ISChja1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CDGZ01000012 | ND | Chromohalobacter japonicus | Chromohalobacter japonicus CJ |
DNA section
IS Length : 1718 bp
Ends
IR Length : 15/18
IRL : CCCGGCTTATTCATGAGGCCGGCCCGAAAACGAAGATAGCGGATGGTATT
IRR : CCCGCCTCATTCACGAGGGTGCTGATTGAGCGGTCTGAAGGTACTGACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACTCCTTGTCATGGCCATATTCAC | TTAAT | CGCAGTTTGCGATAAGGGGCGCAAA | 5 |
DNA sequence
CCCGGCTTATTCATGAGGCCGGCCCGAAAACGAAGATAGCGGATGGTATTCTCTTGAAAATTCAGTGTGTTCCGCCAAGAATCTGAACCAAGAGAGCCAT
CCGCTATGGGTGAAAGCCTATCCACCTGGACGCCCTCATGCAACGGCGCTGTCCGTGTTGAGCTGAGCGGCCAGCGCACTACCAGCGACAGCGGCGCTCT
GCTGTTGCGTGAGGCCCTCGACAACAGCGGCGTGATTGAGGCGCTGGAAGACAATCTGGTCGACCTCCGCAACCCGCTACGCATCCACCACTCGCTGGCC
AGTCAGTTGCGGACCTTGGTGCTGCAACGGGCGATGGGCTGGATCGATCTCAGCGATACCGACACGCTGCGCCATGACCCGCTCTGGCAGTTGGCCTGCA
GCGACTCGCGCGGGATGACGCCCCTGGCCCAGCACCGGCCGTCTCAAGCCACGTTGTCGCGGCTGCTGAGCTGCCTTGGCCGCAACGACAATATCGATGC
CGTGCATGAAGGCCTACTGCGGCTGGTGGTCTGGCGCCTGACCTCGCTGAAGAACGGTGAGCGTCCCAAGCAGCTGACGCTGGACATCGATGGCCTGCCG
ATCGAGGTGCATGGCCACCAGGGCGGGTCGGCCTATCATGGCCTGTACGGGGCCCGTATCTACTCGCCGCTGGTCGCCTCACTGGCTGAAACCGGCGACA
TGGTGGGTGGGCTGCTGCGCGAGGGCAACGCCGGCCCGGCCGAGAATGCCGACACCTGGATCCCCCATCTGGTGCGGCGACTCAACGAGAGCACCGGCGC
TCAGGTTCGCGTCCGCATCGACGCCGGTTTCACCGACAACGCGACGCTGGAAGCCATGGAAGAGCGCGATATCGAGTATCTGGGCCGGCTGCGCAGTCAC
ACTGGCCTACAGAAGTTGGCAGCGCCACTTCTGAAGCGGCCACCTGGCCGGCCACCCGAGCAGCCTCGCGAGTGGTGCCACGATCTGGAGTATCAAGCGG
GCTCTTGGTCGGCACCGCGTCGCGTCGTGCTGGTGGTGCAGGAACGCCCCGATGACCTGCTGCTGCATGCCTTCTTCCTGGTCACCAACCTCGGCAAGTT
CGACTGGCCGCCGGAGAAGGTCCTGGCGCTCTACCGCAAGCGCGGCAGCGCCGAGGCGCACATGGGCGAGGTGAAGTCGGCGCTCGACGTGCACCTCTCG
TCGACCGATCGCGGCGCCTCCACCGTTCAGGACGTGATGGCACGCAACGAGGTGAGCCTGCTGCTCAGCCTCTACGCCTACCAGGTCCTGCATGGCCTGC
GCTGCCTGCTGGAGCGGCAGACCCGGCAAGGCTGGAGCCTCAGCCGGATGCGCGAGCAGGTGCTGAAGGTCGCCGCCACGCTGAGACTGCACGCTCGGCG
AATCACCGTTCATCTGGGTGCCGCCGCCGACAAGTGGTGGCCGACGCTGCTGAAGGGGCTGCCGAAGCTGACCGCACTGAGCTGACGCTTCTGCGAGACC
ACCACAGCATCAGAAAGCGAGCGACCGGAGCGGCGGGCGGCGATCACGGCTGCTTGGACGGTCGCCATTGATTCCAAAGAGCTATAAGGAAGCGGGGAAA
TTTCAGCGTTTTGGCATTACTCAACAGCTATTCGCGCTGAAGAAGCCGATCCTGATAAGCGATGCCACCAGTCAGTACCTTCAGACCGCTCAATCAGCAC
CCTCGTGAATGAGGCGGG
CCGCTATGGGTGAAAGCCTATCCACCTGGACGCCCTCATGCAACGGCGCTGTCCGTGTTGAGCTGAGCGGCCAGCGCACTACCAGCGACAGCGGCGCTCT
GCTGTTGCGTGAGGCCCTCGACAACAGCGGCGTGATTGAGGCGCTGGAAGACAATCTGGTCGACCTCCGCAACCCGCTACGCATCCACCACTCGCTGGCC
AGTCAGTTGCGGACCTTGGTGCTGCAACGGGCGATGGGCTGGATCGATCTCAGCGATACCGACACGCTGCGCCATGACCCGCTCTGGCAGTTGGCCTGCA
