ISHgi13

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 1440 bp

Ends


Left end : ATGACTACGAGGAGGAAGCCCACGAGTTTACTCGTGGGAGGAATCCGACAGCCCATTCCACCAACCACGAGCGATAGCAAGCAGACTCCCCCCCACACAA II struct. : Yes
Right end : GGGACGCTGAACCTGAATGGCGATTTCCACGCCTCCGTCAAAACGACGGCAGAAGGGGAGTCCACTGACAAGCCCACGACTTCAGTCGTGGGTTACTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GATATTCGAATTTCACTACAATCCTTATTGAC

DNA sequence

ATGACTACGAGGAGGAAGCCCACGAGTTTACTCGTGGGAGGAATCCGACAGCCCATTCCACCAACCACGAGCGATAGCAAGCAGACTCCCCCCCACACAA
ACCCGAATTATTATAAAGAGCTAGTTCGATATGTGAATTAACGATGGAGGTGATTCGCACCGTCAAAGTCAAACTCGACGTCCCCGACGAGCGGTGCGAC
GACCTCCATCAAACGAAAAATCAGTTCCTCCACTGTGCAAACACGACCGCAGAGTGGGCGTGGAGACACCCAAACGACTACTGCGTGACCTCGAAACAGA
AAGCCGAAAAAGCCCTCTACGAGCGACTCCGCAACGAGACGGAGTTGACTGCAAACCTCGTACAGAAAGGGATCCGACGTGCTATCGAGGCCACGAAAAG
CGGTGTCGCCCGACTCAAGAAAGGCGACAAAACGAGTCAACCACACTTTGACGCATGGAGCGTCGTCTACGACAAGCGTTCAGCGACGTTCCACCGCGAC
CACGTTTCGCTCTCAACCGTGAACGGTCGCGTTGAGTGTGACTATGTGTTTCCCGACGACCCCGAGGGAACGCCGATTGGTGAGTACCTGTTGAACGAGG
ACTACGAGTTCCGTATGTCCACGTTGCAGTACGACCGCCAAACGGAGTCGTTCTATCTCCACGCTCGGATGCGCCGAACTGAAAGTGACGAGCAGTCCAC
AACTGATTCTTCTGACACCAAGCACAGAACAGTCCTTGGTGTTGACCTGAACGTGGATGGCTCGCTCGCTGTGACTTCCACAGGCGCGTTCATCGGAAAC
GCTGACGAGATGAACCATCAACGCCGAGAATTCGAGAAAAATCGTGGGTCGATGCAACAAGCAGGAACGCGGTCGGCGCACCTGTCGATTCAGTCGATGA
AAGATCGCGAACACCGCTGGATGCAGGACGAACTGCACCGTGTCTCAAACCGGATTCTCGAAGAAGCCCGTGACCACGAGTGTACGCACATCGCCTTCGA
GAATCTGACCGATATTCGTAATCGGATGGCTGGTGCAAAGCGATTCCATGTATGGGCGTTCCGACGCCTGTACCAGTACGTCGAATACAAAGCCGAGATG
TACAGCATCAAGATTGAACAGGTGAGTCCTGCGTACACGAGTCAACGGTGTTCGTCGTGTGGGTTTACACACGAATCGAATCGGCGGTCGAAGCACCAGT
TCGTGTGCCAGAAGTGCAAGTACGAACTGAACGCGGATTATAACGCGAGCAAGAATATCGCTCGTAAACTCTTGAAACGTCTCCACTCGGGGCAGAAGTC
TTCGAGTGGAGGCGCACCCTGTCAGTGTGCGCTAACGTCAGGGACGCTGAACCTGAATGGCGATTTCCACGCCTCCGTCAAAACGACGGCAGAAGGGGAG
TCCACTGACAAGCCCACGACTTCAGTCGTGGGTTACTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1296 bp431 aa1441439+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVIRTVKVKLDVPDERCDDLHQTKNQFLHCANTTAEWAWRHPNDYCVTSKQKAEKALYERLRNETELTANLVQKGIRRAIEATKSGVARLKKGDKTSQP
HFDAWSVVYDKRSATFHRDHVSLSTVNGRVECDYVFPDDPEGTPIGEYLLNEDYEFRMSTLQYDRQTESFYLHARMRRTESDEQSTTDSSDTKHRTVLGV
DLNVDGSLAVTSTGAFIGNADEMNHQRREFEKNRGSMQQAGTRSAHLSIQSMKDREHRWMQDELHRVSNRILEEARDHECTHIAFENLTDIRNRMAGAKR
FHVWAFRRLYQYVEYKAEMYSIKIEQVSPAYTSQRCSSCGFTHESNRRSKHQFVCQKCKYELNADYNASKNIARKLLKRLHSGQKSSSGGAPCQCALTSG
TLNLNGDFHASVKTTAEGESTDKPTTSVVGY

 

Blast result :
Comments
ISHgi13 is 94% aa similar to ISHvo19.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)