGGTTATCGTCTTTATAAATCTAATTCACTTCACTGTAGTAGTTGCGCTCTCTTAAAGGATTGCACGCAAAATAAACAAAAAGAAAAAATGATTTTACGA
CATCTTTGGGAGCCTTACTTAGAAGTTTCGGAGGAACTGCGCTACACAGAACAGCATAAAAAATGGTATAGACGCAGGAAAGAAACCATCGAAAGATGTT
TTGCGGATGCCAAAGAAAAGCATGGTATGAGATGGACTACTTATCGCGGACTTGCAAAAGTAACCCTCCAAGCGATGCTTACTTTTGCAGCCATGAACCT
GAAAAAAATGGCTAATTGGCTATGGAAAAAGGCGGTGCCTTTTTATTTTTTTGACTTTAAACAGAAAAAAACGGTCCTTCTCAAATATTAAAGCTTGAGA
AGGACCGTTTTTCTACAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1398 bp | 465 aa | 94 | 1491 | + | No |
Chemistry : DDE
ORF sequence :
MLSKHQQQARNQLIAISLDDLVPEDHLVRKIDKVINFDFIYPLVEHTYSHTGRPSVDPVVLIKLVLIQYLFGIRSMRQTIKEVETNMAYRWFLGYDFNQK
IPHFSTFGKNYVRRFAETEVFEHIFYRILKQAMEAGLVDPDVAFVDSTHVKANANKHKFHKKLIRKETRVYQEVLEDEINVSRVAEGKKPFARKESQEEK
ESKISDTDPESGYYVKGEREKQFAYSFHTACDTNGFILGSIVTPGNIHDSQQLIPLIEKLKNTLSTPLVVVADAGYKTPIIAKYLWSQGIEAVLPYTRPK
GKEGLFSKRAFLYDHYLDSYLCPNEALLSYVRTTRDGYRLYKSNSLHCSSCALLKDCTQNKQKEKMILRHLWEPYLEVSEELRYTEQHKKWYRRRKETIE
RCFADAKEKHGMRWTTYRGLAKVTLQAMLTFAAMNLKKMANWLWKKAVPFYFFDFKQKKTVLLKY
IPHFSTFGKNYVRRFAETEVFEHIFYRILKQAMEAGLVDPDVAFVDSTHVKANANKHKFHKKLIRKETRVYQEVLEDEINVSRVAEGKKPFARKESQEEK
ESKISDTDPESGYYVKGEREKQFAYSFHTACDTNGFILGSIVTPGNIHDSQQLIPLIEKLKNTLSTPLVVVADAGYKTPIIAKYLWSQGIEAVLPYTRPK
GKEGLFSKRAFLYDHYLDSYLCPNEALLSYVRTTRDGYRLYKSNSLHCSSCALLKDCTQNKQKEKMILRHLWEPYLEVSEELRYTEQHKKWYRRRKETIE
RCFADAKEKHGMRWTTYRGLAKVTLQAMLTFAAMNLKKMANWLWKKAVPFYFFDFKQKKTVLLKY
Blast result :
Comments
ISLmo15 was identified by in silico sequence analysis of Listeria monocytogenes genomes.
Present in Listeria monocytogenes strain PIR00544 in multiple copies. ISLmo15 is 97% aa similar to ISLmo10.
Present in Listeria monocytogenes strain PIR00544 in multiple copies. ISLmo15 is 97% aa similar to ISLmo10.
References
1] Chmielowska, C. and Bartosik, D. (2020) Direct submission.
2] Portmann, A. C., Fournier, C., Gimonet, J., Ngom-Bru, C., Barretto, C., & Baert, L. (2018). Frontiers in microbiology, 9, 446.
2] Portmann, A. C., Fournier, C., Gimonet, J., Ngom-Bru, C., Barretto, C., & Baert, L. (2018). Frontiers in microbiology, 9, 446.