ISHgi12

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 1417 bp

Ends


Left end : AGATAAGCAAGGCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGACAACTCCTAAGCCATCAAATATAATCTATACATTTACAACACCGCAGTCCG II struct. : Yes
Right end : GTGACCCACTCGACCGTTCGAGGCTATCAGGCCGATGGTCGATTGGGAGTGTCCGATTAAACCACGGGAAGCCTCGGGGCTTGACCCCGAGGCAATTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GACGGGACAATTCTACTCCGGCTGGACGTCAC

DNA sequence

AGATAAGCAAGGCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGACAACTCCTAAGCCATCAAATATAATCTATACATTTACAACACCGCAGTCCG
TTAAATACGGCATGGAAAAGTCGCTCACGAAGACATTAGTCTTCCAACTCCAACCCGAGGTCGAGCGACTTCTTTCTGAAGCCTACCACGAAGCCCGATG
GGTGTACAACCAGACCATCCAATTAGCCACCAACGGAATGGACTGGGGCGACATCTCGACCCGTCTCGAAAACGAAGCAAACTTCGTGAAGAACACCACG
CAACGAGTCGTCGCCAAGTCGCTTGAAGCACTTCAACAATCCTACGACCGCGACAACTACAACACGCCCAGTCACCAGAAAACTGGGCCGTACCCGTTGC
GAATGAACTTCACCGAAGGGTACAACCTCACACTCGGAGATGACGGGATACACTACCGTATCAGTGCCAAACCATACAACCCGGTCAAAGGCACACTTCG
TGGTTCGCCCGACAACCTCGAACTTCTCGAACAAGCACTCGAAAGCGATGAATGGCGTGTCGGGACGGCAGAAGCAATGGTTCGCAACGGCAACCACGAA
CTGCACGTCAACGTTACACACCTCGAAGCCGCCGTCCACGACAAACACAACGCTCAAACCGTCGTTGGTGTGGATATTAACGAGGATTGTGTAGCTCTTG
CCGCTCTTCGTGAAGACGACCTTGTTGATTCGGTGGTCATCGAATACCCTGAACTCAAGCAAGAGCGCCATCGGTACTTCACGATGCGAAAGCGGATGCA
GAACGTTGGGCAGACAGCGTTCAACCGCGTGTTCGAGAACAAAGAAGAACGATACGTTCACGACCAACTCCACCAAGTCTCCCGACGAATCGTGGAGTGG
ATTCAGCAATTCGAGTCGCCGCTTGTTGTGTTTGAAGACCTCAAGCATATTCGAGAGTCGATTGACTATGGCACTCGGATGAACCGGCGGTTGCACTCCT
TGCCGTTCCACAAACTCCGTTCGTTCGTCGTGTACAAAGCGGCGTTTGAGGGGATTCCGAGCGAGGAAATTGACCCGGCTTACACCAGTCAGACGTGTTC
TTTTACTGGGTGTGAGCATACGGCTCGGTCGAATCGGCAGAAAAAGCGGTTCAAGTGCAACGCATGTGGGCGGCAAGACCACGCAGACCGGAACGCGGCA
GTGAATATTGCGAAGAAAGGGTTGGAGTCGTTGAATCGAAATGTGCCTGCTCTCAAGACGTTGCCGAATATTCGGAAACTGCGACGGCAGGCATCGGGCT
GTGTGAATCAGCCGACTGTGACCCACTCGACCGTTCGAGGCTATCAGGCCGATGGTCGATTGGGAGTGTCCGATTAAACCACGGGAAGCCTCGGGGCTTG
ACCCCGAGGCAATTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1266 bp421 aa1121377+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEKSLTKTLVFQLQPEVERLLSEAYHEARWVYNQTIQLATNGMDWGDISTRLENEANFVKNTTQRVVAKSLEALQQSYDRDNYNTPSHQKTGPYPLRMNF
TEGYNLTLGDDGIHYRISAKPYNPVKGTLRGSPDNLELLEQALESDEWRVGTAEAMVRNGNHELHVNVTHLEAAVHDKHNAQTVVGVDINEDCVALAALR
EDDLVDSVVIEYPELKQERHRYFTMRKRMQNVGQTAFNRVFENKEERYVHDQLHQVSRRIVEWIQQFESPLVVFEDLKHIRESIDYGTRMNRRLHSLPFH
KLRSFVVYKAAFEGIPSEEIDPAYTSQTCSFTGCEHTARSNRQKKRFKCNACGRQDHADRNAAVNIAKKGLESLNRNVPALKTLPNIRKLRRQASGCVNQ
PTVTHSTVRGYQADGRLGVSD

 

Blast result :
Comments
ISHgi12 is 95% aa similar to ISHarch16.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)