ISH27-3
- Family ISH3
- Group
Isoform ISH27-2Synonym(s) ISH61
Accession number | Transposition | Origin | Host |
---|---|---|---|
X54434 | Y | Halobacterium salinarum | Halobacterium salinarum Halobacterium sp. SB3 Halobacterium salinarum R1 |
DNA section
IS Length : 1389 bp
Ends
IR Length : 16
IRL : CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCGTCCTCAGTTGAGTCAGTCTGAGGTCTGATTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNTGATTG | AGACT | GTCGGCNNNN | 5 |
NNNNTGAGAT | ATTCT | TGGTTANNNN | 5 |
GCGCCCGCTT | AGTTT | GGGGACCTCC | 5 |
CTCACAAAGC | ATTCT | CGGCTAGCTG | 5 |
DNA sequence
CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTGTCTACGACCCAGCAAGCAGACAGTGAGATTCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTGCCTTGACGAGGAAGTTTCTCTCAACCTCGCCAACAACGCTGAAATCGGTGCAGAGGACATCTACGAGGTCCTCGTCGGCGCGACC
GCCGACGGGACCTCGATCTCGACGCTGTGCAACTCCAGTGAAGACTCGCCATCGGCGAACACAGTTCTCTATCATCTACGGACGAAGTTCGAGCCCGAAC
GGCTCGAACGAGTCGCTAACACGCTTCTTCGCCGAGACATCGTCGAACTGCTTCCCGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCGGAAGCCAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGCTACCGACTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCTGAGTTCCTTGGTGTACTCGACGGCCTTGACACCGAGG
TCAAGGCCGTCTACCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGCTTCAGGCGCACAACTACGCCTACGTGGTCCCAATCATTCAGTGGGG
TGAGGCGATTCAGCAGGAACTCTCGGAAGGATGGAGTCGCATTATTCAACACAACCTGACAGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGATATGACGAGAACGGTGTAGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGAGACGCCACGCG
AAGCGCGATACCACTACAGCAAACGCTTCGGTATCGAATCGAGCTATCGCTTGTCCGAGCAAGCGATAGCGACGACAACGACACGAGACGCGACGGTGAG
ACTGCTGTACGTCGTAGTGAGTCTGCTGCTACAGAATGTTTGGCGGTATCTCCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGACGGGCTGCGTGGACGGCCCTTGCGGTGCGTCGGGCCGTCCCCGCGAACCGACCACCTGACGACC
GATTCCACCGCTAACCACTGACCGGGACAGCCCCCGCACTGAGTGGCGACGCTGTCCGGTCGGCGGCTAAGCGCCGCCGACAGCGACAGCTTCCCGTCGA
TCTGTGAGGAGATCGCGGTCGGTCACTGCACTCCGCAACAGAAATCAGACCTCAGACTGACTCAACTGAGGACGCTTTGTGAGGTACTG
CTTCCTCGTCAACTGCCTTGACGAGGAAGTTTCTCTCAACCTCGCCAACAACGCTGAAATCGGTGCAGAGGACATCTACGAGGTCCTCGTCGGCGCGACC
GCCGACGGGACCTCGATCTCGACGCTGTGCAACTCCAGTGAAGACTCGCCATCGGCGAACACAGTTCTCTATCATCTACGGACGAAGTTCGAGCCCGAAC
GGCTCGAACGAGTCGCTAACACGCTTCTTCGCCGAGACATCGTCGAACTGCTTCCCGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCGGAAGCCAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGCTACCGACTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCTGAGTTCCTTGGTGTACTCGACGGCCTTGACACCGAGG
TCAAGGCCGTCTACCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGCTTCAGGCGCACAACTACGCCTACGTGGTCCCAATCATTCAGTGGGG
TGAGGCGATTCAGCAGGAACTCTCGGAAGGATGGAGTCGCATTATTCAACACAACCTGACAGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGATATGACGAGAACGGTGTAGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGAGACGCCACGCG
AAGCGCGATACCACTACAGCAAACGCTTCGGTATCGAATCGAGCTATCGCTTGTCCGAGCAAGCGATAGCGACGACAACGACACGAGACGCGACGGTGAG
ACTGCTGTACGTCGTAGTGAGTCTGCTGCTACAGAATGTTTGGCGGTATCTCCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGACGGGCTGCGTGGACGGCCCTTGCGGTGCGTCGGGCCGTCCCCGCGAACCGACCACCTGACGACC
GATTCCACCGCTAACCACTGACCGGGACAGCCCCCGCACTGAGTGGCGACGCTGTCCGGTCGGCGGCTAAGCGCCGCCGACAGCGACAGCTTCCCGTCGA
TCTGTGAGGAGATCGCGGTCGGTCACTGCACTCCGCAACAGAAATCAGACCTCAGACTGACTCAACTGAGGACGCTTTGTGAGGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 48 | 1214 | + | No |
Chemistry : DDE
ORF sequence :
MSTTQQADSEIHEDQLLNFLVNCLDEEVSLNLANNAEIGAEDIYEVLVGATADGTSISTLCNSSEDSPSANTVLYHLRTKFEPERLERVANTLLRRDIVE
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYRLAVRRLEDGDTASSVLAEFLGVLDGLDTEVKAVYLDRGFYDSKCL
TLLQAHNYAYVVPIIQWGEAIQQELSEGWSRIIQHNLTGKLDGHSWTVEFPVYIDCTYLNGRYDENGVARHGYAADAPFIETPREARYHYSKRFGIESSY
RLSEQAIATTTTRDATVRLLYVVVSLLLQNVWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPANRPPDDRFHR
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYRLAVRRLEDGDTASSVLAEFLGVLDGLDTEVKAVYLDRGFYDSKCL
TLLQAHNYAYVVPIIQWGEAIQQELSEGWSRIIQHNLTGKLDGHSWTVEFPVYIDCTYLNGRYDENGVARHGYAADAPFIETPREARYHYSKRFGIESSY
RLSEQAIATTTTRDATVRLLYVVVSLLLQNVWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPANRPPDDRFHR
Blast result :
Comments
References
1] Pfeifer, F., Boyer, H.W., and Betlach, M.C. (1985) J. Bacteriol. 164, 414-420.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., and Blaseio, U. (1989) J. Bacteriol. 171, 5135-5140.
4] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925.
5] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91, 335-346
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., and Blaseio, U. (1989) J. Bacteriol. 171, 5135-5140.
4] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925.
5] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91, 335-346