ISSaco1
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ASAI01000065 | ND | Salinovibrio costicola | Salinovibrio costicola ATCC33508 |
DNA section
IS Length : 1764 bp
Ends
IR Length : 20/27
IRL : CCGTCATTCCGCAGCGAATTAATGAATTTAAATAGTGTGATCCAGCGATC
IRR : CCGAGTTTCCGCACCTAATTTAGGAATAAACCGCTTCGTATAACTGGCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NAAAAGAGNACACAACTTCGACCNTAATAT | ATGTAGAGATACTACGCCAAAATTATAACAGA | 0 | |
TCATCATGGTTTATTCTCCCTAGTGATAAT | ATAATCAACGTAATTGACCAATTCGACATTCA | 0 | |
ACGACCAGCTACTGGAGCGATGGTTTTTAC | ATGTAGAGATACTACGCCAAAATTATAACAGA | 0 |
DNA sequence
CCGTCATTCCGCAGCGAATTAATGAATTTAAATAGTGTGATCCAGCGATCATTTACAGCTTTTAGTGTCACAGATGTCTTGACCGTGATCCCTCGCTTTG
ATCTATTACTGCTATTTAACGGTCGCTTACTATGCCTACTCCTCAACCTGTCATCAAACGCCTCGATCATCTAGGGCTAATCGCTGCTTTCTGTCGTGAA
GTTGGCTTACCAGATATTATCGACCGTATCATTCCTAAGTACTCCGAGCACAAGGTTTCACATGGTGATGCCGTCTTAGCGATGATCCTAAATGGGCTGG
GTTTTCACAGTAGAACCCTGCATATGTTTTCCGACTTTTTCGAAACGAAGCCTGTTTCCAAATTGCTAGCCAAAGACATTGAAGCGCACCATTTAACGGA
TGATGTCCTTGGGCGCACGCTTGATGCTTTATATGAAGCGGATGTGTCCGCACTTTATCAAGCGATTGCTGAGCATGTTGTTGATAAACTGGGACTTAAA
GCGGACTCTGTCCATCTTGATATCACAAGCTTTCATGTTGATGGAGAATACGCCCAAGACGACGATATCAATGCGATTAAACTGGTAAAAGGCTACAGCC
GAGACCACCGTCCAGAGCTAAACCAAGTGGTCCTTGAGCTGATTTGTGAAAATCAAGCAGGCCTGCCTGTTTACATGCAAGCACTCAGTGGTAACACCAA
TGATGCGAAGGCGTTTTCTGAGGTCACTAAGAAGCATATTCACTGTTTAAAAGCGGCTCAAAATAGTCGCTATTTTATCGCCGATGCCGCCCTGTACACG
GAAGACAGCATTCGCTCTTTGGATGAACAAAAACAGAAATTCATTACTCGTGTGCCAATGACGATTAAGTCTGCCAAAGAAGCCTTGCTGGCGCTTAGAC
CTGAGCAGTTAACCCATATCGGTAACGGCTATTCAGGTTGCTGGATTGACGCTAACTATGGCGCAGTCACTCAAAAATGGTTGTTGGTTCATAGCGAGCA
AGCGACGAAGCGAGAAGAAATAACGTTCTACAAGAACTTAGATAAAAATGCTGCCAAAGAGCTGAAAGCCCTGGGCCAACTTATGAAAAAAGAGTTTGCT
TGTGCAATGGATGCCGAGCAGGCAATCGATGACTTTGCAAACCAATGTCACCTCATTGGCTTTGCACAAAAAACCATCATTAAAGAGGCTGTCTATGCGG
GTCGCGGTCGCCCTAAAAAGGGGGCTAAGCCAACGGGATACCGCTACTTTATTGATGCCACGCCTTATACCGATCTAGATAAAGTGAAACTGGCTAAGCT
TAAAGTGGGTATGTTTATCCTTGCTACCAACGATACTGACAGTACGGATCTGACCATGGCTGCATTGCTTGAACATTACAAATCCCAACAAAAAGTAGAG
CGCGGCTTTCGTTTTTTGAAAAGCCCNGAGTTTTTAACGTCTTCGATCTTCTTAAAAAAACCTCAACGCATTGAGGCTCTGCTCATGATAATGACGCTTA
GCCTTCTTGTTTACGCAAGTCTAGAGCACAAAATCAGAGAGCAACTTAACAAGACAGAAGCGTTCTTCCCAAGCATGGTGAAGAACAAAACAACGACTAA
ACCGACGGCACGTTGGGTATTCTTAAAATTTGAAGGGATCGACACACTCGAACTCGACGGTCAGAGCTTCATAACCGGTGTACGAGAGCATCAACGACGA
TTACTGAAATTGTTGGGCCAGTTATACGAAGCGGTTTATTCCTAAATTAGGTGCGGAAACTCGG
ATCTATTACTGCTATTTAACGGTCGCTTACTATGCCTACTCCTCAACCTGTCATCAAACGCCTCGATCATCTAGGGCTAATCGCTGCTTTCTGTCGTGAA
GTTGGCTTACCAGATATTATCGACCGTATCATTCCTAAGTACTCCGAGCACAAGGTTTCACATGGTGATGCCGTCTTAGCGATGATCCTAAATGGGCTGG
GTTTTCACAGTAGAACCCTGCATATGTTTTCCGACTTTTTCGAAACGAAGCCTGTTTCCAAATTGCTAGCCAAAGACATTGAAGCGCACCATTTAACGGA
