ISHame1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FSQY01000001.1 ND Halomonas meridiana
Halomonas meridiana strain ACAM 246
DNA section
IS Length : 1383 bp

Ends


IR Length : 21/27

IRL : GAGTTAAGCTCAGTTCTTGTGTATGGAGGGCAGTAGAGAGGGTGGCGTAT
IRR : GAGTTATTGTCAAATTCTGTGTATGGCCGGTCAGGCGGCAGTCCTGTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCCAAATTCGCCAAATTCGCCAAATTCA9

DNA sequence

GAGTTAAGCTCAGTTCTTGTGTATGGAGGGCAGTAGAGAGGGTGGCGTATCCTGTTGATTGATCTCGCCAGATCACAACCAACATAGGACGGATACGCCA
TGAGCAATTCTACTCTCCAAGCCGTGACGCAGCCAGACACCGGCGCTACTGATCCGTTGCATGAACTGCTGCGCAAAGGGGCCCGAGACCTGATCGCCAA
GGCCGTGGAGGCGGAGTTGAGCACGTTTCTGGAGCAATATGCCGACAAGACGCTGGAAGACGGCCGCCGTGTCGTCGTCCGCAACGGCTACCTGCCGGAG
CGCACCGTGCAAACCGGTATCGGCGACGTCGAGATCAAGGTGCCCCGCGTCCGTGACCGCAGTGGCGACGGGGTGACCTTCAGCAGCGCGCTGTTGCCGC
CCTACCTGAAGCGGGCCCGCAGCATCGAGGAGCTGATCCCCTGGCTCTACCTGAAGGGAGTCTCTACCGGCGACTACCAGGAGGCCCTGTCGGCCCTGCT
GGGTGACCAGGCCAAGGGACTCTCGGCCAACACCGTGTCGCGTCTCAAGAAGCAGTGGGAGGACGAGCATACCGACTGGCAGAAGCGCGACCTGGCAGAC
CAGCGTTACGTCTACTGGTGGGCTGACGGCGTGTGCAGCAACGTGCGCATGGATGACCGTCTGTGTCTGCTGGTGATCATCGGCGTCACTGAGCAGGGCC
GCAAGGAGTTGGTCGTCGTCGAGGATGGGCAGCGTGAGTCAGAGGCCAGCTGGAAAGAGCTGCTCACGGGGCTACGCGAGCGCGGGCTGACGACGGCCCC
CAAGCTAGCGGTTGGCGACGGCGCCATGGGCTTCTGGGCGGCGTTGAGCAAGGTCTATCCAGAGACCGAGCACCAGCGCTGCTGGGTCCACAAGACTGCC
AACGTATTGAATAAACTGCCGAAATCCGTGCAGCCCAAGGTCAAGGCCGACCTCCATGAGATCTGGATGGCCGAGACCCGCGATGAGGCGCACAAGGCTT
TCGATCGCACGGTGAAACGCTTCGAGGCCAAGTACCCCAGAGCCATGGAGTGCCTGGCCAAGGATCGGGAGGAGCTGCTGGCGTTCTATGACTACCCGGC
AGAACACTGGGTGCATATCCGCACCACCAACCCGATCGAGTCGACCTTCGCCACGGTCCGCCTGCGGAGCAAGCGCAGCCGGAACTGCGGCTCCAGAGCG
ACGACCCTGGCGATGGTCTTCAAGCTGCTTCAGAGCGCCCAGAAGCGCTGGAAGCGGATCAAGGGGTTCAACAAGCTGGAGCTGGTCGTGAACAACGTCC
AGTTCAAGGACGGCGAACCCTTGACCGATCAGTCAGACAGGACTGCCGCCTGACCGGCCATACACAGAATTTGACAATAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa1001353+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNSTLQAVTQPDTGATDPLHELLRKGARDLIAKAVEAELSTFLEQYADKTLEDGRRVVVRNGYLPERTVQTGIGDVEIKVPRVRDRSGDGVTFSSALLP
PYLKRARSIEELIPWLYLKGVSTGDYQEALSALLGDQAKGLSANTVSRLKKQWEDEHTDWQKRDLADQRYVYWWADGVCSNVRMDDRLCLLVIIGVTEQG
RKELVVVEDGQRESEASWKELLTGLRERGLTTAPKLAVGDGAMGFWAALSKVYPETEHQRCWVHKTANVLNKLPKSVQPKVKADLHEIWMAETRDEAHKA
FDRTVKRFEAKYPRAMECLAKDREELLAFYDYPAEHWVHIRTTNPIESTFATVRLRSKRSRNCGSRATTLAMVFKLLQSAQKRWKRIKGFNKLELVVNNV
QFKDGEPLTDQSDRTAA

 

Blast result :
Comments
ISHame1 is 88% aa similar to ISTdr1.
References
1] Sarah Sonbol (2020) Direct submission.
2@ Varghese,N. and Submissions,S. (2016) Direct GenBank submission.