ISH28
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U42220, X59158 | Y | Halobacterium salinarum | Halobacterium sp. NRC-1 plasmid pNRC200 Halobacterium tunesiensis Halobacterium sp. NRC-1 plasmid pNRC100 Halobacterium salinarum PHH1 plasmid pHH1 |
DNA section
IS Length : 938 bp
Ends
IR Length : 16
IRL : GGCTCTGGTGAATCGCTGGACAGCGCCGGCTTCGACCGTCAGAACTAGTG
IRR : GGCTCTGGTGAATCGCCAGAAGGCGTTTGATTTCACGGTGTGACGGCCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCTATTTTG | GTATGGTT | GGAATCCGCG | 8 |
TAGTCCGTTC | GAAAGACCAG | 0 |
DNA sequence
GGCTCTGGTGAATCGCTGGACAGCGCCGGCTTCGACCGTCAGAACTAGTGGAATGAAGCGGGAAACCGCCGATGATCCATGTCGAAGATTTCCCGCTTCA
CGAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTCGGTGGCCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCGATTGTGTC
GCTGCACTGTCTGCGGGTGTACCTGGAGAAATCGTACCGGGAAACGCTTGATCTGCTGAGCGAGATGCCACACATACTGGCCGAGATCGGCCTCAACGAG
GCCGATCTCCCCGACCACTCGACGCTAGTGAAGGCGTTTGACAGACTCAAAACAGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CGAGCGGACACGCCGCCATCGACGCGACGTTCTTCGACCGCGAAACCGCCAGCAAGCACTACTGCCGTCGGACGAACTACCGCGTTCAGACGCTCAAAAC
CACCGCACTCGTCGATACAGAAACGCAGGCTATCCTCGACGTGCATTGCTCGACCGGGAAACCACACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGC
AACGCGGGCGACCTCGCCAGCCTCGCCGCTGACAAGGGCTACGATTGGATGGAACTCCGCAAGAAACTCAGGGAAGATGGCGTGAGACCGTTGATCAAGC
ATCGGATCTTCCGGCCCATCGACCACGCGCACAACGCGCGGGTCGATGGGCCTCGCTACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCGACGATCAA
GCGCACGCTCGGCGACGCCGTGCGTGCGCGAGCGTGGTTCCGCGAGTTTCGAGAAATCGTCTTGAAATGTGTCGTCCACAATATCAAGCGGGCCGTCACA
CCGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
CGAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTCGGTGGCCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCGATTGTGTC
GCTGCACTGTCTGCGGGTGTACCTGGAGAAATCGTACCGGGAAACGCTTGATCTGCTGAGCGAGATGCCACACATACTGGCCGAGATCGGCCTCAACGAG
GCCGATCTCCCCGACCACTCGACGCTAGTGAAGGCGTTTGACAGACTCAAAACAGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CGAGCGGACACGCCGCCATCGACGCGACGTTCTTCGACCGCGAAACCGCCAGCAAGCACTACTGCCGTCGGACGAACTACCGCGTTCAGACGCTCAAAAC
CACCGCACTCGTCGATACAGAAACGCAGGCTATCCTCGACGTGCATTGCTCGACCGGGAAACCACACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGC
AACGCGGGCGACCTCGCCAGCCTCGCCGCTGACAAGGGCTACGATTGGATGGAACTCCGCAAGAAACTCAGGGAAGATGGCGTGAGACCGTTGATCAAGC
ATCGGATCTTCCGGCCCATCGACCACGCGCACAACGCGCGGGTCGATGGGCCTCGCTACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCGACGATCAA
GCGCACGCTCGGCGACGCCGTGCGTGCGCGAGCGTGGTTCCGCGAGTTTCGAGAAATCGTCTTGAAATGTGTCGTCCACAATATCAAGCGGGCCGTCACA
CCGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
828 bp | 275 aa | 79 | 906 | + | No |
Chemistry : DDE
ORF sequence :
MSKISRFTKKAVQLAKNAVGGRGEVAAPEGGGGFADYAIVSLHCLRVYLEKSYRETLDLLSEMPHILAEIGLNEADLPDHSTLVKAFDRLKTALWRVLLR
LSAQLHDPSGHAAIDATFFDRETASKHYCRRTNYRVQTLKTTALVDTETQAILDVHCSTGKPHDTQLGWQVARRNAGDLASLAADKGYDWMELRKKLRED
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRAMCETVFSTIKRTLGDAVRARAWFREFREIVLKCVVHNIKRAVTP
LSAQLHDPSGHAAIDATFFDRETASKHYCRRTNYRVQTLKTTALVDTETQAILDVHCSTGKPHDTQLGWQVARRNAGDLASLAADKGYDWMELRKKLRED
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRAMCETVFSTIKRTLGDAVRARAWFREFREIVLKCVVHNIKRAVTP
Blast result :
Comments
ISH28 has been isolated through its inactivation of the bacteriorhodopsin (BR, bop) gene. ISH28 and ISH1 transposases are 42 % identical.
File updated: November 08 2010.
File updated: November 08 2010.
References
1] Pfeifer, F., Boyer, H.W., and Betlach, M.C. (1985) J. Bacteriol. 164, 414-420.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., Blaseio, U., and Horne, M. (1989) Can. J. Microbiol. 35, 96-100.
4] Pfeifer, F., and Ghahraman, P. (1991) Nucl. Acids Res. 19, 5788.
5] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.
6] Woods, W.G., and Dyall-Smith, (1996) Gene. 182 (1-2), 219-220
7] Woods, W.G., and Dyall-Smith Direct submission, GenBank
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., Blaseio, U., and Horne, M. (1989) Can. J. Microbiol. 35, 96-100.
4] Pfeifer, F., and Ghahraman, P. (1991) Nucl. Acids Res. 19, 5788.
5] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.
6] Woods, W.G., and Dyall-Smith, (1996) Gene. 182 (1-2), 219-220
7] Woods, W.G., and Dyall-Smith Direct submission, GenBank