ISNarch6

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_CP050695.1 ND Natrialbaceae archaeon
Natrialbaceae archaeon 2447
Salinadaptatus halalkaliphilus 2447
DNA section
IS Length : 2314 bp

Ends


IR Length : 26/36

IRL : GTAACCGCTCCACGAACCCCATCTGTTGAGTCGATTCCGGTTCCGGGACA
IRR : GTAAGCGATCCGGGAACCCCAACTACTCAGCGGATTTGAGCGCGTATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCAATTGAACAATTGAACAATTGAACAG8

DNA sequence

GTAACCGCTCCACGAACCCCATCTGTTGAGTCGATTCCGGTTCCGGGACACTGAGCCTTCCAGATGGATGGGAGGCCTGGAGTATGTGGTTATCCCCGGT
ACGAGCCCGCTGGTTGGGCCATTTGTATCACGCCCACGCATTGGGTTTGTCACTGAGTGAGTATGCCCGGCGCCAGGATGTCTCGCTGGCCGAGCTGATG
GACTGGGAGCGCCGGCTGCATGAGGCTGGGGTTCCGGTTCCGGAGCGTCACCGTCCCGCACGGTTCGTCGCCGTGGAGGTGGTGGCATGATCCGGCCCGG
GAGCGATGTGGCGGTGTATCTGTGCCGCGAGCCCGTGGACATGCGCAAGTCCATCGACGGGCTCTCGCTGCTCGTCCAAGAAGTCATGGAGTGCGATCCG
TTCACCGCGGCGGTGTTCGTGTTCTGCAACCGGGCGCAGGATAAGGTGAAGATCCTGTTCTGGGAGTGCAACGGCTTCGTGGTCTGGTACAAGCGCCTCG
AGCAGGAGCGGTTCAAGTGGCCAGTGTGCGGTGAGCAGGAGCGTCTGACACTCTCCGGCCAGGAGCTCAACTGGCTGCTCGATGGCATCGACATTAGCCG
CATGCGACCACACAAAGCGCTGCGTTATCAGTCGGTTGGCTGACATTTTGGTCGTCTCTCTAGTGCCTTTTTGGTACAATTACCGGCATGAAACGGGCCG
ATACCAACACGTTGCCATCCAGTTCCGATCTCCAGCGCGAGCTCGACGAACAGCGCGCTCTGGTCGAACGCCTCCAGGCCCAACTCGCCGAGAAGGAGGC
CGCGTGGGCGGCAGAGAAGCGCTCGCTGTTCGAGCAAATCCGGCTGCTGCTGGACAACCGCTTCGGCCCCTCCACCGAGAAGTACAGCATCAAGCAGCAG
GACCTGTTCTTCGACGAGGCCGAGAGCCTGGTGGAAGAGCCCGCCGAGTCAGGTGAGACTGCCGAGGCGGAAGAGGAAAACCAGCCGGCCCCCAGTGGCG
GCAAGCGTCGCCGGGGTGGGCGCGCCCCACTGCCGCCGGAGCTGCCTCGCGTGGACATCGTCCACGATCTCCCCGAGGACGAACAGCAGTGCGCCTGCGG
CTGCGGTGCGCTCACCCGCATCGGCGAAGAGGTCACCGAGCAGCTCGACATCATCCCGGCCCAGATCCAGGTGCTGCGCCATGTGCGCATCAAGTACGCC
TGCCGGGCCTGCGAGGACGGTGTCCAGATCGCCGATCTGCCGCCGCAGCCGCTGCCGAAGAGCAACGCGAGCCCCGGACTGCTTGCCTATATCGCCACCG
CCAAGTACCAGGACGCGCTGCCGCTGTACCGCCAGGAGCAGGTCTTCAAACGACTGGGCCTGGAGCTGCCACGGAACACGCTCGCCCGCTGGATGGTGGA
GATGGGCACGTTGCTCGCCCCACTGGCCGAGCGCCTGCGCGCCCATCTGCAAGGCGCGGAACTCATCCACATGGACGAGACGACCGTGCAGGTGAACACC
GAGCCCGGGCGTGCTGCCTCCAGCACCTCGTACATGTGGGTCCAGCGCGGCGGACCACCCGGTGCCGAGGTGGTGCTGTTCGACTACGACCCCAGCCGCT
CGGGCCAGGTCCCGCGCCGCCTGCTGGATGACTACGACGGCATCCTGCTCACCGACGGTTACGAGGGCTATGCCCAGGTGGTGCGCGACAATGCGATCAC
TCACGCTGGCTGCTGGGCGCACGCCAGGCGGCAGTTCGTCGAGGCCCAGAAAGCCCAGCCCAAGGGCAAGACCGGGAAGGCGGACCGAGCGCTGGCGTCC
ATCGGCAAACTCTACCGCGTGGAACGCGAGGCGCAGGGCCTGCCCGTTGAGGAGCGTGAACGCCTGCGCGCCACGCACAGCCAGCCGCTGATCAAGGATC
TGCGCCAGTGGCTTGACCAGTCACTGGAGAAGGTGCCGCCGAAGACCGCCATCGGCAAAGCCGTGCACTACCTCAACAGCCAGTGGCCCCGGCTCATCCG
GTTCCTGGACGATGGGCGCATCCCGCTGGACAACAACCCCGCGGAGAACGCCATCCGGCCGTTCGTGGTGGGGCGCAAGAACTGGCTTTTTAGCCACACA
CAGCGGGGCGCCCACGCCAGCGCCACGATCTACAGCGTCATCGAGACGGCCAAGATCAACGGCCTGGAGCCCTACGCGTACCTGCTCGAGGTGTTAAAGA
ACCTGCCGGCGGCGACAACCGACGAGGCCATCACGGATCTGCTGCCGTGGAACCAGGATGAGAGCCTATACGCGCTCAAATCCGCTGAGTAGTTGGGGTT
CCCGGATCGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
207 bp68 aa84290+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MWLSPVRARWLGHLYHAHALGLSLSEYARRQDVSLAELMDWERRLHEAGVPVPERHRPARFVAVEVVA

