ISHgi14

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 1395 bp

Ends


Left end : ATAGATGCAAGGAGGAAGCCCACGGCTTTAGCCGTGGGAGGAATCCGACAATCCTCGAATCAAACCACGAGCGATAGCTGTCTGACTCCCCACGCCAGCC II struct. : Yes
Right end : GGGATGGTGAACGGGAATGGCGATTACACCGCCTACTCCAATTCGGAGGTAGACCGGGAGTCCACGGACAAGCCCACGACTTCAGTCGTGGGTCGATGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTGATTGCGGACTCACTCCATCCTCTCGTGAC

DNA sequence

ATAGATGCAAGGAGGAAGCCCACGGCTTTAGCCGTGGGAGGAATCCGACAATCCTCGAATCAAACCACGAGCGATAGCTGTCTGACTCCCCACGCCAGCC
GTGTGACTTATAAAACACAACTTCGTATGTGAAGTTACAGATGGAGGTCAAACGAACCATCCCGGTCAAACTCTCGGTTCCCGAAGACCGACAGGACGAC
CTCCATCAGACCATCGAACAGTTCAACCACGCCTGCAACTACACCGTCCAACACGGTCGCAATGACGACGGCTATCTCATCCTCAACAAGTCCACCATAC
ATGGCAAAGTGTACCACGACTTGCGAGACGAGACAGACCTACCCGCAAACCTCTGTGTTCGAGCCTACTCGAAAGCCGTCGAAGCGATGAAAAGCACCGT
CGCTGACTGGAAGAAGGGCAACAGCCGACCCCTTCCGAGATTCAACGAACCGTCCGCAGTGTACGACAAACGGACGTTGACCATCAAGGACAGGTCGGCC
ACCCTTTCGACCATCAACGGTAGGGTCGCCGTGGACTATGTTCTCGGAGACTACCAGAAGTCCTACCTCGATGATGACGACTACGAGAAGCGGATGGGAA
CGCTCCACTACCGCGAAGACGAGGGTGTGTTCTATCTTCACATCGTCATCAAGAAAGACGTTAGAGAACGAGACAGTGACAAGGTTCTGGGCGTGGATTT
GAACCTGAAGAACGTCGCCGTAACGAGTACAGGATCGTTCTACGATGGTGGCGAACTACTGTGGGGGCAGAACCACTACTTCCGCGTGCGTCGAAGCCTT
CAGCACAAAGGCACTCGCTCCGCAAAGCAGGTACTCCGGCGACTGTCGGGGCGAGAAAACCGCTTCGTGCTGAACCGCCTGCACACTATTTCTCGACGTA
TCGGGGAGGAGGCAGACTCCCACGGCTGTTCGTACATCGCCGTCGAACGCTTAACCCACATCCGCAAACGGATGAGTAATCGGAACGACCAAGTGAAGCG
TCAGATGCACAACTGGGCGTTCCGCGAACTTCAGGAAATGCTCGCGTACAAAGCCGCAGAGTACGGGATTCGCGTAGAGCAGATACCGCCTGCGTTTACG
AGTCAGACCTGCTCGAAGTGTGGGCATCAGTCCAGTACGAACCGTAACTCGGATGGGTGGTTCGAGTGCAACGACTGTGGGTACTCGGTTGACGGCGATT
ACAACGCCTCGAAGAACATCGGCTTCAAATTACTAACTTTACCGTCGGGCAAACGTCCCGATGGGTTGGGCGACGGTCATCTCGCCCTCAAGTCTGGGAT
GGTGAACGGGAATGGCGATTACACCGCCTACTCCAATTCGGAGGTAGACCGGGAGTCCACGGACAAGCCCACGACTTCAGTCGTGGGTCGATGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa1411394+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVKRTIPVKLSVPEDRQDDLHQTIEQFNHACNYTVQHGRNDDGYLILNKSTIHGKVYHDLRDETDLPANLCVRAYSKAVEAMKSTVADWKKGNSRPLPR
FNEPSAVYDKRTLTIKDRSATLSTINGRVAVDYVLGDYQKSYLDDDDYEKRMGTLHYREDEGVFYLHIVIKKDVRERDSDKVLGVDLNLKNVAVTSTGSF
YDGGELLWGQNHYFRVRRSLQHKGTRSAKQVLRRLSGRENRFVLNRLHTISRRIGEEADSHGCSYIAVERLTHIRKRMSNRNDQVKRQMHNWAFRELQEM
LAYKAAEYGIRVEQIPPAFTSQTCSKCGHQSSTNRNSDGWFECNDCGYSVDGDYNASKNIGFKLLTLPSGKRPDGLGDGHLALKSGMVNGNGDYTAYSNS
EVDRESTDKPTTSVVGR

 

Blast result :
Comments
ISHgi14 is 87% aa similar to ISHhu4.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T.(2020) (in preparation)