ISChja3

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN651368.1 ND Chromohalobacter japonicus
Chromohalobacter japonicus CJ
DNA section
IS Length : 1087 bp

Ends


IR Length : 19/21

IRL : GCAAATTCTGAGTGCAACACCTGACCGAATCGGTAAGGTGTTGTACCCAT
IRR : GCAGGTTCTGAGTGCAACACCGTCAATGCATTGATGACGGAGCCTCATGG

Insertion site


Left flankDirect repeatRight flankDR Length
GATCTTGGCCATCCGCCGAT0

DNA sequence

GCAAATTCTGAGTGCAACACCTGACCGAATCGGTAAGGTGTTGTACCCATGTCATATTCTGAACTCTGCATCGAAGAACGTGCGACGATCCAGGTCAGCC
TCGCGCAGGGCTTGAGCATCAGGAAGATGGCGGCTCTGCTCGAGCGGTCTCCGTCGACGATCAGCCGAGAGATACGCCGCAATGTAGCGCCCGATGGCAG
ATATCGTGTGTCACATGCACAACAGCGTCGCCAGGATCGCCGGACAGTCTGCCGGCCAAGGCGCAAGCTGCTTCCTGGAAGTCCACGCTTCGTCTTGATT
CAGCACATGCTGCGTCAGCGCTTGTCCCCCGAGCAGATCAGCGGCAAGCTCAAGCATATGAATATCCCTGACCTCCGAGACGCCTACGTCTGCCGTGAAA
CGATCTACAACGCCATCTATGCGTTGCCCGTCGGCGAGCTACGAAAAGAGTTGATCCACTGCCTGCGGCAAGGAAAATCGACTCGCAAGCCGCGGCGTGG
GCAAGTTGACCGGCGCAACCAGATCCCTGATATGGTCAGCATTCACCTTCGCCCTCCCGAGGTGGAGAAACGTGAATTCCCGGGGCACTGGGAAGGTGAT
CTGATCAAAGGCAAGGGCAATGCATCGGCTGTCGGCACCCTTGTCGAGCTGAAAAGCGGTTACCTGATCCTGGCCAAGATGCACGATGGGACCGCTACCT
CTGCCGTGGAAGGCTTTAGTGCTGCACTGAACCGCATGCCGTTGGCTGCACGAAAGAGCATGACGTATGACCAAGGGCGCGAAATGACGCAGCACGCCCA
GATTACCCAGAATACCGGTGTTGCCATCTATTTCTGTGACCCGCATAGCCCGTGGCAGAGAGGCGCCAACGAAAATATCAATGGTCTCATACGGCAGTAC
TTGCCCAAGGGAACGGACCTATCGGTCTACAGCCAGCAAGAACTGGATGAGATCGCTCTTGAGCTGAACATGCGCCCGCGGAAGCGCTTCGACTTCAAGT
GTCCCATTGAAATGATGAGCGAACTGATGGCGCAGTACCATGAGGCTCCGTCATCAATGCATTGACGGTGTTGCACTCAGAACCTGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa491065+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYSELCIEERATIQVSLAQGLSIRKMAALLERSPSTISREIRRNVAPDGRYRVSHAQQRRQDRRTVCRPRRKLLPGSPRFVLIQHMLRQRLSPEQISGK
LKHMNIPDLRDAYVCRETIYNAIYALPVGELRKELIHCLRQGKSTRKPRRGQVDRRNQIPDMVSIHLRPPEVEKREFPGHWEGDLIKGKGNASAVGTLVE
LKSGYLILAKMHDGTATSAVEGFSAALNRMPLAARKSMTYDQGREMTQHAQITQNTGVAIYFCDPHSPWQRGANENINGLIRQYLPKGTDLSVYSQQELD
EIALELNMRPRKRFDFKCPIEMMSELMAQYHEAPSSMH

 

Blast result :
Comments
ISChja3 is 86% aa similar to ISPsp4.
References
1] Sarah Sonbol (2020) Direct submission.
2] Urmite Genomes (2014) Direct GenBank submission.