GCGACTCGCGCGGGATGACGCCCCTGGCCCAGCACCGGCCGTCTCAAGCCACGTTGTCGCGGCTGCTGAGCTGCCTTGGCCGCAACGACAATATCGATGC
CGTGCATGAAGGCCTACTGCGGCTGGTGGTCTGGCGCCTGACCTCGCTGAAGAACGGTGAGCGTCCCAAGCAGCTGACGCTGGACATCGATGGCCTGCCG
ATCGAGGTGCATGGCCACCAGGGCGGGTCGGCCTATCATGGCCTGTACGGGGCCCGTATCTACTCGCCGCTGGTCGCCTCACTGGCTGAAACCGGCGACA
TGGTGGGTGGGCTGCTGCGCGAGGGCAACGCCGGCCCGGCCGAGAATGCCGACACCTGGATCCCCCATCTGGTGCGGCGACTCAACGAGAGCACCGGCGC
TCAGGTTCGCGTCCGCATCGACGCCGGTTTCACCGACAACGCGACGCTGGAAGCCATGGAAGAGCGCGATATCGAGTATCTGGGCCGGCTGCGCAGTCAC
ACTGGCCTACAGAAGTTGGCAGCGCCACTTCTGAAGCGGCCACCTGGCCGGCCACCCGAGCAGCCTCGCGAGTGGTGCCACGATCTGGAGTATCAAGCGG
GCTCTTGGTCGGCACCGCGTCGCGTCGTGCTGGTGGTGCAGGAACGCCCCGATGACCTGCTGCTGCATGCCTTCTTCCTGGTCACCAACCTCGGCAAGTT
CGACTGGCCGCCGGAGAAGGTCCTGGCGCTCTACCGCAAGCGCGGCAGCGCCGAGGCGCACATGGGCGAGGTGAAGTCGGCGCTCGACGTGCACCTCTCG
TCGACCGATCGCGGCGCCTCCACCGTTCAGGACGTGATGGCACGCAACGAGGTGAGCCTGCTGCTCAGCCTCTACGCCTACCAGGTCCTGCATGGCCTGC
GCTGCCTGCTGGAGCGGCAGACCCGGCAAGGCTGGAGCCTCAGCCGGATGCGCGAGCAGGTGCTGAAGGTCGCCGCCACGCTGAGACTGCACGCTCGGCG
AATCACCGTTCATCTGGGTGCCGCCGCCGACAAGTGGTGGCCGACGCTGCTGAAGGGGCTGCCGAAGCTGACCGCACTGAGCTGACGCTTCTGCGAGACC
ACCACAGCATCAGAAAGCGAGCGACCGGAGCGGCGGGCGGCGATCACGGCTGCTTGGACGGTCGCCATTGATTCCAAAGAGCTATAAGGAAGCGGGGAAA
TTTCAGCGTTTTGGCATTACTCAACAGCTATTCGCGCTGAAGAAGCCGATCCTGATAAGCGATGCCACCAGTCAGTACCTTCAGACCGCTCAATCAGCAC
CCTCGTGAATGAGGCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1380 bp | 459 aa | 106 | 1485 | - | No |
Chemistry : DDE
ORF sequence :
MGESLSTWTPSCNGAVRVELSGQRTTSDSGALLLREALDNSGVIEALEDNLVDLRNPLRIHHSLASQLRTLVLQRAMGWIDLSDTDTLRHDPLWQLACSD
SRGMTPLAQHRPSQATLSRLLSCLGRNDNIDAVHEGLLRLVVWRLTSLKNGERPKQLTLDIDGLPIEVHGHQGGSAYHGLYGARIYSPLVASLAETGDMV
GGLLREGNAGPAENADTWIPHLVRRLNESTGAQVRVRIDAGFTDNATLEAMEERDIEYLGRLRSHTGLQKLAAPLLKRPPGRPPEQPREWCHDLEYQAGS
WSAPRRVVLVVQERPDDLLLHAFFLVTNLGKFDWPPEKVLALYRKRGSAEAHMGEVKSALDVHLSSTDRGASTVQDVMARNEVSLLLSLYAYQVLHGLRC
LLERQTRQGWSLSRMREQVLKVAATLRLHARRITVHLGAAADKWWPTLLKGLPKLTALS
SRGMTPLAQHRPSQATLSRLLSCLGRNDNIDAVHEGLLRLVVWRLTSLKNGERPKQLTLDIDGLPIEVHGHQGGSAYHGLYGARIYSPLVASLAETGDMV
GGLLREGNAGPAENADTWIPHLVRRLNESTGAQVRVRIDAGFTDNATLEAMEERDIEYLGRLRSHTGLQKLAAPLLKRPPGRPPEQPREWCHDLEYQAGS
WSAPRRVVLVVQERPDDLLLHAFFLVTNLGKFDWPPEKVLALYRKRGSAEAHMGEVKSALDVHLSSTDRGASTVQDVMARNEVSLLLSLYAYQVLHGLRC
LLERQTRQGWSLSRMREQVLKVAATLRLHARRITVHLGAAADKWWPTLLKGLPKLTALS
Blast result :
Comments
ISChja1 is 97% aa similar to ISPsp9.
References
1] Sarah Sonbol (2020) Direct submission.
2] Urmite Genomes (2014) Direct GenBank submission.
2] Urmite Genomes (2014) Direct GenBank submission.