ISNhal1
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013960.1 | ND | Nitrosococcus halophilus | Nitrosococcus halophilus Nc4 |
DNA section
IS Length : 1276 bp
Ends
IR Length : 25/30
IRL : CACTACTGTCCCACTAAGAATTAACGAAAAAGGCCTGAAAACCAACTTGT
IRR : CACTACTGTCCCATAAACTTTCACGAAAACTGCAATGAAGCCTGAAGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCACATTTCAAT | ATGTGCTGT | AGTCGGAGCACAC | 9 |
ATTTTTAAGTTA | ATATCAAGT | TATCAAGGTAAAT | 9 |
GCAAAATCACAT | AAAATTGGT | ATAAATAGAACGA | 9 |
DNA sequence
CACTACTGTCCCACTAAGAATTAACGAAAAAGGCCTGAAAACCAACTTGTTTTGATACAATGAAATCACGACAAATCATTGAAGAACAAGAAGGAGTTCA
GGCCTTGGCACATCATAATACTGTATTTTCTCAGTTACTGAAACTAGTCCCGAGACATGAATTCGAGGTGCTGGCAAATCAGCACCACGAGGGCCGGAAA
CTACGCAAGATGACCCGTTGGTCACAATTTGTTTCCATGGCACTGGCACAGCTGTCAGGGCGCACTAGTTTGCGTGATGTGGTCAGTAATCTATCGGCTC
AGGCCAGAAAACTCTACCTTTTAGGTGCCGTGCCGGTGAGCCGCTCCTCTCTAGCCCGGGTTAATGAGAAACAACCCTATGCACTGTACGAAGCGTTATT
CGCCAAACTGTTTTCCCGCTGTCAAGGGCTCGCGCCCCGTCATGGTTTCCGGTTCAAGAACAAGCTCTACTCACTTGATGCTTCTACTCTCGATCTGTGC
CTGAGCGTCTTTCCCTGGGCGAAGTTTCGAACCACCAAGGGGGCCGTCAAGCTCCATGTCGGTCTGGATCATGACGGGCTGCTCCCCGCATTGATGACCG
TCACTAACGGCAAAGTCCACGATATTACCGTGGCCCGTACTTTGGCATTACCCAAAGGCAGTATCGTGGTCTTCGATCGGGGCTATACCGATTATGATGG
GTATCATCAACTCAATACCCAGGGCATCTTTTTTGTCACGCGCCAACGTAAAAAGGCCCGCTATCGCGTGGTTGAACGCCGTAAAGTCGATAAATCCAAG
GGCCTGACGAGCGATCAGACCCTCGAACTGACCGGCGCCAAGGCCCGAAACTGCCCGATCGCTCTGCGCCGCATCGGCTTTAAGGATTTTGACACCGGTA
TCCGGTATTGCTTCCTGACCAACAATTTTCATCTTGCTGCCAGCACTATCGCGGCAATCTATAAGTCCCGATGGCAGATCGAACTGTTTTTCAAATGGAT
AAAGCAGAATTTAAAGATCAAGCGTTTCTTGGGAACCTCAAAAAACGCCGTCATGACCCAACTCTGGATCGCCCTTTGTGCCTATTTATTGCTCGCTTAT
CTCAAGTTCGTCAGCAAAATAGACTGCTCTCTTCAGCAGATTATTCGATTGCTCCAGCTCAATCTGTTTGAGCGGCGCGACCTTCAAGCATTGCTACGAG
GCGATCCGCCAGAACCAGAACTTCTACCTCTTCAGGCTTCATTGCAGTTTTCGTGAAAGTTTATGGGACAGTAGTG
GGCCTTGGCACATCATAATACTGTATTTTCTCAGTTACTGAAACTAGTCCCGAGACATGAATTCGAGGTGCTGGCAAATCAGCACCACGAGGGCCGGAAA
CTACGCAAGATGACCCGTTGGTCACAATTTGTTTCCATGGCACTGGCACAGCTGTCAGGGCGCACTAGTTTGCGTGATGTGGTCAGTAATCTATCGGCTC
AGGCCAGAAAACTCTACCTTTTAGGTGCCGTGCCGGTGAGCCGCTCCTCTCTAGCCCGGGTTAATGAGAAACAACCCTATGCACTGTACGAAGCGTTATT
