ISSaco1

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ASAI01000065 ND Salinovibrio costicola
Salinovibrio costicola ATCC33508
DNA section
IS Length : 1764 bp

Ends


IR Length : 20/27

IRL : CCGTCATTCCGCAGCGAATTAATGAATTTAAATAGTGTGATCCAGCGATC
IRR : CCGAGTTTCCGCACCTAATTTAGGAATAAACCGCTTCGTATAACTGGCCC

Insertion site


Left flankDirect repeatRight flankDR Length
NAAAAGAGNACACAACTTCGACCNTAATATATGTAGAGATACTACGCCAAAATTATAACAGA0
TCATCATGGTTTATTCTCCCTAGTGATAATATAATCAACGTAATTGACCAATTCGACATTCA0
ACGACCAGCTACTGGAGCGATGGTTTTTACATGTAGAGATACTACGCCAAAATTATAACAGA0

DNA sequence

CCGTCATTCCGCAGCGAATTAATGAATTTAAATAGTGTGATCCAGCGATCATTTACAGCTTTTAGTGTCACAGATGTCTTGACCGTGATCCCTCGCTTTG
ATCTATTACTGCTATTTAACGGTCGCTTACTATGCCTACTCCTCAACCTGTCATCAAACGCCTCGATCATCTAGGGCTAATCGCTGCTTTCTGTCGTGAA
GTTGGCTTACCAGATATTATCGACCGTATCATTCCTAAGTACTCCGAGCACAAGGTTTCACATGGTGATGCCGTCTTAGCGATGATCCTAAATGGGCTGG
GTTTTCACAGTAGAACCCTGCATATGTTTTCCGACTTTTTCGAAACGAAGCCTGTTTCCAAATTGCTAGCCAAAGACATTGAAGCGCACCATTTAACGGA
TGATGTCCTTGGGCGCACGCTTGATGCTTTATATGAAGCGGATGTGTCCGCACTTTATCAAGCGATTGCTGAGCATGTTGTTGATAAACTGGGACTTAAA
GCGGACTCTGTCCATCTTGATATCACAAGCTTTCATGTTGATGGAGAATACGCCCAAGACGACGATATCAATGCGATTAAACTGGTAAAAGGCTACAGCC
GAGACCACCGTCCAGAGCTAAACCAAGTGGTCCTTGAGCTGATTTGTGAAAATCAAGCAGGCCTGCCTGTTTACATGCAAGCACTCAGTGGTAACACCAA
TGATGCGAAGGCGTTTTCTGAGGTCACTAAGAAGCATATTCACTGTTTAAAAGCGGCTCAAAATAGTCGCTATTTTATCGCCGATGCCGCCCTGTACACG
GAAGACAGCATTCGCTCTTTGGATGAACAAAAACAGAAATTCATTACTCGTGTGCCAATGACGATTAAGTCTGCCAAAGAAGCCTTGCTGGCGCTTAGAC
CTGAGCAGTTAACCCATATCGGTAACGGCTATTCAGGTTGCTGGATTGACGCTAACTATGGCGCAGTCACTCAAAAATGGTTGTTGGTTCATAGCGAGCA
AGCGACGAAGCGAGAAGAAATAACGTTCTACAAGAACTTAGATAAAAATGCTGCCAAAGAGCTGAAAGCCCTGGGCCAACTTATGAAAAAAGAGTTTGCT
TGTGCAATGGATGCCGAGCAGGCAATCGATGACTTTGCAAACCAATGTCACCTCATTGGCTTTGCACAAAAAACCATCATTAAAGAGGCTGTCTATGCGG
GTCGCGGTCGCCCTAAAAAGGGGGCTAAGCCAACGGGATACCGCTACTTTATTGATGCCACGCCTTATACCGATCTAGATAAAGTGAAACTGGCTAAGCT
TAAAGTGGGTATGTTTATCCTTGCTACCAACGATACTGACAGTACGGATCTGACCATGGCTGCATTGCTTGAACATTACAAATCCCAACAAAAAGTAGAG
CGCGGCTTTCGTTTTTTGAAAAGCCCNGAGTTTTTAACGTCTTCGATCTTCTTAAAAAAACCTCAACGCATTGAGGCTCTGCTCATGATAATGACGCTTA
GCCTTCTTGTTTACGCAAGTCTAGAGCACAAAATCAGAGAGCAACTTAACAAGACAGAAGCGTTCTTCCCAAGCATGGTGAAGAACAAAACAACGACTAA
ACCGACGGCACGTTGGGTATTCTTAAAATTTGAAGGGATCGACACACTCGAACTCGACGGTCAGAGCTTCATAACCGGTGTACGAGAGCATCAACGACGA
TTACTGAAATTGTTGGGCCAGTTATACGAAGCGGTTTATTCCTAAATTAGGTGCGGAAACTCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1614 bp537 aa1321745+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPTPQPVIKRLDHLGLIAAFCREVGLPDIIDRIIPKYSEHKVSHGDAVLAMILNGLGFHSRTLHMFSDFFETKPVSKLLAKDIEAHHLTDDVLGRTLDAL
YEADVSALYQAIAEHVVDKLGLKADSVHLDITSFHVDGEYAQDDDINAIKLVKGYSRDHRPELNQVVLELICENQAGLPVYMQALSGNTNDAKAFSEVTK
KHIHCLKAAQNSRYFIADAALYTEDSIRSLDEQKQKFITRVPMTIKSAKEALLALRPEQLTHIGNGYSGCWIDANYGAVTQKWLLVHSEQATKREEITFY
KNLDKNAAKELKALGQLMKKEFACAMDAEQAIDDFANQCHLIGFAQKTIIKEAVYAGRGRPKKGAKPTGYRYFIDATPYTDLDKVKLAKLKVGMFILATN
DTDSTDLTMAALLEHYKSQQKVERGFRFLKSPEFLTSSIFLKKPQRIEALLMIMTLSLLVYASLEHKIREQLNKTEAFFPSMVKNKTTTKPTARWVFLKF
EGIDTLELDGQSFITGVREHQRRLLKLLGQLYEAVYS

 

Blast result :
Comments
ISSaco1 is 91% aa (transposase) similar to ISSpu7.
References
1] Sarah Sonbol (2020) Direct submission.
2] Dikow,R.B. and Smith,W.L. (2013) Direct GenBank submission.