ISHgi14
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 1395 bp
Ends
Left end : ATAGATGCAAGGAGGAAGCCCACGGCTTTAGCCGTGGGAGGAATCCGACAATCCTCGAATCAAACCACGAGCGATAGCTGTCTGACTCCCCACGCCAGCC II struct. : Yes
Right end : GGGATGGTGAACGGGAATGGCGATTACACCGCCTACTCCAATTCGGAGGTAGACCGGGAGTCCACGGACAAGCCCACGACTTCAGTCGTGGGTCGATGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTGATTGCGGAC | TCAC | TCCATCCTCTCG | TGAC |
DNA sequence
ATAGATGCAAGGAGGAAGCCCACGGCTTTAGCCGTGGGAGGAATCCGACAATCCTCGAATCAAACCACGAGCGATAGCTGTCTGACTCCCCACGCCAGCC
GTGTGACTTATAAAACACAACTTCGTATGTGAAGTTACAGATGGAGGTCAAACGAACCATCCCGGTCAAACTCTCGGTTCCCGAAGACCGACAGGACGAC
CTCCATCAGACCATCGAACAGTTCAACCACGCCTGCAACTACACCGTCCAACACGGTCGCAATGACGACGGCTATCTCATCCTCAACAAGTCCACCATAC
ATGGCAAAGTGTACCACGACTTGCGAGACGAGACAGACCTACCCGCAAACCTCTGTGTTCGAGCCTACTCGAAAGCCGTCGAAGCGATGAAAAGCACCGT
CGCTGACTGGAAGAAGGGCAACAGCCGACCCCTTCCGAGATTCAACGAACCGTCCGCAGTGTACGACAAACGGACGTTGACCATCAAGGACAGGTCGGCC
ACCCTTTCGACCATCAACGGTAGGGTCGCCGTGGACTATGTTCTCGGAGACTACCAGAAGTCCTACCTCGATGATGACGACTACGAGAAGCGGATGGGAA
CGCTCCACTACCGCGAAGACGAGGGTGTGTTCTATCTTCACATCGTCATCAAGAAAGACGTTAGAGAACGAGACAGTGACAAGGTTCTGGGCGTGGATTT
GAACCTGAAGAACGTCGCCGTAACGAGTACAGGATCGTTCTACGATGGTGGCGAACTACTGTGGGGGCAGAACCACTACTTCCGCGTGCGTCGAAGCCTT
CAGCACAAAGGCACTCGCTCCGCAAAGCAGGTACTCCGGCGACTGTCGGGGCGAGAAAACCGCTTCGTGCTGAACCGCCTGCACACTATTTCTCGACGTA
TCGGGGAGGAGGCAGACTCCCACGGCTGTTCGTACATCGCCGTCGAACGCTTAACCCACATCCGCAAACGGATGAGTAATCGGAACGACCAAGTGAAGCG
TCAGATGCACAACTGGGCGTTCCGCGAACTTCAGGAAATGCTCGCGTACAAAGCCGCAGAGTACGGGATTCGCGTAGAGCAGATACCGCCTGCGTTTACG
AGTCAGACCTGCTCGAAGTGTGGGCATCAGTCCAGTACGAACCGTAACTCGGATGGGTGGTTCGAGTGCAACGACTGTGGGTACTCGGTTGACGGCGATT
ACAACGCCTCGAAGAACATCGGCTTCAAATTACTAACTTTACCGTCGGGCAAACGTCCCGATGGGTTGGGCGACGGTCATCTCGCCCTCAAGTCTGGGAT
GGTGAACGGGAATGGCGATTACACCGCCTACTCCAATTCGGAGGTAGACCGGGAGTCCACGGACAAGCCCACGACTTCAGTCGTGGGTCGATGAC
GTGTGACTTATAAAACACAACTTCGTATGTGAAGTTACAGATGGAGGTCAAACGAACCATCCCGGTCAAACTCTCGGTTCCCGAAGACCGACAGGACGAC
CTCCATCAGACCATCGAACAGTTCAACCACGCCTGCAACTACACCGTCCAACACGGTCGCAATGACGACGGCTATCTCATCCTCAACAAGTCCACCATAC
ATGGCAAAGTGTACCACGACTTGCGAGACGAGACAGACCTACCCGCAAACCTCTGTGTTCGAGCCTACTCGAAAGCCGTCGAAGCGATGAAAAGCACCGT
