ISNarch2

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_CP050695.1 ND Natrialbaceae archaeon
Natrialbaceae archaeon XQ-INN 246 strain 2447
DNA section
IS Length : 2315 bp

Ends


IR Length : 22/24

IRL : GTAAGCGCTCCACGAACCCCATCTGTTGAGTCGATTCCAGTTCCGCGACA
IRR : GTAAGCGCTCCGCGAACCCCACCTACTCAGCGGGTTTGAGCGCGTATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGGAAGCCCTGAAGCCCTGAAGCCCTTG8
CCGTTCGTCGGTTCGTCGGTTCGTCGTC8
ATCTGATTTTGGCTTCGGTG0
AGCACCCGGCCACCCGGCCACCCGGCGG8

DNA sequence

GTAAGCGCTCCACGAACCCCATCTGTTGAGTCGATTCCAGTTCCGCGACACTGAGCCTTCCAGATTGATGGGAGGCTTGGAGCATGTGGTTATCCCCGGT
ACGCGCCCGCTGGCTGGGTCATTTGTATCACGCCCATGCCTTGGGGTTGTCGCTGAGTGAGTATGCGCGGCGCCAGGATGTCTCGCTCGCCGAGTTGATG
GACTGGGAGCGCCGGCTGCATGAGGCCGGAGTTCCGGTTCCGGAGCGTCACCGTCCCGCACGGTTCGTGGCCGTGGAGGTGGTGGCATGATCCGGCCCGG
GACGGATGTGGCGGTGTATCTGTGCCGCGAGCCCGTGGACATGCGCAAGTCGATTGACGGTTTGTCGCTGCTCGTCCAGGAGGTCATGGCGTGCGATCCG
TTCACCGCGGCGGTGTTCGTGTTCTGCAACCGGGCGCGGGATAAGGTGAAGATCCTGTTCTGGGAGCGCAACGGCTTTGTGGTCTGGTACAAACGCCTCG
AGCAGGAGCGGTTCAAGTGGCCGGCTTGCGGTGAGCGGGAGCGGCTCACGCTCTCGGGCCAGGAGCTCAACTGGTTGCTCGACGGCATCGACATCACCCG
TATGCAGCCGCACAAAGCGTTGCATTTTCAGTCGGTTGGATGAAATTTTTGCTCGCCGCACCGGTGGCGTTTTGGTACAATTACCCACATGAAACGGGCC
GATACCAACACGTTGCCATCCAGTTCCGATCTCCAGCGCGAGCTCGATGAGCAGCGCGCTCTGGTCGAACGCCTCCAGGCCCAACTCGCCGAGAAGGAGG
CCGCGTGGGCGGCAGAGAAGCGCTCGCTGTTCGAGCAAATCCGGCTGCTGCTGGACAACCGCTTCGGCCCCTCCACCGAGAAGTACAGCATCAAGCAGCA
GGACCTGTTCTTCGACGAGGCCGAGAGCCTGGTGGAAGAGCCCGCCGAGTCAGGTGAGACTGCCGAGGCGGAAGAGGAAAACCAGCCGGCCCCCAGTGGC
GGCAAGCGTCGCCGGGGTGGGCGCGCCCCACTGCCGCCGGAGCTGCCTCGCGTGGACATCGTCCACGATCTCCCCGAGGACGAACAGCAGTGTGCCTGCG
GCTGCGGTGCGCTCACCCGCATCGGCGAAGAGGTCACCGAGCAGCTCGACATCATCCCGGCCCAGATCCAGGTGCTGCGCCATGTGCGCATCAAGTACGC
CTGCCGGGCCTGCGAGGACGGTGTCCAGATCGCCGATCTGCCGCCGCAGCCGCTGCCGAAGAGCAACGCGAGCCCCGGACTGCTTGCCTATATCGCCACC
GCCAAGTACCAGGACGCGCTGCCGCTGTACCGCCAGGAGCAGGTCTTCAAACGACTGGGCCTGGAGCTGCCACGGAACACGCTCGCCCGCTGGATGGTGG
ACCTGGGTGCGTTGCTCGCGCCACTGGCCGAGCGCATGCGCGCCCATTTGCACAGTGCGGAGCTCATCCACATGGATGAGACCACCGTGCAGGTGAACAC
