ISPvu1
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP047346 | ND | Proteus vulgaris | Proteus vulgaris ZN3 plasmid pZN3-cfr-121kb |
DNA section
IS Length : 2492 bp
Ends
IR Length : 24/26
IRL : GTAAGCGCCCTTAAATCAGCATCTTTTAACCCAGCCTATACAGCTTCACA
IRR : GTAAGCGCCCTTAAATCAGCACCCTTGCAAAACGATTACTCAGCCTAACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTAAGCGCCCTTAAATCA | GTTGCAAC | TGATTTAAGGGCGCTTAC | 8 |
DNA sequence
GTAAGCGCCCTTAAATCAGCATCTTTTAACCCAGCCTATACAGCTTCACACTAATACCTGTCTTTTTGAAAGGGGTATTGGTGATGACTTTACAGGAACG
CCAGCAGTTCTGGCAGCAACACATTGGTGCCTGGCAAGCATCTGATTCATCCGGTGCGGCTTTTTGCAAGCAGCATGATTTGAATTACGCGCAGTTTAAT
TATTGGCGTAAAAAGCTCCAGGTAAATGAGGTTGTTGAAAAACCTGCAGGCTTTGCTCAAGTGACACAGTTAGCTGCTTCGCACAACCGCCTTCATGATG
AGCTGGGCGTTCATTTACCCAGTGGCATAAGCTTTTCAGGGGTCAATGCAGGCAATTTGGATCTCGTCTTGGCACTGCTGAGGCAGCTGTAGTGAAAGTG
CGCTATTTGCGGCCAGCCAAACAGATGCCAGAAATTTATCTGTACCGTGCGCCGGTGGATTTTAGGAAACAAACCAACGGTTTAGCGTTGCTGGTGGAAC
AAGAGCTGGGCCACAATCCGTTCAGCGGTGCGCTGTATGCCTTCACCAATCGCCAGCGCAACAAAATCAAATGCGTGATGTGGGAAGACAACGGTTTCGT
CATGTATTACAAAGCGCTGGCCGAAGAGAAATTTAAGTGGCCCAAGCCTGCTGACGAGTTGCTGGCCTTAACAGGTGAGCAAATAAACTGGCTGTTAGAT
GGCTATGATATTAGTCTATTTAAGGGCCATAAAAAACTACAATACGACAGTCTTGGATAGCTTGATTTTATTGGGTTTTATCTGCTTTTACGGCTGTCTT
TCAGAGTCGTTTTTGCTATAATTTGGGTATGAAGAAACAGCCTAAACTCCCCATTAAAACATCTGATTTAAGCAGTCTAAGTGCTGCTGAATTACGTTTG
ATGGTGGCTCAATTTCAAGCGGTTGTAGAAGAACAAAATGCCAGTTTGTTAGAGCATAAAAGCGAGCTCAAAGCAGCCCATCGTCGTATCGAACTACTGG
AAGAAATGAACCGCCTGCTGAAAACGCAGAAGTTCAGTGCCAGCAGCGAAAAATCCAAGTTCCAGTTAAACCTCTTTGATGAAACTGAGCTTGAGGCTCA
GCTTGATGAGCTGTTCGATACCTTGCCTGAAGCGTCTGATGAAAACGCAGAGCTGACTCAAGCACGTAAAGCTCGCCAAACACGTCAGCGTGGTTTCTCT
GCAAATCTAGTACGTGAGCGCATCGAGCACACGCTAACTGAGTTAGAAAAAACCGGTGCCGACACAACCTTCTTCACCAAAGTAAAAGAAGAGCTACATT
ACATTCCGGCACAGCTGAAAGTGTTGGAGCATTGGCAAGAAAAAGCCGTTTTCACCTCCAAAGAAAGCATGCCAGAAGAACAGATGATTGCGGCGCAGCG
CCCAGTACATCCTTTTGGTAAGTGCTCGGTGACCACTTCGCTGATTGCGCACGTAATTGTAGATAAATATCTGTATGGCATGCCGTTGTATCGCCAAGAA
GGCAAGTTTAAAAACTTAGGCCACTTGATTCAGCGCAATAACATGGCGCAATGGTGCATGTGCTTTGCTGATGCAGCTAAACCTCTGCTACAGTTGATGC
GCGAGGTGCAAAACAGCGGCAGCTATCTGCAAGCTGATGAAACCCGTCTGCAAGTGCTGAAAGAAGACGGAGAAACAGCACAGTCAGATAAATGGATGTG
GGTGATCCGCGGCGGGCCGCCTAGCCAGCTTAGCGTACTCTTTGAATACGATCCTTCGCGTGCAGGCAGTGTGGCTGTGCGCCTGCTCGATGATTTTAAG
GGTGTGCTGCAAGCCGATGGTTTTTCTGGCTATAGCGCAGTCTGCAAAGCCAACTCGATTACGCGCATTGGCTGCTGGGATCATGCTCGGCGTAAGTTTG