TGATGTCCTTGGGCGCACGCTTGATGCTTTATATGAAGCGGATGTGTCCGCACTTTATCAAGCGATTGCTGAGCATGTTGTTGATAAACTGGGACTTAAA
GCGGACTCTGTCCATCTTGATATCACAAGCTTTCATGTTGATGGAGAATACGCCCAAGACGACGATATCAATGCGATTAAACTGGTAAAAGGCTACAGCC
GAGACCACCGTCCAGAGCTAAACCAAGTGGTCCTTGAGCTGATTTGTGAAAATCAAGCAGGCCTGCCTGTTTACATGCAAGCACTCAGTGGTAACACCAA
TGATGCGAAGGCGTTTTCTGAGGTCACTAAGAAGCATATTCACTGTTTAAAAGCGGCTCAAAATAGTCGCTATTTTATCGCCGATGCCGCCCTGTACACG
GAAGACAGCATTCGCTCTTTGGATGAACAAAAACAGAAATTCATTACTCGTGTGCCAATGACGATTAAGTCTGCCAAAGAAGCCTTGCTGGCGCTTAGAC
CTGAGCAGTTAACCCATATCGGTAACGGCTATTCAGGTTGCTGGATTGACGCTAACTATGGCGCAGTCACTCAAAAATGGTTGTTGGTTCATAGCGAGCA
AGCGACGAAGCGAGAAGAAATAACGTTCTACAAGAACTTAGATAAAAATGCTGCCAAAGAGCTGAAAGCCCTGGGCCAACTTATGAAAAAAGAGTTTGCT
TGTGCAATGGATGCCGAGCAGGCAATCGATGACTTTGCAAACCAATGTCACCTCATTGGCTTTGCACAAAAAACCATCATTAAAGAGGCTGTCTATGCGG
GTCGCGGTCGCCCTAAAAAGGGGGCTAAGCCAACGGGATACCGCTACTTTATTGATGCCACGCCTTATACCGATCTAGATAAAGTGAAACTGGCTAAGCT
TAAAGTGGGTATGTTTATCCTTGCTACCAACGATACTGACAGTACGGATCTGACCATGGCTGCATTGCTTGAACATTACAAATCCCAACAAAAAGTAGAG
CGCGGCTTTCGTTTTTTGAAAAGCCCNGAGTTTTTAACGTCTTCGATCTTCTTAAAAAAACCTCAACGCATTGAGGCTCTGCTCATGATAATGACGCTTA
GCCTTCTTGTTTACGCAAGTCTAGAGCACAAAATCAGAGAGCAACTTAACAAGACAGAAGCGTTCTTCCCAAGCATGGTGAAGAACAAAACAACGACTAA
ACCGACGGCACGTTGGGTATTCTTAAAATTTGAAGGGATCGACACACTCGAACTCGACGGTCAGAGCTTCATAACCGGTGTACGAGAGCATCAACGACGA
TTACTGAAATTGTTGGGCCAGTTATACGAAGCGGTTTATTCCTAAATTAGGTGCGGAAACTCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1614 bp | 537 aa | 132 | 1745 | + | No |
Chemistry : DDE
ORF sequence :
MPTPQPVIKRLDHLGLIAAFCREVGLPDIIDRIIPKYSEHKVSHGDAVLAMILNGLGFHSRTLHMFSDFFETKPVSKLLAKDIEAHHLTDDVLGRTLDAL
YEADVSALYQAIAEHVVDKLGLKADSVHLDITSFHVDGEYAQDDDINAIKLVKGYSRDHRPELNQVVLELICENQAGLPVYMQALSGNTNDAKAFSEVTK
KHIHCLKAAQNSRYFIADAALYTEDSIRSLDEQKQKFITRVPMTIKSAKEALLALRPEQLTHIGNGYSGCWIDANYGAVTQKWLLVHSEQATKREEITFY
KNLDKNAAKELKALGQLMKKEFACAMDAEQAIDDFANQCHLIGFAQKTIIKEAVYAGRGRPKKGAKPTGYRYFIDATPYTDLDKVKLAKLKVGMFILATN
DTDSTDLTMAALLEHYKSQQKVERGFRFLKSPEFLTSSIFLKKPQRIEALLMIMTLSLLVYASLEHKIREQLNKTEAFFPSMVKNKTTTKPTARWVFLKF
EGIDTLELDGQSFITGVREHQRRLLKLLGQLYEAVYS
YEADVSALYQAIAEHVVDKLGLKADSVHLDITSFHVDGEYAQDDDINAIKLVKGYSRDHRPELNQVVLELICENQAGLPVYMQALSGNTNDAKAFSEVTK
KHIHCLKAAQNSRYFIADAALYTEDSIRSLDEQKQKFITRVPMTIKSAKEALLALRPEQLTHIGNGYSGCWIDANYGAVTQKWLLVHSEQATKREEITFY
KNLDKNAAKELKALGQLMKKEFACAMDAEQAIDDFANQCHLIGFAQKTIIKEAVYAGRGRPKKGAKPTGYRYFIDATPYTDLDKVKLAKLKVGMFILATN
DTDSTDLTMAALLEHYKSQQKVERGFRFLKSPEFLTSSIFLKKPQRIEALLMIMTLSLLVYASLEHKIREQLNKTEAFFPSMVKNKTTTKPTARWVFLKF
EGIDTLELDGQSFITGVREHQRRLLKLLGQLYEAVYS
Blast result :
Comments
ISSaco1 is 91% aa (transposase) similar to ISSpu7.
References
1] Sarah Sonbol (2020) Direct submission.
2] Dikow,R.B. and Smith,W.L. (2013) Direct GenBank submission.
2] Dikow,R.B. and Smith,W.L. (2013) Direct GenBank submission.