ISHgi13
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 1440 bp
Ends
Left end : ATGACTACGAGGAGGAAGCCCACGAGTTTACTCGTGGGAGGAATCCGACAGCCCATTCCACCAACCACGAGCGATAGCAAGCAGACTCCCCCCCACACAA II struct. : Yes
Right end : GGGACGCTGAACCTGAATGGCGATTTCCACGCCTCCGTCAAAACGACGGCAGAAGGGGAGTCCACTGACAAGCCCACGACTTCAGTCGTGGGTTACTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GATATTCGAATT | TCAC | TACAATCCTTAT | TGAC |
DNA sequence
ATGACTACGAGGAGGAAGCCCACGAGTTTACTCGTGGGAGGAATCCGACAGCCCATTCCACCAACCACGAGCGATAGCAAGCAGACTCCCCCCCACACAA
ACCCGAATTATTATAAAGAGCTAGTTCGATATGTGAATTAACGATGGAGGTGATTCGCACCGTCAAAGTCAAACTCGACGTCCCCGACGAGCGGTGCGAC
GACCTCCATCAAACGAAAAATCAGTTCCTCCACTGTGCAAACACGACCGCAGAGTGGGCGTGGAGACACCCAAACGACTACTGCGTGACCTCGAAACAGA
AAGCCGAAAAAGCCCTCTACGAGCGACTCCGCAACGAGACGGAGTTGACTGCAAACCTCGTACAGAAAGGGATCCGACGTGCTATCGAGGCCACGAAAAG
CGGTGTCGCCCGACTCAAGAAAGGCGACAAAACGAGTCAACCACACTTTGACGCATGGAGCGTCGTCTACGACAAGCGTTCAGCGACGTTCCACCGCGAC
CACGTTTCGCTCTCAACCGTGAACGGTCGCGTTGAGTGTGACTATGTGTTTCCCGACGACCCCGAGGGAACGCCGATTGGTGAGTACCTGTTGAACGAGG
ACTACGAGTTCCGTATGTCCACGTTGCAGTACGACCGCCAAACGGAGTCGTTCTATCTCCACGCTCGGATGCGCCGAACTGAAAGTGACGAGCAGTCCAC
AACTGATTCTTCTGACACCAAGCACAGAACAGTCCTTGGTGTTGACCTGAACGTGGATGGCTCGCTCGCTGTGACTTCCACAGGCGCGTTCATCGGAAAC
GCTGACGAGATGAACCATCAACGCCGAGAATTCGAGAAAAATCGTGGGTCGATGCAACAAGCAGGAACGCGGTCGGCGCACCTGTCGATTCAGTCGATGA
AAGATCGCGAACACCGCTGGATGCAGGACGAACTGCACCGTGTCTCAAACCGGATTCTCGAAGAAGCCCGTGACCACGAGTGTACGCACATCGCCTTCGA
GAATCTGACCGATATTCGTAATCGGATGGCTGGTGCAAAGCGATTCCATGTATGGGCGTTCCGACGCCTGTACCAGTACGTCGAATACAAAGCCGAGATG
TACAGCATCAAGATTGAACAGGTGAGTCCTGCGTACACGAGTCAACGGTGTTCGTCGTGTGGGTTTACACACGAATCGAATCGGCGGTCGAAGCACCAGT
TCGTGTGCCAGAAGTGCAAGTACGAACTGAACGCGGATTATAACGCGAGCAAGAATATCGCTCGTAAACTCTTGAAACGTCTCCACTCGGGGCAGAAGTC
TTCGAGTGGAGGCGCACCCTGTCAGTGTGCGCTAACGTCAGGGACGCTGAACCTGAATGGCGATTTCCACGCCTCCGTCAAAACGACGGCAGAAGGGGAG
TCCACTGACAAGCCCACGACTTCAGTCGTGGGTTACTGAC
ACCCGAATTATTATAAAGAGCTAGTTCGATATGTGAATTAACGATGGAGGTGATTCGCACCGTCAAAGTCAAACTCGACGTCCCCGACGAGCGGTGCGAC
GACCTCCATCAAACGAAAAATCAGTTCCTCCACTGTGCAAACACGACCGCAGAGTGGGCGTGGAGACACCCAAACGACTACTGCGTGACCTCGAAACAGA
