ISHame1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FSQY01000001.1 | ND | Halomonas meridiana | Halomonas meridiana strain ACAM 246 |
DNA section
IS Length : 1383 bp
Ends
IR Length : 21/27
IRL : GAGTTAAGCTCAGTTCTTGTGTATGGAGGGCAGTAGAGAGGGTGGCGTAT
IRR : GAGTTATTGTCAAATTCTGTGTATGGCCGGTCAGGCGGCAGTCCTGTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCCAAATTC | GCCAAATTC | GCCAAATTCA | 9 |
DNA sequence
GAGTTAAGCTCAGTTCTTGTGTATGGAGGGCAGTAGAGAGGGTGGCGTATCCTGTTGATTGATCTCGCCAGATCACAACCAACATAGGACGGATACGCCA
TGAGCAATTCTACTCTCCAAGCCGTGACGCAGCCAGACACCGGCGCTACTGATCCGTTGCATGAACTGCTGCGCAAAGGGGCCCGAGACCTGATCGCCAA
GGCCGTGGAGGCGGAGTTGAGCACGTTTCTGGAGCAATATGCCGACAAGACGCTGGAAGACGGCCGCCGTGTCGTCGTCCGCAACGGCTACCTGCCGGAG
CGCACCGTGCAAACCGGTATCGGCGACGTCGAGATCAAGGTGCCCCGCGTCCGTGACCGCAGTGGCGACGGGGTGACCTTCAGCAGCGCGCTGTTGCCGC
CCTACCTGAAGCGGGCCCGCAGCATCGAGGAGCTGATCCCCTGGCTCTACCTGAAGGGAGTCTCTACCGGCGACTACCAGGAGGCCCTGTCGGCCCTGCT
GGGTGACCAGGCCAAGGGACTCTCGGCCAACACCGTGTCGCGTCTCAAGAAGCAGTGGGAGGACGAGCATACCGACTGGCAGAAGCGCGACCTGGCAGAC
CAGCGTTACGTCTACTGGTGGGCTGACGGCGTGTGCAGCAACGTGCGCATGGATGACCGTCTGTGTCTGCTGGTGATCATCGGCGTCACTGAGCAGGGCC
GCAAGGAGTTGGTCGTCGTCGAGGATGGGCAGCGTGAGTCAGAGGCCAGCTGGAAAGAGCTGCTCACGGGGCTACGCGAGCGCGGGCTGACGACGGCCCC
CAAGCTAGCGGTTGGCGACGGCGCCATGGGCTTCTGGGCGGCGTTGAGCAAGGTCTATCCAGAGACCGAGCACCAGCGCTGCTGGGTCCACAAGACTGCC
AACGTATTGAATAAACTGCCGAAATCCGTGCAGCCCAAGGTCAAGGCCGACCTCCATGAGATCTGGATGGCCGAGACCCGCGATGAGGCGCACAAGGCTT
TCGATCGCACGGTGAAACGCTTCGAGGCCAAGTACCCCAGAGCCATGGAGTGCCTGGCCAAGGATCGGGAGGAGCTGCTGGCGTTCTATGACTACCCGGC
AGAACACTGGGTGCATATCCGCACCACCAACCCGATCGAGTCGACCTTCGCCACGGTCCGCCTGCGGAGCAAGCGCAGCCGGAACTGCGGCTCCAGAGCG
ACGACCCTGGCGATGGTCTTCAAGCTGCTTCAGAGCGCCCAGAAGCGCTGGAAGCGGATCAAGGGGTTCAACAAGCTGGAGCTGGTCGTGAACAACGTCC
AGTTCAAGGACGGCGAACCCTTGACCGATCAGTCAGACAGGACTGCCGCCTGACCGGCCATACACAGAATTTGACAATAACTC
TGAGCAATTCTACTCTCCAAGCCGTGACGCAGCCAGACACCGGCGCTACTGATCCGTTGCATGAACTGCTGCGCAAAGGGGCCCGAGACCTGATCGCCAA
GGCCGTGGAGGCGGAGTTGAGCACGTTTCTGGAGCAATATGCCGACAAGACGCTGGAAGACGGCCGCCGTGTCGTCGTCCGCAACGGCTACCTGCCGGAG
CGCACCGTGCAAACCGGTATCGGCGACGTCGAGATCAAGGTGCCCCGCGTCCGTGACCGCAGTGGCGACGGGGTGACCTTCAGCAGCGCGCTGTTGCCGC
