ISHame2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FSQY01000001.1 | ND | Halomonas meridiana | Halomonas meridiana strain ACAM 246 |
DNA section
IS Length : 1226 bp
Ends
IR Length : 13/18
IRL : GGAAACACTGCACAAATCCCGCCGTAGCTGCCGGATCGACACCGGCGGGG
IRR : GGAACCGCTGATCAATTCGGTTCTAAGCGGCTGAAGCGCTCAGAATGGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGGCGTTAA | TTAA | TTAAAGGCCT | 4 |
DNA sequence
GGAAACACTGCACAAATCCCGCCGTAGCTGCCGGATCGACACCGGCGGGGTAGAATCTGATCATCCCACCACCGTCTGACAGAGCCGTCCTATGAAGCAG
ATCTCGTTCGCCCAGGCAGAGCACCAGAACAAGAAGAAGGTCACCCGCCGCGAGCGGTTTCTGGCCCAGATGGAGTCGCTAGTGCCTTGGCAACGGTTGA
TCGATGCGTTGTCGCCATCCTACTTCCCAAACGCGGCGGGCAAGCGGGGCCGGCCGCCCATCGGCCTTGAGCGCATGCTGCGGATCTACTTCCTGCAACA
GTGGTATGCGCTTGCTGACGAGGCGCTCGAAGATGCCATCTACGACAGCCAGGCGATGCGCGACTTCGTGGGGATCGACCTGGCCATCGAGAGCGTGCCG
GATGCGACCACACTACTGCGCTTCCGCCATCTGCTGGAAAAGCATGCCCTGACGCAGCGGATCTTCGAGGAGATCAATGCTCACCTGGCCGAGAAGGGGC
TGTTTATGCGTGAGGGCACCATTGTCGACGCCACCATCGTCGCGGCCGCGCCCTCCACCAAGAACAAGGCCAAGCAGCGCGACCCCGAGATGAAACAGAC
CCGCAAGTGCAACCAATGGTACTTCGGCATGAAGGCTCACATTGGCGTCGACGCGGTGACCGGGCTGACGCATACCGTGGTTGCCACCTCGGCTAACGTG
GCAGATGTCACTATGGCAGACCACTTGGTGCGGGATGATGACAAGCGAGTCCACGCTGATGCCGGCTACATCGGTATGGGCAAGCGCCTGGGTGAAGAGA
AGGACGCGGAGGATTCCCGTTGCTGTATCGCGGCCAAACGGGGCGGCATCAAGAAGATGGAAGAGAGCCCGATGAAAGAACTGCTGCTGAAGATCGAGAG
AACCAAGGCCAGCATCCGCGCCAAGGTTGAGCATCCGTTCCACGTCATCAAGAACCTCTTCGGCTACCGCAAGGTGCGCTACAAGGGGCTGGCCAAGAAC
CAGGCGCAGCTATTCAGCCTGTTCGGGCTGGCCAACCTGGTGCTGGCGACGAGATGTGAAGGACGAGTTGACGGGGCCAGTGCGCCTTGAATCTGCCCTG
CCAGCCGAATAATCCGGCTGGCAGGGGAAATAGGCCATCTTTACTGGTCAGAAAGCGACCGCTGATGCGGTGAAAGTACCATTCTGAGCGCTTCAGCCGC
TTAGAACCGAATTGATCAGCGGTTCC
ATCTCGTTCGCCCAGGCAGAGCACCAGAACAAGAAGAAGGTCACCCGCCGCGAGCGGTTTCTGGCCCAGATGGAGTCGCTAGTGCCTTGGCAACGGTTGA
TCGATGCGTTGTCGCCATCCTACTTCCCAAACGCGGCGGGCAAGCGGGGCCGGCCGCCCATCGGCCTTGAGCGCATGCTGCGGATCTACTTCCTGCAACA
GTGGTATGCGCTTGCTGACGAGGCGCTCGAAGATGCCATCTACGACAGCCAGGCGATGCGCGACTTCGTGGGGATCGACCTGGCCATCGAGAGCGTGCCG
GATGCGACCACACTACTGCGCTTCCGCCATCTGCTGGAAAAGCATGCCCTGACGCAGCGGATCTTCGAGGAGATCAATGCTCACCTGGCCGAGAAGGGGC
TGTTTATGCGTGAGGGCACCATTGTCGACGCCACCATCGTCGCGGCCGCGCCCTCCACCAAGAACAAGGCCAAGCAGCGCGACCCCGAGATGAAACAGAC
CCGCAAGTGCAACCAATGGTACTTCGGCATGAAGGCTCACATTGGCGTCGACGCGGTGACCGGGCTGACGCATACCGTGGTTGCCACCTCGGCTAACGTG
GCAGATGTCACTATGGCAGACCACTTGGTGCGGGATGATGACAAGCGAGTCCACGCTGATGCCGGCTACATCGGTATGGGCAAGCGCCTGGGTGAAGAGA
AGGACGCGGAGGATTCCCGTTGCTGTATCGCGGCCAAACGGGGCGGCATCAAGAAGATGGAAGAGAGCCCGATGAAAGAACTGCTGCTGAAGATCGAGAG
AACCAAGGCCAGCATCCGCGCCAAGGTTGAGCATCCGTTCCACGTCATCAAGAACCTCTTCGGCTACCGCAAGGTGCGCTACAAGGGGCTGGCCAAGAAC
CAGGCGCAGCTATTCAGCCTGTTCGGGCTGGCCAACCTGGTGCTGGCGACGAGATGTGAAGGACGAGTTGACGGGGCCAGTGCGCCTTGAATCTGCCCTG
CCAGCCGAATAATCCGGCTGGCAGGGGAAATAGGCCATCTTTACTGGTCAGAAAGCGACCGCTGATGCGGTGAAAGTACCATTCTGAGCGCTTCAGCCGC
TTAGAACCGAATTGATCAGCGGTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 92 | 1090 | + | No |
Chemistry : DDE
ORF sequence :
MKQISFAQAEHQNKKKVTRRERFLAQMESLVPWQRLIDALSPSYFPNAAGKRGRPPIGLERMLRIYFLQQWYALADEALEDAIYDSQAMRDFVGIDLAIE
SVPDATTLLRFRHLLEKHALTQRIFEEINAHLAEKGLFMREGTIVDATIVAAAPSTKNKAKQRDPEMKQTRKCNQWYFGMKAHIGVDAVTGLTHTVVATS
ANVADVTMADHLVRDDDKRVHADAGYIGMGKRLGEEKDAEDSRCCIAAKRGGIKKMEESPMKELLLKIERTKASIRAKVEHPFHVIKNLFGYRKVRYKGL
AKNQAQLFSLFGLANLVLATRCEGRVDGASAP
SVPDATTLLRFRHLLEKHALTQRIFEEINAHLAEKGLFMREGTIVDATIVAAAPSTKNKAKQRDPEMKQTRKCNQWYFGMKAHIGVDAVTGLTHTVVATS
ANVADVTMADHLVRDDDKRVHADAGYIGMGKRLGEEKDAEDSRCCIAAKRGGIKKMEESPMKELLLKIERTKASIRAKVEHPFHVIKNLFGYRKVRYKGL
AKNQAQLFSLFGLANLVLATRCEGRVDGASAP
Blast result :
Comments
ISHame2 is 78% aa similar to IS1021.
References
1] Sarah Sonbol (2020) Direct submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.