ISNhal1

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013960.1 ND Nitrosococcus halophilus
Nitrosococcus halophilus Nc4
DNA section
IS Length : 1276 bp

Ends


IR Length : 25/30

IRL : CACTACTGTCCCACTAAGAATTAACGAAAAAGGCCTGAAAACCAACTTGT
IRR : CACTACTGTCCCATAAACTTTCACGAAAACTGCAATGAAGCCTGAAGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCACATTTCAATATGTGCTGTAGTCGGAGCACAC9
ATTTTTAAGTTAATATCAAGTTATCAAGGTAAAT9
GCAAAATCACATAAAATTGGTATAAATAGAACGA9

DNA sequence

CACTACTGTCCCACTAAGAATTAACGAAAAAGGCCTGAAAACCAACTTGTTTTGATACAATGAAATCACGACAAATCATTGAAGAACAAGAAGGAGTTCA
GGCCTTGGCACATCATAATACTGTATTTTCTCAGTTACTGAAACTAGTCCCGAGACATGAATTCGAGGTGCTGGCAAATCAGCACCACGAGGGCCGGAAA
CTACGCAAGATGACCCGTTGGTCACAATTTGTTTCCATGGCACTGGCACAGCTGTCAGGGCGCACTAGTTTGCGTGATGTGGTCAGTAATCTATCGGCTC
AGGCCAGAAAACTCTACCTTTTAGGTGCCGTGCCGGTGAGCCGCTCCTCTCTAGCCCGGGTTAATGAGAAACAACCCTATGCACTGTACGAAGCGTTATT
CGCCAAACTGTTTTCCCGCTGTCAAGGGCTCGCGCCCCGTCATGGTTTCCGGTTCAAGAACAAGCTCTACTCACTTGATGCTTCTACTCTCGATCTGTGC
CTGAGCGTCTTTCCCTGGGCGAAGTTTCGAACCACCAAGGGGGCCGTCAAGCTCCATGTCGGTCTGGATCATGACGGGCTGCTCCCCGCATTGATGACCG
TCACTAACGGCAAAGTCCACGATATTACCGTGGCCCGTACTTTGGCATTACCCAAAGGCAGTATCGTGGTCTTCGATCGGGGCTATACCGATTATGATGG
GTATCATCAACTCAATACCCAGGGCATCTTTTTTGTCACGCGCCAACGTAAAAAGGCCCGCTATCGCGTGGTTGAACGCCGTAAAGTCGATAAATCCAAG
GGCCTGACGAGCGATCAGACCCTCGAACTGACCGGCGCCAAGGCCCGAAACTGCCCGATCGCTCTGCGCCGCATCGGCTTTAAGGATTTTGACACCGGTA
TCCGGTATTGCTTCCTGACCAACAATTTTCATCTTGCTGCCAGCACTATCGCGGCAATCTATAAGTCCCGATGGCAGATCGAACTGTTTTTCAAATGGAT
AAAGCAGAATTTAAAGATCAAGCGTTTCTTGGGAACCTCAAAAAACGCCGTCATGACCCAACTCTGGATCGCCCTTTGTGCCTATTTATTGCTCGCTTAT
CTCAAGTTCGTCAGCAAAATAGACTGCTCTCTTCAGCAGATTATTCGATTGCTCCAGCTCAATCTGTTTGAGCGGCGCGACCTTCAAGCATTGCTACGAG
GCGATCCGCCAGAACCAGAACTTCTACCTCTTCAGGCTTCATTGCAGTTTTCGTGAAAGTTTATGGGACAGTAGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1197 bp398 aa601256+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKSRQIIEEQEGVQALAHHNTVFSQLLKLVPRHEFEVLANQHHEGRKLRKMTRWSQFVSMALAQLSGRTSLRDVVSNLSAQARKLYLLGAVPVSRSSLAR
VNEKQPYALYEALFAKLFSRCQGLAPRHGFRFKNKLYSLDASTLDLCLSVFPWAKFRTTKGAVKLHVGLDHDGLLPALMTVTNGKVHDITVARTLALPKG
SIVVFDRGYTDYDGYHQLNTQGIFFVTRQRKKARYRVVERRKVDKSKGLTSDQTLELTGAKARNCPIALRRIGFKDFDTGIRYCFLTNNFHLAASTIAAI
YKSRWQIELFFKWIKQNLKIKRFLGTSKNAVMTQLWIALCAYLLLAYLKFVSKIDCSLQQIIRLLQLNLFERRDLQALLRGDPPEPELLPLQASLQFS

 

Blast result :
Comments
ISNhal1 is 72% aa similar to ISPca1.
References
1] Sarah Sonbol (2020) Direct submission .
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Campbell,M.A., Malfatti,S.A., Chain,P.S.G., Heidelberg,J.F., Ward,B.B. and Klotz,M.G. (2009) Direct GenBank submission.