ISHame2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FSQY01000001.1 ND Halomonas meridiana
Halomonas meridiana strain ACAM 246
DNA section
IS Length : 1226 bp

Ends


IR Length : 13/18

IRL : GGAAACACTGCACAAATCCCGCCGTAGCTGCCGGATCGACACCGGCGGGG
IRR : GGAACCGCTGATCAATTCGGTTCTAAGCGGCTGAAGCGCTCAGAATGGTA

Insertion site


Left flankDirect repeatRight flankDR Length
CGGGCGTTAATTAATTAAAGGCCT4

DNA sequence

GGAAACACTGCACAAATCCCGCCGTAGCTGCCGGATCGACACCGGCGGGGTAGAATCTGATCATCCCACCACCGTCTGACAGAGCCGTCCTATGAAGCAG
ATCTCGTTCGCCCAGGCAGAGCACCAGAACAAGAAGAAGGTCACCCGCCGCGAGCGGTTTCTGGCCCAGATGGAGTCGCTAGTGCCTTGGCAACGGTTGA
TCGATGCGTTGTCGCCATCCTACTTCCCAAACGCGGCGGGCAAGCGGGGCCGGCCGCCCATCGGCCTTGAGCGCATGCTGCGGATCTACTTCCTGCAACA
GTGGTATGCGCTTGCTGACGAGGCGCTCGAAGATGCCATCTACGACAGCCAGGCGATGCGCGACTTCGTGGGGATCGACCTGGCCATCGAGAGCGTGCCG
GATGCGACCACACTACTGCGCTTCCGCCATCTGCTGGAAAAGCATGCCCTGACGCAGCGGATCTTCGAGGAGATCAATGCTCACCTGGCCGAGAAGGGGC
TGTTTATGCGTGAGGGCACCATTGTCGACGCCACCATCGTCGCGGCCGCGCCCTCCACCAAGAACAAGGCCAAGCAGCGCGACCCCGAGATGAAACAGAC
CCGCAAGTGCAACCAATGGTACTTCGGCATGAAGGCTCACATTGGCGTCGACGCGGTGACCGGGCTGACGCATACCGTGGTTGCCACCTCGGCTAACGTG
GCAGATGTCACTATGGCAGACCACTTGGTGCGGGATGATGACAAGCGAGTCCACGCTGATGCCGGCTACATCGGTATGGGCAAGCGCCTGGGTGAAGAGA
AGGACGCGGAGGATTCCCGTTGCTGTATCGCGGCCAAACGGGGCGGCATCAAGAAGATGGAAGAGAGCCCGATGAAAGAACTGCTGCTGAAGATCGAGAG
AACCAAGGCCAGCATCCGCGCCAAGGTTGAGCATCCGTTCCACGTCATCAAGAACCTCTTCGGCTACCGCAAGGTGCGCTACAAGGGGCTGGCCAAGAAC
CAGGCGCAGCTATTCAGCCTGTTCGGGCTGGCCAACCTGGTGCTGGCGACGAGATGTGAAGGACGAGTTGACGGGGCCAGTGCGCCTTGAATCTGCCCTG
CCAGCCGAATAATCCGGCTGGCAGGGGAAATAGGCCATCTTTACTGGTCAGAAAGCGACCGCTGATGCGGTGAAAGTACCATTCTGAGCGCTTCAGCCGC
TTAGAACCGAATTGATCAGCGGTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa921090+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQISFAQAEHQNKKKVTRRERFLAQMESLVPWQRLIDALSPSYFPNAAGKRGRPPIGLERMLRIYFLQQWYALADEALEDAIYDSQAMRDFVGIDLAIE
SVPDATTLLRFRHLLEKHALTQRIFEEINAHLAEKGLFMREGTIVDATIVAAAPSTKNKAKQRDPEMKQTRKCNQWYFGMKAHIGVDAVTGLTHTVVATS
ANVADVTMADHLVRDDDKRVHADAGYIGMGKRLGEEKDAEDSRCCIAAKRGGIKKMEESPMKELLLKIERTKASIRAKVEHPFHVIKNLFGYRKVRYKGL
AKNQAQLFSLFGLANLVLATRCEGRVDGASAP

 

Blast result :
Comments
ISHame2 is 78% aa similar to IS1021.
References
1] Sarah Sonbol (2020) Direct submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.