ISHgi16

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 729 bp

Ends


IR Length : 15/16

IRL : GGCACCGTCTAGTTAAGGGATGAACAGATAGAGCTAGTGATTCATGCTAC
IRR : GGCACTGTCTAGTTAACCTCCTGAGCTGGCGGTCGTCCGTTGAGCGATTG

Insertion site


Left flankDirect repeatRight flankDR Length
AATACAAAACGGACCATATGAGTATT2

DNA sequence

GGCACCGTCTAGTTAAGGGATGAACAGATAGAGCTAGTGATTCATGCTACTCTCAGACCTGCTCAGGGACAGTTTAGACACCGCTACGCTTGAATGTTGG
CAGCGGGAACGGACGGCGAAGCCCGTCAGGGCGTTCGCCGTCCGGCTCCATGCTGCCGGTCTTTCACTCAGAGAGAAAGAAGCGATTCTTCGGCTGCTAG
GCGTAGAACGCTCGTTTCAAGCAGTCTTTCAGTGGGTACATCGACTGTCTGACAGCGTTTCAGACCCGCCGAAGGCAACGCCGAGGCGGGTCGCAGTCGG
CGAGACCGCTGTCAAAATTAACGGTGAGTGGTCTTGGTTGTACGCTGCAATAGATCTCGATACAAAAGTGATTCTTGACGTCGTGCTGTTCAAGCGTCAT
GGAACCAATCCGGCGGCTGCATTTCTCCACGGAGTCTGTGAGACACACGACTGTTCAGAGACGGTGTTTCTGGCTGATTCCTTCGGGTATCGGACTGCAT
TCTCTCGATTCAGGCTAAACGGTCGGGTCGATCACACAGACCGAAACCTGATTGAGAAATGGTTTCAGACGTTCAAAGTAAGAGTTGATCGTTTCCACAA
TTCATGGGTGGGCAGTCGGCTGAGCGTCCGCCGATGGCTTGCAGTGTTTGTTCATTACTATAACTTTCAGCGACCGCATCAATCGCTCAACGGACGACCG
CCAGCTCAGGAGGTTAACTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
678 bp225 aa44721+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLLSDLLRDSLDTATLECWQRERTAKPVRAFAVRLHAAGLSLREKEAILRLLGVERSFQAVFQWVHRLSDSVSDPPKATPRRVAVGETAVKINGEWSWLY
AAIDLDTKVILDVVLFKRHGTNPAAAFLHGVCETHDCSETVFLADSFGYRTAFSRFRLNGRVDHTDRNLIEKWFQTFKVRVDRFHNSWVGSRLSVRRWLA
VFVHYYNFQRPHQSLNGRPPAQEVN

 

Blast result :
Comments
ISHgi16 is 90% aa similar to ISHme1.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)