TTGAAGCCGATAAAAGCGCTGATTCTAAAGCTAAAGCCAAGCAAGGCACAGTGAGTAAAGCTGATGTAGCGCTGGGCTATATCCGTAAACTCTATCGCGT
AGAAAGCAACATCGCGGACAAAACCGACGAAGAGCGTTTAAAGGCGCGCCAAGAAATCAGCGTGCCGGTACTGAATGAGTTTAAGCTGTGGCTTGAGAAA
AACGCTGCAAAAATCATGAAAGGCGGCGCTCTGAGAAAAGCCATCGACTACACCTTAAATCAATGGGAATACCTGATTGGCTATTGTGAGCGCGGCGACC
TGATGATCAGCAATATCATGGCCGAAAACGCCATTCGTCCCTTCGCTATTGGCCGTAAAAATTGGCTATTCGCCGACACACGCAAAGGCGCCGAAGCCAG
CGCCGCATGTTACTCATTAATCGAAACCGCCAAAGCCAACAACCTGGATCCGCAAGCCTACATTAAACATATTCTTGACCATGTTGCGACTGCTGACACC
CTCGAGAAACTCGAAGCGCTACTGCCCTGGAATGTGAAACTGGGTTAGGCTGAGTAATCGTTTTGCAAGGGTGCTGATTTAAGGGCGCTTAC
CCAGCAGTTCTGGCAGCAACACATTGGTGCCTGGCAAGCATCTGATTCATCCGGTGCGGCTTTTTGCAAGCAGCATGATTTGAATTACGCGCAGTTTAAT
TATTGGCGTAAAAAGCTCCAGGTAAATGAGGTTGTTGAAAAACCTGCAGGCTTTGCTCAAGTGACACAGTTAGCTGCTTCGCACAACCGCCTTCATGATG
AGCTGGGCGTTCATTTACCCAGTGGCATAAGCTTTTCAGGGGTCAATGCAGGCAATTTGGATCTCGTCTTGGCACTGCTGAGGCAGCTGTAGTGAAAGTG
CGCTATTTGCGGCCAGCCAAACAGATGCCAGAAATTTATCTGTACCGTGCGCCGGTGGATTTTAGGAAACAAACCAACGGTTTAGCGTTGCTGGTGGAAC
AAGAGCTGGGCCACAATCCGTTCAGCGGTGCGCTGTATGCCTTCACCAATCGCCAGCGCAACAAAATCAAATGCGTGATGTGGGAAGACAACGGTTTCGT
CATGTATTACAAAGCGCTGGCCGAAGAGAAATTTAAGTGGCCCAAGCCTGCTGACGAGTTGCTGGCCTTAACAGGTGAGCAAATAAACTGGCTGTTAGAT
GGCTATGATATTAGTCTATTTAAGGGCCATAAAAAACTACAATACGACAGTCTTGGATAGCTTGATTTTATTGGGTTTTATCTGCTTTTACGGCTGTCTT
TCAGAGTCGTTTTTGCTATAATTTGGGTATGAAGAAACAGCCTAAACTCCCCATTAAAACATCTGATTTAAGCAGTCTAAGTGCTGCTGAATTACGTTTG
ATGGTGGCTCAATTTCAAGCGGTTGTAGAAGAACAAAATGCCAGTTTGTTAGAGCATAAAAGCGAGCTCAAAGCAGCCCATCGTCGTATCGAACTACTGG
AAGAAATGAACCGCCTGCTGAAAACGCAGAAGTTCAGTGCCAGCAGCGAAAAATCCAAGTTCCAGTTAAACCTCTTTGATGAAACTGAGCTTGAGGCTCA
GCTTGATGAGCTGTTCGATACCTTGCCTGAAGCGTCTGATGAAAACGCAGAGCTGACTCAAGCACGTAAAGCTCGCCAAACACGTCAGCGTGGTTTCTCT
GCAAATCTAGTACGTGAGCGCATCGAGCACACGCTAACTGAGTTAGAAAAAACCGGTGCCGACACAACCTTCTTCACCAAAGTAAAAGAAGAGCTACATT
ACATTCCGGCACAGCTGAAAGTGTTGGAGCATTGGCAAGAAAAAGCCGTTTTCACCTCCAAAGAAAGCATGCCAGAAGAACAGATGATTGCGGCGCAGCG
CCCAGTACATCCTTTTGGTAAGTGCTCGGTGACCACTTCGCTGATTGCGCACGTAATTGTAGATAAATATCTGTATGGCATGCCGTTGTATCGCCAAGAA
GGCAAGTTTAAAAACTTAGGCCACTTGATTCAGCGCAATAACATGGCGCAATGGTGCATGTGCTTTGCTGATGCAGCTAAACCTCTGCTACAGTTGATGC
GCGAGGTGCAAAACAGCGGCAGCTATCTGCAAGCTGATGAAACCCGTCTGCAAGTGCTGAAAGAAGACGGAGAAACAGCACAGTCAGATAAATGGATGTG
GGTGATCCGCGGCGGGCCGCCTAGCCAGCTTAGCGTACTCTTTGAATACGATCCTTCGCGTGCAGGCAGTGTGGCTGTGCGCCTGCTCGATGATTTTAAG
GGTGTGCTGCAAGCCGATGGTTTTTCTGGCTATAGCGCAGTCTGCAAAGCCAACTCGATTACGCGCATTGGCTGCTGGGATCATGCTCGGCGTAAGTTTG
