ISHgi12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 1417 bp
Ends
Left end : AGATAAGCAAGGCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGACAACTCCTAAGCCATCAAATATAATCTATACATTTACAACACCGCAGTCCG II struct. : Yes
Right end : GTGACCCACTCGACCGTTCGAGGCTATCAGGCCGATGGTCGATTGGGAGTGTCCGATTAAACCACGGGAAGCCTCGGGGCTTGACCCCGAGGCAATTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GACGGGACAATT | CTAC | TCCGGCTGGACG | TCAC |
DNA sequence
AGATAAGCAAGGCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGACAACTCCTAAGCCATCAAATATAATCTATACATTTACAACACCGCAGTCCG
TTAAATACGGCATGGAAAAGTCGCTCACGAAGACATTAGTCTTCCAACTCCAACCCGAGGTCGAGCGACTTCTTTCTGAAGCCTACCACGAAGCCCGATG
GGTGTACAACCAGACCATCCAATTAGCCACCAACGGAATGGACTGGGGCGACATCTCGACCCGTCTCGAAAACGAAGCAAACTTCGTGAAGAACACCACG
CAACGAGTCGTCGCCAAGTCGCTTGAAGCACTTCAACAATCCTACGACCGCGACAACTACAACACGCCCAGTCACCAGAAAACTGGGCCGTACCCGTTGC
GAATGAACTTCACCGAAGGGTACAACCTCACACTCGGAGATGACGGGATACACTACCGTATCAGTGCCAAACCATACAACCCGGTCAAAGGCACACTTCG
TGGTTCGCCCGACAACCTCGAACTTCTCGAACAAGCACTCGAAAGCGATGAATGGCGTGTCGGGACGGCAGAAGCAATGGTTCGCAACGGCAACCACGAA
CTGCACGTCAACGTTACACACCTCGAAGCCGCCGTCCACGACAAACACAACGCTCAAACCGTCGTTGGTGTGGATATTAACGAGGATTGTGTAGCTCTTG
CCGCTCTTCGTGAAGACGACCTTGTTGATTCGGTGGTCATCGAATACCCTGAACTCAAGCAAGAGCGCCATCGGTACTTCACGATGCGAAAGCGGATGCA
GAACGTTGGGCAGACAGCGTTCAACCGCGTGTTCGAGAACAAAGAAGAACGATACGTTCACGACCAACTCCACCAAGTCTCCCGACGAATCGTGGAGTGG
ATTCAGCAATTCGAGTCGCCGCTTGTTGTGTTTGAAGACCTCAAGCATATTCGAGAGTCGATTGACTATGGCACTCGGATGAACCGGCGGTTGCACTCCT
TGCCGTTCCACAAACTCCGTTCGTTCGTCGTGTACAAAGCGGCGTTTGAGGGGATTCCGAGCGAGGAAATTGACCCGGCTTACACCAGTCAGACGTGTTC
TTTTACTGGGTGTGAGCATACGGCTCGGTCGAATCGGCAGAAAAAGCGGTTCAAGTGCAACGCATGTGGGCGGCAAGACCACGCAGACCGGAACGCGGCA
GTGAATATTGCGAAGAAAGGGTTGGAGTCGTTGAATCGAAATGTGCCTGCTCTCAAGACGTTGCCGAATATTCGGAAACTGCGACGGCAGGCATCGGGCT
GTGTGAATCAGCCGACTGTGACCCACTCGACCGTTCGAGGCTATCAGGCCGATGGTCGATTGGGAGTGTCCGATTAAACCACGGGAAGCCTCGGGGCTTG
ACCCCGAGGCAATTCAC
TTAAATACGGCATGGAAAAGTCGCTCACGAAGACATTAGTCTTCCAACTCCAACCCGAGGTCGAGCGACTTCTTTCTGAAGCCTACCACGAAGCCCGATG
GGTGTACAACCAGACCATCCAATTAGCCACCAACGGAATGGACTGGGGCGACATCTCGACCCGTCTCGAAAACGAAGCAAACTTCGTGAAGAACACCACG
