ISH28

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
U42220, X59158 Y Halobacterium salinarum
Halobacterium sp. NRC-1 plasmid pNRC200
Halobacterium tunesiensis
Halobacterium sp. NRC-1 plasmid pNRC100
Halobacterium salinarum PHH1 plasmid pHH1
DNA section
IS Length : 938 bp

Ends


IR Length : 16

IRL : GGCTCTGGTGAATCGCTGGACAGCGCCGGCTTCGACCGTCAGAACTAGTG
IRR : GGCTCTGGTGAATCGCCAGAAGGCGTTTGATTTCACGGTGTGACGGCCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGCTATTTTGGTATGGTTGGAATCCGCG8
TAGTCCGTTCGAAAGACCAG0

DNA sequence

GGCTCTGGTGAATCGCTGGACAGCGCCGGCTTCGACCGTCAGAACTAGTGGAATGAAGCGGGAAACCGCCGATGATCCATGTCGAAGATTTCCCGCTTCA
CGAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTCGGTGGCCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCGATTGTGTC
GCTGCACTGTCTGCGGGTGTACCTGGAGAAATCGTACCGGGAAACGCTTGATCTGCTGAGCGAGATGCCACACATACTGGCCGAGATCGGCCTCAACGAG
GCCGATCTCCCCGACCACTCGACGCTAGTGAAGGCGTTTGACAGACTCAAAACAGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CGAGCGGACACGCCGCCATCGACGCGACGTTCTTCGACCGCGAAACCGCCAGCAAGCACTACTGCCGTCGGACGAACTACCGCGTTCAGACGCTCAAAAC
CACCGCACTCGTCGATACAGAAACGCAGGCTATCCTCGACGTGCATTGCTCGACCGGGAAACCACACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGC
AACGCGGGCGACCTCGCCAGCCTCGCCGCTGACAAGGGCTACGATTGGATGGAACTCCGCAAGAAACTCAGGGAAGATGGCGTGAGACCGTTGATCAAGC
ATCGGATCTTCCGGCCCATCGACCACGCGCACAACGCGCGGGTCGATGGGCCTCGCTACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCGACGATCAA
GCGCACGCTCGGCGACGCCGTGCGTGCGCGAGCGTGGTTCCGCGAGTTTCGAGAAATCGTCTTGAAATGTGTCGTCCACAATATCAAGCGGGCCGTCACA
CCGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
828 bp275 aa79906+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKISRFTKKAVQLAKNAVGGRGEVAAPEGGGGFADYAIVSLHCLRVYLEKSYRETLDLLSEMPHILAEIGLNEADLPDHSTLVKAFDRLKTALWRVLLR
LSAQLHDPSGHAAIDATFFDRETASKHYCRRTNYRVQTLKTTALVDTETQAILDVHCSTGKPHDTQLGWQVARRNAGDLASLAADKGYDWMELRKKLRED
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRAMCETVFSTIKRTLGDAVRARAWFREFREIVLKCVVHNIKRAVTP

 

Blast result :
Comments
ISH28 has been isolated through its inactivation of the bacteriorhodopsin (BR, bop) gene. ISH28 and ISH1 transposases are 42 % identical.
File updated: November 08 2010.
References
1] Pfeifer, F., Boyer, H.W., and Betlach, M.C. (1985) J. Bacteriol. 164, 414-420.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., Blaseio, U., and Horne, M. (1989) Can. J. Microbiol. 35, 96-100.
4] Pfeifer, F., and Ghahraman, P. (1991) Nucl. Acids Res. 19, 5788.
5] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.
6] Woods, W.G., and Dyall-Smith, (1996) Gene. 182 (1-2), 219-220
7] Woods, W.G., and Dyall-Smith Direct submission, GenBank