CGCCAAACTGTTTTCCCGCTGTCAAGGGCTCGCGCCCCGTCATGGTTTCCGGTTCAAGAACAAGCTCTACTCACTTGATGCTTCTACTCTCGATCTGTGC
CTGAGCGTCTTTCCCTGGGCGAAGTTTCGAACCACCAAGGGGGCCGTCAAGCTCCATGTCGGTCTGGATCATGACGGGCTGCTCCCCGCATTGATGACCG
TCACTAACGGCAAAGTCCACGATATTACCGTGGCCCGTACTTTGGCATTACCCAAAGGCAGTATCGTGGTCTTCGATCGGGGCTATACCGATTATGATGG
GTATCATCAACTCAATACCCAGGGCATCTTTTTTGTCACGCGCCAACGTAAAAAGGCCCGCTATCGCGTGGTTGAACGCCGTAAAGTCGATAAATCCAAG
GGCCTGACGAGCGATCAGACCCTCGAACTGACCGGCGCCAAGGCCCGAAACTGCCCGATCGCTCTGCGCCGCATCGGCTTTAAGGATTTTGACACCGGTA
TCCGGTATTGCTTCCTGACCAACAATTTTCATCTTGCTGCCAGCACTATCGCGGCAATCTATAAGTCCCGATGGCAGATCGAACTGTTTTTCAAATGGAT
AAAGCAGAATTTAAAGATCAAGCGTTTCTTGGGAACCTCAAAAAACGCCGTCATGACCCAACTCTGGATCGCCCTTTGTGCCTATTTATTGCTCGCTTAT
CTCAAGTTCGTCAGCAAAATAGACTGCTCTCTTCAGCAGATTATTCGATTGCTCCAGCTCAATCTGTTTGAGCGGCGCGACCTTCAAGCATTGCTACGAG
GCGATCCGCCAGAACCAGAACTTCTACCTCTTCAGGCTTCATTGCAGTTTTCGTGAAAGTTTATGGGACAGTAGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1197 bp | 398 aa | 60 | 1256 | + | No |
Chemistry : DDE
ORF sequence :
MKSRQIIEEQEGVQALAHHNTVFSQLLKLVPRHEFEVLANQHHEGRKLRKMTRWSQFVSMALAQLSGRTSLRDVVSNLSAQARKLYLLGAVPVSRSSLAR
VNEKQPYALYEALFAKLFSRCQGLAPRHGFRFKNKLYSLDASTLDLCLSVFPWAKFRTTKGAVKLHVGLDHDGLLPALMTVTNGKVHDITVARTLALPKG
SIVVFDRGYTDYDGYHQLNTQGIFFVTRQRKKARYRVVERRKVDKSKGLTSDQTLELTGAKARNCPIALRRIGFKDFDTGIRYCFLTNNFHLAASTIAAI
YKSRWQIELFFKWIKQNLKIKRFLGTSKNAVMTQLWIALCAYLLLAYLKFVSKIDCSLQQIIRLLQLNLFERRDLQALLRGDPPEPELLPLQASLQFS
VNEKQPYALYEALFAKLFSRCQGLAPRHGFRFKNKLYSLDASTLDLCLSVFPWAKFRTTKGAVKLHVGLDHDGLLPALMTVTNGKVHDITVARTLALPKG
SIVVFDRGYTDYDGYHQLNTQGIFFVTRQRKKARYRVVERRKVDKSKGLTSDQTLELTGAKARNCPIALRRIGFKDFDTGIRYCFLTNNFHLAASTIAAI
YKSRWQIELFFKWIKQNLKIKRFLGTSKNAVMTQLWIALCAYLLLAYLKFVSKIDCSLQQIIRLLQLNLFERRDLQALLRGDPPEPELLPLQASLQFS
Blast result :
Comments
ISNhal1 is 72% aa similar to ISPca1.
References
1] Sarah Sonbol (2020) Direct submission .
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Campbell,M.A., Malfatti,S.A., Chain,P.S.G., Heidelberg,J.F., Ward,B.B. and Klotz,M.G. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Campbell,M.A., Malfatti,S.A., Chain,P.S.G., Heidelberg,J.F., Ward,B.B. and Klotz,M.G. (2009) Direct GenBank submission.