ISChja3
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN651368.1 | ND | Chromohalobacter japonicus | Chromohalobacter japonicus CJ |
DNA section
IS Length : 1087 bp
Ends
IR Length : 19/21
IRL : GCAAATTCTGAGTGCAACACCTGACCGAATCGGTAAGGTGTTGTACCCAT
IRR : GCAGGTTCTGAGTGCAACACCGTCAATGCATTGATGACGGAGCCTCATGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCTTGGCC | ATCCGCCGAT | 0 |
DNA sequence
GCAAATTCTGAGTGCAACACCTGACCGAATCGGTAAGGTGTTGTACCCATGTCATATTCTGAACTCTGCATCGAAGAACGTGCGACGATCCAGGTCAGCC
TCGCGCAGGGCTTGAGCATCAGGAAGATGGCGGCTCTGCTCGAGCGGTCTCCGTCGACGATCAGCCGAGAGATACGCCGCAATGTAGCGCCCGATGGCAG
ATATCGTGTGTCACATGCACAACAGCGTCGCCAGGATCGCCGGACAGTCTGCCGGCCAAGGCGCAAGCTGCTTCCTGGAAGTCCACGCTTCGTCTTGATT
CAGCACATGCTGCGTCAGCGCTTGTCCCCCGAGCAGATCAGCGGCAAGCTCAAGCATATGAATATCCCTGACCTCCGAGACGCCTACGTCTGCCGTGAAA
CGATCTACAACGCCATCTATGCGTTGCCCGTCGGCGAGCTACGAAAAGAGTTGATCCACTGCCTGCGGCAAGGAAAATCGACTCGCAAGCCGCGGCGTGG
GCAAGTTGACCGGCGCAACCAGATCCCTGATATGGTCAGCATTCACCTTCGCCCTCCCGAGGTGGAGAAACGTGAATTCCCGGGGCACTGGGAAGGTGAT
CTGATCAAAGGCAAGGGCAATGCATCGGCTGTCGGCACCCTTGTCGAGCTGAAAAGCGGTTACCTGATCCTGGCCAAGATGCACGATGGGACCGCTACCT
CTGCCGTGGAAGGCTTTAGTGCTGCACTGAACCGCATGCCGTTGGCTGCACGAAAGAGCATGACGTATGACCAAGGGCGCGAAATGACGCAGCACGCCCA
GATTACCCAGAATACCGGTGTTGCCATCTATTTCTGTGACCCGCATAGCCCGTGGCAGAGAGGCGCCAACGAAAATATCAATGGTCTCATACGGCAGTAC
TTGCCCAAGGGAACGGACCTATCGGTCTACAGCCAGCAAGAACTGGATGAGATCGCTCTTGAGCTGAACATGCGCCCGCGGAAGCGCTTCGACTTCAAGT
GTCCCATTGAAATGATGAGCGAACTGATGGCGCAGTACCATGAGGCTCCGTCATCAATGCATTGACGGTGTTGCACTCAGAACCTGC
TCGCGCAGGGCTTGAGCATCAGGAAGATGGCGGCTCTGCTCGAGCGGTCTCCGTCGACGATCAGCCGAGAGATACGCCGCAATGTAGCGCCCGATGGCAG
ATATCGTGTGTCACATGCACAACAGCGTCGCCAGGATCGCCGGACAGTCTGCCGGCCAAGGCGCAAGCTGCTTCCTGGAAGTCCACGCTTCGTCTTGATT
CAGCACATGCTGCGTCAGCGCTTGTCCCCCGAGCAGATCAGCGGCAAGCTCAAGCATATGAATATCCCTGACCTCCGAGACGCCTACGTCTGCCGTGAAA
CGATCTACAACGCCATCTATGCGTTGCCCGTCGGCGAGCTACGAAAAGAGTTGATCCACTGCCTGCGGCAAGGAAAATCGACTCGCAAGCCGCGGCGTGG
GCAAGTTGACCGGCGCAACCAGATCCCTGATATGGTCAGCATTCACCTTCGCCCTCCCGAGGTGGAGAAACGTGAATTCCCGGGGCACTGGGAAGGTGAT
CTGATCAAAGGCAAGGGCAATGCATCGGCTGTCGGCACCCTTGTCGAGCTGAAAAGCGGTTACCTGATCCTGGCCAAGATGCACGATGGGACCGCTACCT
CTGCCGTGGAAGGCTTTAGTGCTGCACTGAACCGCATGCCGTTGGCTGCACGAAAGAGCATGACGTATGACCAAGGGCGCGAAATGACGCAGCACGCCCA
GATTACCCAGAATACCGGTGTTGCCATCTATTTCTGTGACCCGCATAGCCCGTGGCAGAGAGGCGCCAACGAAAATATCAATGGTCTCATACGGCAGTAC
TTGCCCAAGGGAACGGACCTATCGGTCTACAGCCAGCAAGAACTGGATGAGATCGCTCTTGAGCTGAACATGCGCCCGCGGAAGCGCTTCGACTTCAAGT
GTCCCATTGAAATGATGAGCGAACTGATGGCGCAGTACCATGAGGCTCCGTCATCAATGCATTGACGGTGTTGCACTCAGAACCTGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 49 | 1065 | + | No |
Chemistry : DDE
ORF sequence :
MSYSELCIEERATIQVSLAQGLSIRKMAALLERSPSTISREIRRNVAPDGRYRVSHAQQRRQDRRTVCRPRRKLLPGSPRFVLIQHMLRQRLSPEQISGK
LKHMNIPDLRDAYVCRETIYNAIYALPVGELRKELIHCLRQGKSTRKPRRGQVDRRNQIPDMVSIHLRPPEVEKREFPGHWEGDLIKGKGNASAVGTLVE
LKSGYLILAKMHDGTATSAVEGFSAALNRMPLAARKSMTYDQGREMTQHAQITQNTGVAIYFCDPHSPWQRGANENINGLIRQYLPKGTDLSVYSQQELD
EIALELNMRPRKRFDFKCPIEMMSELMAQYHEAPSSMH
LKHMNIPDLRDAYVCRETIYNAIYALPVGELRKELIHCLRQGKSTRKPRRGQVDRRNQIPDMVSIHLRPPEVEKREFPGHWEGDLIKGKGNASAVGTLVE
LKSGYLILAKMHDGTATSAVEGFSAALNRMPLAARKSMTYDQGREMTQHAQITQNTGVAIYFCDPHSPWQRGANENINGLIRQYLPKGTDLSVYSQQELD
EIALELNMRPRKRFDFKCPIEMMSELMAQYHEAPSSMH
Blast result :
Comments
ISChja3 is 86% aa similar to ISPsp4.
References
1] Sarah Sonbol (2020) Direct submission.
2] Urmite Genomes (2014) Direct GenBank submission.
2] Urmite Genomes (2014) Direct GenBank submission.