 

Blast result :Comments : hypothetical protein
ORF 2
LengthBeginEndStrandFusion ORF
357 bp118 aa287643+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MIRPGSDVAVYLCREPVDMRKSIDGLSLLVQEVMECDPFTAAVFVFCNRAQDKVKILFWECNGFVVWYKRLEQERFKWPVCGEQERLTLSGQELNWLLDG
IDISRMRPHKALRYQSVG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1605 bp534 aa6882292+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRADTNTLPSSSDLQRELDEQRALVERLQAQLAEKEAAWAAEKRSLFEQIRLLLDNRFGPSTEKYSIKQQDLFFDEAESLVEEPAESGETAEAEEENQP
APSGGKRRRGGRAPLPPELPRVDIVHDLPEDEQQCACGCGALTRIGEEVTEQLDIIPAQIQVLRHVRIKYACRACEDGVQIADLPPQPLPKSNASPGLLA
YIATAKYQDALPLYRQEQVFKRLGLELPRNTLARWMVEMGTLLAPLAERLRAHLQGAELIHMDETTVQVNTEPGRAASSTSYMWVQRGGPPGAEVVLFDY
DPSRSGQVPRRLLDDYDGILLTDGYEGYAQVVRDNAITHAGCWAHARRQFVEAQKAQPKGKTGKADRALASIGKLYRVEREAQGLPVEERERLRATHSQP
LIKDLRQWLDQSLEKVPPKTAIGKAVHYLNSQWPRLIRFLDDGRIPLDNNPAENAIRPFVVGRKNWLFSHTQRGAHASATIYSVIETAKINGLEPYAYLL
EVLKNLPAATTDEAITDLLPWNQDESLYALKSAE

 

Blast result :
Comments
ISNarch6 is 98% aa (tranposase) similar to ISNarch2.
References
1] Sarah Sonbol (2020) Direct submission.
2] Xue,Q. (2020) Direct GenBank submission.