CCTACCTGAAGCGGGCCCGCAGCATCGAGGAGCTGATCCCCTGGCTCTACCTGAAGGGAGTCTCTACCGGCGACTACCAGGAGGCCCTGTCGGCCCTGCT
GGGTGACCAGGCCAAGGGACTCTCGGCCAACACCGTGTCGCGTCTCAAGAAGCAGTGGGAGGACGAGCATACCGACTGGCAGAAGCGCGACCTGGCAGAC
CAGCGTTACGTCTACTGGTGGGCTGACGGCGTGTGCAGCAACGTGCGCATGGATGACCGTCTGTGTCTGCTGGTGATCATCGGCGTCACTGAGCAGGGCC
GCAAGGAGTTGGTCGTCGTCGAGGATGGGCAGCGTGAGTCAGAGGCCAGCTGGAAAGAGCTGCTCACGGGGCTACGCGAGCGCGGGCTGACGACGGCCCC
CAAGCTAGCGGTTGGCGACGGCGCCATGGGCTTCTGGGCGGCGTTGAGCAAGGTCTATCCAGAGACCGAGCACCAGCGCTGCTGGGTCCACAAGACTGCC
AACGTATTGAATAAACTGCCGAAATCCGTGCAGCCCAAGGTCAAGGCCGACCTCCATGAGATCTGGATGGCCGAGACCCGCGATGAGGCGCACAAGGCTT
TCGATCGCACGGTGAAACGCTTCGAGGCCAAGTACCCCAGAGCCATGGAGTGCCTGGCCAAGGATCGGGAGGAGCTGCTGGCGTTCTATGACTACCCGGC
AGAACACTGGGTGCATATCCGCACCACCAACCCGATCGAGTCGACCTTCGCCACGGTCCGCCTGCGGAGCAAGCGCAGCCGGAACTGCGGCTCCAGAGCG
ACGACCCTGGCGATGGTCTTCAAGCTGCTTCAGAGCGCCCAGAAGCGCTGGAAGCGGATCAAGGGGTTCAACAAGCTGGAGCTGGTCGTGAACAACGTCC
AGTTCAAGGACGGCGAACCCTTGACCGATCAGTCAGACAGGACTGCCGCCTGACCGGCCATACACAGAATTTGACAATAACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 100 | 1353 | + | No |
Chemistry : DDE
ORF sequence :
MSNSTLQAVTQPDTGATDPLHELLRKGARDLIAKAVEAELSTFLEQYADKTLEDGRRVVVRNGYLPERTVQTGIGDVEIKVPRVRDRSGDGVTFSSALLP
PYLKRARSIEELIPWLYLKGVSTGDYQEALSALLGDQAKGLSANTVSRLKKQWEDEHTDWQKRDLADQRYVYWWADGVCSNVRMDDRLCLLVIIGVTEQG
RKELVVVEDGQRESEASWKELLTGLRERGLTTAPKLAVGDGAMGFWAALSKVYPETEHQRCWVHKTANVLNKLPKSVQPKVKADLHEIWMAETRDEAHKA
FDRTVKRFEAKYPRAMECLAKDREELLAFYDYPAEHWVHIRTTNPIESTFATVRLRSKRSRNCGSRATTLAMVFKLLQSAQKRWKRIKGFNKLELVVNNV
QFKDGEPLTDQSDRTAA
PYLKRARSIEELIPWLYLKGVSTGDYQEALSALLGDQAKGLSANTVSRLKKQWEDEHTDWQKRDLADQRYVYWWADGVCSNVRMDDRLCLLVIIGVTEQG
RKELVVVEDGQRESEASWKELLTGLRERGLTTAPKLAVGDGAMGFWAALSKVYPETEHQRCWVHKTANVLNKLPKSVQPKVKADLHEIWMAETRDEAHKA
FDRTVKRFEAKYPRAMECLAKDREELLAFYDYPAEHWVHIRTTNPIESTFATVRLRSKRSRNCGSRATTLAMVFKLLQSAQKRWKRIKGFNKLELVVNNV
QFKDGEPLTDQSDRTAA
Blast result :
Comments
ISHame1 is 88% aa similar to ISTdr1.
References
1] Sarah Sonbol (2020) Direct submission.
2@ Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2@ Varghese,N. and Submissions,S. (2016) Direct GenBank submission.