CAACGAGTCGTCGCCAAGTCGCTTGAAGCACTTCAACAATCCTACGACCGCGACAACTACAACACGCCCAGTCACCAGAAAACTGGGCCGTACCCGTTGC
GAATGAACTTCACCGAAGGGTACAACCTCACACTCGGAGATGACGGGATACACTACCGTATCAGTGCCAAACCATACAACCCGGTCAAAGGCACACTTCG
TGGTTCGCCCGACAACCTCGAACTTCTCGAACAAGCACTCGAAAGCGATGAATGGCGTGTCGGGACGGCAGAAGCAATGGTTCGCAACGGCAACCACGAA
CTGCACGTCAACGTTACACACCTCGAAGCCGCCGTCCACGACAAACACAACGCTCAAACCGTCGTTGGTGTGGATATTAACGAGGATTGTGTAGCTCTTG
CCGCTCTTCGTGAAGACGACCTTGTTGATTCGGTGGTCATCGAATACCCTGAACTCAAGCAAGAGCGCCATCGGTACTTCACGATGCGAAAGCGGATGCA
GAACGTTGGGCAGACAGCGTTCAACCGCGTGTTCGAGAACAAAGAAGAACGATACGTTCACGACCAACTCCACCAAGTCTCCCGACGAATCGTGGAGTGG
ATTCAGCAATTCGAGTCGCCGCTTGTTGTGTTTGAAGACCTCAAGCATATTCGAGAGTCGATTGACTATGGCACTCGGATGAACCGGCGGTTGCACTCCT
TGCCGTTCCACAAACTCCGTTCGTTCGTCGTGTACAAAGCGGCGTTTGAGGGGATTCCGAGCGAGGAAATTGACCCGGCTTACACCAGTCAGACGTGTTC
TTTTACTGGGTGTGAGCATACGGCTCGGTCGAATCGGCAGAAAAAGCGGTTCAAGTGCAACGCATGTGGGCGGCAAGACCACGCAGACCGGAACGCGGCA
GTGAATATTGCGAAGAAAGGGTTGGAGTCGTTGAATCGAAATGTGCCTGCTCTCAAGACGTTGCCGAATATTCGGAAACTGCGACGGCAGGCATCGGGCT
GTGTGAATCAGCCGACTGTGACCCACTCGACCGTTCGAGGCTATCAGGCCGATGGTCGATTGGGAGTGTCCGATTAAACCACGGGAAGCCTCGGGGCTTG
ACCCCGAGGCAATTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 421 aa | 112 | 1377 | + | No |
AG : TnpB
ORF sequence :
MEKSLTKTLVFQLQPEVERLLSEAYHEARWVYNQTIQLATNGMDWGDISTRLENEANFVKNTTQRVVAKSLEALQQSYDRDNYNTPSHQKTGPYPLRMNF
TEGYNLTLGDDGIHYRISAKPYNPVKGTLRGSPDNLELLEQALESDEWRVGTAEAMVRNGNHELHVNVTHLEAAVHDKHNAQTVVGVDINEDCVALAALR
EDDLVDSVVIEYPELKQERHRYFTMRKRMQNVGQTAFNRVFENKEERYVHDQLHQVSRRIVEWIQQFESPLVVFEDLKHIRESIDYGTRMNRRLHSLPFH
KLRSFVVYKAAFEGIPSEEIDPAYTSQTCSFTGCEHTARSNRQKKRFKCNACGRQDHADRNAAVNIAKKGLESLNRNVPALKTLPNIRKLRRQASGCVNQ
PTVTHSTVRGYQADGRLGVSD
TEGYNLTLGDDGIHYRISAKPYNPVKGTLRGSPDNLELLEQALESDEWRVGTAEAMVRNGNHELHVNVTHLEAAVHDKHNAQTVVGVDINEDCVALAALR
EDDLVDSVVIEYPELKQERHRYFTMRKRMQNVGQTAFNRVFENKEERYVHDQLHQVSRRIVEWIQQFESPLVVFEDLKHIRESIDYGTRMNRRLHSLPFH
KLRSFVVYKAAFEGIPSEEIDPAYTSQTCSFTGCEHTARSNRQKKRFKCNACGRQDHADRNAAVNIAKKGLESLNRNVPALKTLPNIRKLRRQASGCVNQ
PTVTHSTVRGYQADGRLGVSD
Blast result :
Comments
ISHgi12 is 95% aa similar to ISHarch16.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)