ISH27-3

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform ISH27-2Synonym(s) ISH61
Accession numberTranspositionOriginHost
X54434 Y Halobacterium salinarum
Halobacterium salinarum
Halobacterium sp. SB3
Halobacterium salinarum R1
DNA section
IS Length : 1389 bp

Ends


IR Length : 16

IRL : CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCGTCCTCAGTTGAGTCAGTCTGAGGTCTGATTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNTGATTGAGACTGTCGGCNNNN5
NNNNTGAGATATTCTTGGTTANNNN5
GCGCCCGCTTAGTTTGGGGACCTCC5
CTCACAAAGCATTCTCGGCTAGCTG5

DNA sequence

CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTGTCTACGACCCAGCAAGCAGACAGTGAGATTCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTGCCTTGACGAGGAAGTTTCTCTCAACCTCGCCAACAACGCTGAAATCGGTGCAGAGGACATCTACGAGGTCCTCGTCGGCGCGACC
GCCGACGGGACCTCGATCTCGACGCTGTGCAACTCCAGTGAAGACTCGCCATCGGCGAACACAGTTCTCTATCATCTACGGACGAAGTTCGAGCCCGAAC
GGCTCGAACGAGTCGCTAACACGCTTCTTCGCCGAGACATCGTCGAACTGCTTCCCGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCGGAAGCCAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGCTACCGACTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCTGAGTTCCTTGGTGTACTCGACGGCCTTGACACCGAGG
TCAAGGCCGTCTACCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGCTTCAGGCGCACAACTACGCCTACGTGGTCCCAATCATTCAGTGGGG
TGAGGCGATTCAGCAGGAACTCTCGGAAGGATGGAGTCGCATTATTCAACACAACCTGACAGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGATATGACGAGAACGGTGTAGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGAGACGCCACGCG
AAGCGCGATACCACTACAGCAAACGCTTCGGTATCGAATCGAGCTATCGCTTGTCCGAGCAAGCGATAGCGACGACAACGACACGAGACGCGACGGTGAG
ACTGCTGTACGTCGTAGTGAGTCTGCTGCTACAGAATGTTTGGCGGTATCTCCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGACGGGCTGCGTGGACGGCCCTTGCGGTGCGTCGGGCCGTCCCCGCGAACCGACCACCTGACGACC
GATTCCACCGCTAACCACTGACCGGGACAGCCCCCGCACTGAGTGGCGACGCTGTCCGGTCGGCGGCTAAGCGCCGCCGACAGCGACAGCTTCCCGTCGA
TCTGTGAGGAGATCGCGGTCGGTCACTGCACTCCGCAACAGAAATCAGACCTCAGACTGACTCAACTGAGGACGCTTTGTGAGGTACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa481214+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTTQQADSEIHEDQLLNFLVNCLDEEVSLNLANNAEIGAEDIYEVLVGATADGTSISTLCNSSEDSPSANTVLYHLRTKFEPERLERVANTLLRRDIVE
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYRLAVRRLEDGDTASSVLAEFLGVLDGLDTEVKAVYLDRGFYDSKCL
TLLQAHNYAYVVPIIQWGEAIQQELSEGWSRIIQHNLTGKLDGHSWTVEFPVYIDCTYLNGRYDENGVARHGYAADAPFIETPREARYHYSKRFGIESSY
RLSEQAIATTTTRDATVRLLYVVVSLLLQNVWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPANRPPDDRFHR

 

Blast result :
Comments
References
1] Pfeifer, F., Boyer, H.W., and Betlach, M.C. (1985) J. Bacteriol. 164, 414-420.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., and Blaseio, U. (1989) J. Bacteriol. 171, 5135-5140.
4] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925.
5] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91, 335-346