CGAGCCCGGGCGGGCCGCCTCCAGCACCTCGTACATGTGGGTCCAACGCGGCGGGCCGCCCGGAGCCGAGGTGGTGCTGTTCGACTACGATCCCAGCCGC
TCGGGCCAGGTCCCGCGGCGCCTGCTGGATGACTATGGTGGTATCCTGCTCACCGACGGCTACGAGGGCTATGCCCAGGTCGTGCGCGATAATGCCATCA
CCCATGCCGGGTGCTGGGCGCATGCGCGCCGCAAGTTCAAAGAGGCCCAGAAGGTCCAGCCCAAGGGCAAGACCGGCAAGGCCGACCGGGCGCTGGCGTC
CATCGGCAAGCTCTACCGGGTGGAGCGCGAAGCCCAGGGCCTGCCCGTTGAGAAGCGTGAACGCCTGCGCGCCACGCACAGCCGGCCGCTGATCGAGGAT
CTGCGCCAGTGGCTTGACCAGTCCCTGGAGAAGGTGCCGCCGAAGAGCGCCATCGGCAAGGCCGTGCACTACCTCAACAGCCAATGGCCCCGGCTCATCC
GCTTCCTGGAGGATGGCCGCATCCCGCTGGACAACAACCCCGCGGAGAACGCCATTCGGCCGTTCGTGGTGGGGCGCAAAAACTGGCTGTTCAGTCAGAC
GCCGCGGGGTGCGCACGCCAGTGCCACGATCTACAGCGTCATCGAGACGGCCAAGATCAACGGCCTGGAGCCCTACGCGTACCTGCTCGAGGTGTTAAAG
AACCTGCCGGGCGCGACAACCGGCGAGGCCATCGACCGACTGCTGCCGTGGCATCAGGACGAGAGCCTATACGCGCTCAAACCCGCTGAGTAGGTGGGGT
TCGCGGAGCGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
207 bp68 aa84290+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MWLSPVRARWLGHLYHAHALGLSLSEYARRQDVSLAELMDWERRLHEAGVPVPERHRPARFVAVEVVA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
357 bp118 aa287643+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MIRPGTDVAVYLCREPVDMRKSIDGLSLLVQEVMACDPFTAAVFVFCNRARDKVKILFWERNGFVVWYKRLEQERFKWPACGERERLTLSGQELNWLLDG
IDITRMQPHKALHFQSVG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1605 bp534 aa6892293+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRADTNTLPSSSDLQRELDEQRALVERLQAQLAEKEAAWAAEKRSLFEQIRLLLDNRFGPSTEKYSIKQQDLFFDEAESLVEEPAESGETAEAEEENQP
APSGGKRRRGGRAPLPPELPRVDIVHDLPEDEQQCACGCGALTRIGEEVTEQLDIIPAQIQVLRHVRIKYACRACEDGVQIADLPPQPLPKSNASPGLLA
YIATAKYQDALPLYRQEQVFKRLGLELPRNTLARWMVDLGALLAPLAERMRAHLHSAELIHMDETTVQVNTEPGRAASSTSYMWVQRGGPPGAEVVLFDY
DPSRSGQVPRRLLDDYGGILLTDGYEGYAQVVRDNAITHAGCWAHARRKFKEAQKVQPKGKTGKADRALASIGKLYRVEREAQGLPVEKRERLRATHSRP
LIEDLRQWLDQSLEKVPPKSAIGKAVHYLNSQWPRLIRFLEDGRIPLDNNPAENAIRPFVVGRKNWLFSQTPRGAHASATIYSVIETAKINGLEPYAYLL
EVLKNLPGATTGEAIDRLLPWHQDESLYALKPAE

 

Blast result :
Comments
ISNarch2 is 77% (transposase) aa similar to ISAeh1.
References
1] Sarah Sonbol (2020) Direct submission.
2] Xue,Q (202) Direct GenBank submission.