ISChja1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CDGZ01000012 ND Chromohalobacter japonicus
Chromohalobacter japonicus CJ
DNA section
IS Length : 1718 bp

Ends


IR Length : 15/18

IRL : CCCGGCTTATTCATGAGGCCGGCCCGAAAACGAAGATAGCGGATGGTATT
IRR : CCCGCCTCATTCACGAGGGTGCTGATTGAGCGGTCTGAAGGTACTGACTG

Insertion site


Left flankDirect repeatRight flankDR Length
GACTCCTTGTCATGGCCATATTCACTTAATCGCAGTTTGCGATAAGGGGCGCAAA5

DNA sequence

CCCGGCTTATTCATGAGGCCGGCCCGAAAACGAAGATAGCGGATGGTATTCTCTTGAAAATTCAGTGTGTTCCGCCAAGAATCTGAACCAAGAGAGCCAT
CCGCTATGGGTGAAAGCCTATCCACCTGGACGCCCTCATGCAACGGCGCTGTCCGTGTTGAGCTGAGCGGCCAGCGCACTACCAGCGACAGCGGCGCTCT
GCTGTTGCGTGAGGCCCTCGACAACAGCGGCGTGATTGAGGCGCTGGAAGACAATCTGGTCGACCTCCGCAACCCGCTACGCATCCACCACTCGCTGGCC
AGTCAGTTGCGGACCTTGGTGCTGCAACGGGCGATGGGCTGGATCGATCTCAGCGATACCGACACGCTGCGCCATGACCCGCTCTGGCAGTTGGCCTGCA
GCGACTCGCGCGGGATGACGCCCCTGGCCCAGCACCGGCCGTCTCAAGCCACGTTGTCGCGGCTGCTGAGCTGCCTTGGCCGCAACGACAATATCGATGC
CGTGCATGAAGGCCTACTGCGGCTGGTGGTCTGGCGCCTGACCTCGCTGAAGAACGGTGAGCGTCCCAAGCAGCTGACGCTGGACATCGATGGCCTGCCG
ATCGAGGTGCATGGCCACCAGGGCGGGTCGGCCTATCATGGCCTGTACGGGGCCCGTATCTACTCGCCGCTGGTCGCCTCACTGGCTGAAACCGGCGACA
TGGTGGGTGGGCTGCTGCGCGAGGGCAACGCCGGCCCGGCCGAGAATGCCGACACCTGGATCCCCCATCTGGTGCGGCGACTCAACGAGAGCACCGGCGC
TCAGGTTCGCGTCCGCATCGACGCCGGTTTCACCGACAACGCGACGCTGGAAGCCATGGAAGAGCGCGATATCGAGTATCTGGGCCGGCTGCGCAGTCAC
ACTGGCCTACAGAAGTTGGCAGCGCCACTTCTGAAGCGGCCACCTGGCCGGCCACCCGAGCAGCCTCGCGAGTGGTGCCACGATCTGGAGTATCAAGCGG
GCTCTTGGTCGGCACCGCGTCGCGTCGTGCTGGTGGTGCAGGAACGCCCCGATGACCTGCTGCTGCATGCCTTCTTCCTGGTCACCAACCTCGGCAAGTT
CGACTGGCCGCCGGAGAAGGTCCTGGCGCTCTACCGCAAGCGCGGCAGCGCCGAGGCGCACATGGGCGAGGTGAAGTCGGCGCTCGACGTGCACCTCTCG
TCGACCGATCGCGGCGCCTCCACCGTTCAGGACGTGATGGCACGCAACGAGGTGAGCCTGCTGCTCAGCCTCTACGCCTACCAGGTCCTGCATGGCCTGC
GCTGCCTGCTGGAGCGGCAGACCCGGCAAGGCTGGAGCCTCAGCCGGATGCGCGAGCAGGTGCTGAAGGTCGCCGCCACGCTGAGACTGCACGCTCGGCG
AATCACCGTTCATCTGGGTGCCGCCGCCGACAAGTGGTGGCCGACGCTGCTGAAGGGGCTGCCGAAGCTGACCGCACTGAGCTGACGCTTCTGCGAGACC
ACCACAGCATCAGAAAGCGAGCGACCGGAGCGGCGGGCGGCGATCACGGCTGCTTGGACGGTCGCCATTGATTCCAAAGAGCTATAAGGAAGCGGGGAAA
TTTCAGCGTTTTGGCATTACTCAACAGCTATTCGCGCTGAAGAAGCCGATCCTGATAAGCGATGCCACCAGTCAGTACCTTCAGACCGCTCAATCAGCAC
CCTCGTGAATGAGGCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1380 bp459 aa1061485-No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGESLSTWTPSCNGAVRVELSGQRTTSDSGALLLREALDNSGVIEALEDNLVDLRNPLRIHHSLASQLRTLVLQRAMGWIDLSDTDTLRHDPLWQLACSD
SRGMTPLAQHRPSQATLSRLLSCLGRNDNIDAVHEGLLRLVVWRLTSLKNGERPKQLTLDIDGLPIEVHGHQGGSAYHGLYGARIYSPLVASLAETGDMV
GGLLREGNAGPAENADTWIPHLVRRLNESTGAQVRVRIDAGFTDNATLEAMEERDIEYLGRLRSHTGLQKLAAPLLKRPPGRPPEQPREWCHDLEYQAGS
WSAPRRVVLVVQERPDDLLLHAFFLVTNLGKFDWPPEKVLALYRKRGSAEAHMGEVKSALDVHLSSTDRGASTVQDVMARNEVSLLLSLYAYQVLHGLRC
LLERQTRQGWSLSRMREQVLKVAATLRLHARRITVHLGAAADKWWPTLLKGLPKLTALS

 

Blast result :
Comments
ISChja1 is 97% aa similar to ISPsp9.
References
1] Sarah Sonbol (2020) Direct submission.
2] Urmite Genomes (2014) Direct GenBank submission.