ISHgi16
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 729 bp
Ends
IR Length : 15/16
IRL : GGCACCGTCTAGTTAAGGGATGAACAGATAGAGCTAGTGATTCATGCTAC
IRR : GGCACTGTCTAGTTAACCTCCTGAGCTGGCGGTCGTCCGTTGAGCGATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATACAAAACGG | AC | CATATGAGTATT | 2 |
DNA sequence
GGCACCGTCTAGTTAAGGGATGAACAGATAGAGCTAGTGATTCATGCTACTCTCAGACCTGCTCAGGGACAGTTTAGACACCGCTACGCTTGAATGTTGG
CAGCGGGAACGGACGGCGAAGCCCGTCAGGGCGTTCGCCGTCCGGCTCCATGCTGCCGGTCTTTCACTCAGAGAGAAAGAAGCGATTCTTCGGCTGCTAG
GCGTAGAACGCTCGTTTCAAGCAGTCTTTCAGTGGGTACATCGACTGTCTGACAGCGTTTCAGACCCGCCGAAGGCAACGCCGAGGCGGGTCGCAGTCGG
CGAGACCGCTGTCAAAATTAACGGTGAGTGGTCTTGGTTGTACGCTGCAATAGATCTCGATACAAAAGTGATTCTTGACGTCGTGCTGTTCAAGCGTCAT
GGAACCAATCCGGCGGCTGCATTTCTCCACGGAGTCTGTGAGACACACGACTGTTCAGAGACGGTGTTTCTGGCTGATTCCTTCGGGTATCGGACTGCAT
TCTCTCGATTCAGGCTAAACGGTCGGGTCGATCACACAGACCGAAACCTGATTGAGAAATGGTTTCAGACGTTCAAAGTAAGAGTTGATCGTTTCCACAA
TTCATGGGTGGGCAGTCGGCTGAGCGTCCGCCGATGGCTTGCAGTGTTTGTTCATTACTATAACTTTCAGCGACCGCATCAATCGCTCAACGGACGACCG
CCAGCTCAGGAGGTTAACTAGACAGTGCC
CAGCGGGAACGGACGGCGAAGCCCGTCAGGGCGTTCGCCGTCCGGCTCCATGCTGCCGGTCTTTCACTCAGAGAGAAAGAAGCGATTCTTCGGCTGCTAG
GCGTAGAACGCTCGTTTCAAGCAGTCTTTCAGTGGGTACATCGACTGTCTGACAGCGTTTCAGACCCGCCGAAGGCAACGCCGAGGCGGGTCGCAGTCGG
CGAGACCGCTGTCAAAATTAACGGTGAGTGGTCTTGGTTGTACGCTGCAATAGATCTCGATACAAAAGTGATTCTTGACGTCGTGCTGTTCAAGCGTCAT
GGAACCAATCCGGCGGCTGCATTTCTCCACGGAGTCTGTGAGACACACGACTGTTCAGAGACGGTGTTTCTGGCTGATTCCTTCGGGTATCGGACTGCAT
TCTCTCGATTCAGGCTAAACGGTCGGGTCGATCACACAGACCGAAACCTGATTGAGAAATGGTTTCAGACGTTCAAAGTAAGAGTTGATCGTTTCCACAA
TTCATGGGTGGGCAGTCGGCTGAGCGTCCGCCGATGGCTTGCAGTGTTTGTTCATTACTATAACTTTCAGCGACCGCATCAATCGCTCAACGGACGACCG
CCAGCTCAGGAGGTTAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
678 bp | 225 aa | 44 | 721 | + | No |
Chemistry : DDE
ORF sequence :
MLLSDLLRDSLDTATLECWQRERTAKPVRAFAVRLHAAGLSLREKEAILRLLGVERSFQAVFQWVHRLSDSVSDPPKATPRRVAVGETAVKINGEWSWLY
AAIDLDTKVILDVVLFKRHGTNPAAAFLHGVCETHDCSETVFLADSFGYRTAFSRFRLNGRVDHTDRNLIEKWFQTFKVRVDRFHNSWVGSRLSVRRWLA
VFVHYYNFQRPHQSLNGRPPAQEVN
AAIDLDTKVILDVVLFKRHGTNPAAAFLHGVCETHDCSETVFLADSFGYRTAFSRFRLNGRVDHTDRNLIEKWFQTFKVRVDRFHNSWVGSRLSVRRWLA
VFVHYYNFQRPHQSLNGRPPAQEVN
Blast result :
Comments
ISHgi16 is 90% aa similar to ISHme1.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)