AAGCCGAAAAAGCCCTCTACGAGCGACTCCGCAACGAGACGGAGTTGACTGCAAACCTCGTACAGAAAGGGATCCGACGTGCTATCGAGGCCACGAAAAG
CGGTGTCGCCCGACTCAAGAAAGGCGACAAAACGAGTCAACCACACTTTGACGCATGGAGCGTCGTCTACGACAAGCGTTCAGCGACGTTCCACCGCGAC
CACGTTTCGCTCTCAACCGTGAACGGTCGCGTTGAGTGTGACTATGTGTTTCCCGACGACCCCGAGGGAACGCCGATTGGTGAGTACCTGTTGAACGAGG
ACTACGAGTTCCGTATGTCCACGTTGCAGTACGACCGCCAAACGGAGTCGTTCTATCTCCACGCTCGGATGCGCCGAACTGAAAGTGACGAGCAGTCCAC
AACTGATTCTTCTGACACCAAGCACAGAACAGTCCTTGGTGTTGACCTGAACGTGGATGGCTCGCTCGCTGTGACTTCCACAGGCGCGTTCATCGGAAAC
GCTGACGAGATGAACCATCAACGCCGAGAATTCGAGAAAAATCGTGGGTCGATGCAACAAGCAGGAACGCGGTCGGCGCACCTGTCGATTCAGTCGATGA
AAGATCGCGAACACCGCTGGATGCAGGACGAACTGCACCGTGTCTCAAACCGGATTCTCGAAGAAGCCCGTGACCACGAGTGTACGCACATCGCCTTCGA
GAATCTGACCGATATTCGTAATCGGATGGCTGGTGCAAAGCGATTCCATGTATGGGCGTTCCGACGCCTGTACCAGTACGTCGAATACAAAGCCGAGATG
TACAGCATCAAGATTGAACAGGTGAGTCCTGCGTACACGAGTCAACGGTGTTCGTCGTGTGGGTTTACACACGAATCGAATCGGCGGTCGAAGCACCAGT
TCGTGTGCCAGAAGTGCAAGTACGAACTGAACGCGGATTATAACGCGAGCAAGAATATCGCTCGTAAACTCTTGAAACGTCTCCACTCGGGGCAGAAGTC
TTCGAGTGGAGGCGCACCCTGTCAGTGTGCGCTAACGTCAGGGACGCTGAACCTGAATGGCGATTTCCACGCCTCCGTCAAAACGACGGCAGAAGGGGAG
TCCACTGACAAGCCCACGACTTCAGTCGTGGGTTACTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1296 bp | 431 aa | 144 | 1439 | + | No |
AG : TnpB
ORF sequence :
MEVIRTVKVKLDVPDERCDDLHQTKNQFLHCANTTAEWAWRHPNDYCVTSKQKAEKALYERLRNETELTANLVQKGIRRAIEATKSGVARLKKGDKTSQP
HFDAWSVVYDKRSATFHRDHVSLSTVNGRVECDYVFPDDPEGTPIGEYLLNEDYEFRMSTLQYDRQTESFYLHARMRRTESDEQSTTDSSDTKHRTVLGV
DLNVDGSLAVTSTGAFIGNADEMNHQRREFEKNRGSMQQAGTRSAHLSIQSMKDREHRWMQDELHRVSNRILEEARDHECTHIAFENLTDIRNRMAGAKR
FHVWAFRRLYQYVEYKAEMYSIKIEQVSPAYTSQRCSSCGFTHESNRRSKHQFVCQKCKYELNADYNASKNIARKLLKRLHSGQKSSSGGAPCQCALTSG
TLNLNGDFHASVKTTAEGESTDKPTTSVVGY
HFDAWSVVYDKRSATFHRDHVSLSTVNGRVECDYVFPDDPEGTPIGEYLLNEDYEFRMSTLQYDRQTESFYLHARMRRTESDEQSTTDSSDTKHRTVLGV
DLNVDGSLAVTSTGAFIGNADEMNHQRREFEKNRGSMQQAGTRSAHLSIQSMKDREHRWMQDELHRVSNRILEEARDHECTHIAFENLTDIRNRMAGAKR
FHVWAFRRLYQYVEYKAEMYSIKIEQVSPAYTSQRCSSCGFTHESNRRSKHQFVCQKCKYELNADYNASKNIARKLLKRLHSGQKSSSGGAPCQCALTSG
TLNLNGDFHASVKTTAEGESTDKPTTSVVGY
Blast result :
Comments
ISHgi13 is 94% aa similar to ISHvo19.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)