CGCTGACTGGAAGAAGGGCAACAGCCGACCCCTTCCGAGATTCAACGAACCGTCCGCAGTGTACGACAAACGGACGTTGACCATCAAGGACAGGTCGGCC
ACCCTTTCGACCATCAACGGTAGGGTCGCCGTGGACTATGTTCTCGGAGACTACCAGAAGTCCTACCTCGATGATGACGACTACGAGAAGCGGATGGGAA
CGCTCCACTACCGCGAAGACGAGGGTGTGTTCTATCTTCACATCGTCATCAAGAAAGACGTTAGAGAACGAGACAGTGACAAGGTTCTGGGCGTGGATTT
GAACCTGAAGAACGTCGCCGTAACGAGTACAGGATCGTTCTACGATGGTGGCGAACTACTGTGGGGGCAGAACCACTACTTCCGCGTGCGTCGAAGCCTT
CAGCACAAAGGCACTCGCTCCGCAAAGCAGGTACTCCGGCGACTGTCGGGGCGAGAAAACCGCTTCGTGCTGAACCGCCTGCACACTATTTCTCGACGTA
TCGGGGAGGAGGCAGACTCCCACGGCTGTTCGTACATCGCCGTCGAACGCTTAACCCACATCCGCAAACGGATGAGTAATCGGAACGACCAAGTGAAGCG
TCAGATGCACAACTGGGCGTTCCGCGAACTTCAGGAAATGCTCGCGTACAAAGCCGCAGAGTACGGGATTCGCGTAGAGCAGATACCGCCTGCGTTTACG
AGTCAGACCTGCTCGAAGTGTGGGCATCAGTCCAGTACGAACCGTAACTCGGATGGGTGGTTCGAGTGCAACGACTGTGGGTACTCGGTTGACGGCGATT
ACAACGCCTCGAAGAACATCGGCTTCAAATTACTAACTTTACCGTCGGGCAAACGTCCCGATGGGTTGGGCGACGGTCATCTCGCCCTCAAGTCTGGGAT
GGTGAACGGGAATGGCGATTACACCGCCTACTCCAATTCGGAGGTAGACCGGGAGTCCACGGACAAGCCCACGACTTCAGTCGTGGGTCGATGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 141 | 1394 | + | No |
AG : TnpB
ORF sequence :
MEVKRTIPVKLSVPEDRQDDLHQTIEQFNHACNYTVQHGRNDDGYLILNKSTIHGKVYHDLRDETDLPANLCVRAYSKAVEAMKSTVADWKKGNSRPLPR
FNEPSAVYDKRTLTIKDRSATLSTINGRVAVDYVLGDYQKSYLDDDDYEKRMGTLHYREDEGVFYLHIVIKKDVRERDSDKVLGVDLNLKNVAVTSTGSF
YDGGELLWGQNHYFRVRRSLQHKGTRSAKQVLRRLSGRENRFVLNRLHTISRRIGEEADSHGCSYIAVERLTHIRKRMSNRNDQVKRQMHNWAFRELQEM
LAYKAAEYGIRVEQIPPAFTSQTCSKCGHQSSTNRNSDGWFECNDCGYSVDGDYNASKNIGFKLLTLPSGKRPDGLGDGHLALKSGMVNGNGDYTAYSNS
EVDRESTDKPTTSVVGR
FNEPSAVYDKRTLTIKDRSATLSTINGRVAVDYVLGDYQKSYLDDDDYEKRMGTLHYREDEGVFYLHIVIKKDVRERDSDKVLGVDLNLKNVAVTSTGSF
YDGGELLWGQNHYFRVRRSLQHKGTRSAKQVLRRLSGRENRFVLNRLHTISRRIGEEADSHGCSYIAVERLTHIRKRMSNRNDQVKRQMHNWAFRELQEM
LAYKAAEYGIRVEQIPPAFTSQTCSKCGHQSSTNRNSDGWFECNDCGYSVDGDYNASKNIGFKLLTLPSGKRPDGLGDGHLALKSGMVNGNGDYTAYSNS
EVDRESTDKPTTSVVGR
Blast result :
Comments
ISHgi14 is 87% aa similar to ISHhu4.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T.(2020) (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T.(2020) (in preparation)