TTGAAGCCGATAAAAGCGCTGATTCTAAAGCTAAAGCCAAGCAAGGCACAGTGAGTAAAGCTGATGTAGCGCTGGGCTATATCCGTAAACTCTATCGCGT
AGAAAGCAACATCGCGGACAAAACCGACGAAGAGCGTTTAAAGGCGCGCCAAGAAATCAGCGTGCCGGTACTGAATGAGTTTAAGCTGTGGCTTGAGAAA
AACGCTGCAAAAATCATGAAAGGCGGCGCTCTGAGAAAAGCCATCGACTACACCTTAAATCAATGGGAATACCTGATTGGCTATTGTGAGCGCGGCGACC
TGATGATCAGCAATATCATGGCCGAAAACGCCATTCGTCCCTTCGCTATTGGCCGTAAAAATTGGCTATTCGCCGACACACGCAAAGGCGCCGAAGCCAG
CGCCGCATGTTACTCATTAATCGAAACCGCCAAAGCCAACAACCTGGATCCGCAAGCCTACATTAAACATATTCTTGACCATGTTGCGACTGCTGACACC
CTCGAGAAACTCGAAGCGCTACTGCCCTGGAATGTGAAACTGGGTTAGGCTGAGTAATCGTTTTGCAAGGGTGCTGATTTAAGGGCGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
309 bp | 102 aa | 84 | 392 | + | No |
AG : IS66 TnpA
ORF sequence :
MTLQERQQFWQQHIGAWQASDSSGAAFCKQHDLNYAQFNYWRKKLQVNEVVEKPAGFAQVTQLAASHNRLHDELGVHLPSGISFSGVNAGNLDLVLALLR
QL
QL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
369 bp | 122 aa | 392 | 760 | + | No |
AG : IS66 TnpB
ORF sequence :
MKVRYLRPAKQMPEIYLYRAPVDFRKQTNGLALLVEQELGHNPFSGALYAFTNRQRNKIKCVMWEDNGFVMYYKALAEEKFKWPKPADELLALTGEQINW
LLDGYDISLFKGHKKLQYDSLG
LLDGYDISLFKGHKKLQYDSLG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1620 bp | 539 aa | 829 | 2448 | + | No |
Chemistry : DDE
ORF sequence :
MKKQPKLPIKTSDLSSLSAAELRLMVAQFQAVVEEQNASLLEHKSELKAAHRRIELLEEMNRLLKTQKFSASSEKSKFQLNLFDETELEAQLDELFDTLP
EASDENAELTQARKARQTRQRGFSANLVRERIEHTLTELEKTGADTTFFTKVKEELHYIPAQLKVLEHWQEKAVFTSKESMPEEQMIAAQRPVHPFGKCS
VTTSLIAHVIVDKYLYGMPLYRQEGKFKNLGHLIQRNNMAQWCMCFADAAKPLLQLMREVQNSGSYLQADETRLQVLKEDGETAQSDKWMWVIRGGPPSQ
LSVLFEYDPSRAGSVAVRLLDDFKGVLQADGFSGYSAVCKANSITRIGCWDHARRKFVEADKSADSKAKAKQGTVSKADVALGYIRKLYRVESNIADKTD
EERLKARQEISVPVLNEFKLWLEKNAAKIMKGGALRKAIDYTLNQWEYLIGYCERGDLMISNIMAENAIRPFAIGRKNWLFADTRKGAEASAACYSLIET
AKANNLDPQAYIKHILDHVATADTLEKLEALLPWNVKLG
EASDENAELTQARKARQTRQRGFSANLVRERIEHTLTELEKTGADTTFFTKVKEELHYIPAQLKVLEHWQEKAVFTSKESMPEEQMIAAQRPVHPFGKCS
VTTSLIAHVIVDKYLYGMPLYRQEGKFKNLGHLIQRNNMAQWCMCFADAAKPLLQLMREVQNSGSYLQADETRLQVLKEDGETAQSDKWMWVIRGGPPSQ
LSVLFEYDPSRAGSVAVRLLDDFKGVLQADGFSGYSAVCKANSITRIGCWDHARRKFVEADKSADSKAKAKQGTVSKADVALGYIRKLYRVESNIADKTD
EERLKARQEISVPVLNEFKLWLEKNAAKIMKGGALRKAIDYTLNQWEYLIGYCERGDLMISNIMAENAIRPFAIGRKNWLFADTRKGAEASAACYSLIET
AKANNLDPQAYIKHILDHVATADTLEKLEALLPWNVKLG
Blast result :
Comments
ISPvu1 is 73% aa (transposase) similar to ISAeme5.
References
1] Dongsheng Zhou (2020) Direct submission.