ISHgi11
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 1425 bp
Ends
Left end : GGAAGTTCGAGGAGAAAGCCCCGTGCTTTAGCATGGGGATGAATCCGACACTACCTTTCACGAACCACCGACGATAGCACAGCCTGATATTCCAATAGTT II struct. : Yes
Right end : TCGACGGGTCACGCGAAAGCGTACTTGAACCCCGAGGAAACGCGCAACCTGAATATCCACTTCGTGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCAATTCGAGAT | TTAC | ATCAATGAGAAC | TCAA |
DNA sequence
GGAAGTTCGAGGAGAAAGCCCCGTGCTTTAGCATGGGGATGAATCCGACACTACCTTTCACGAACCACCGACGATAGCACAGCCTGATATTCCAATAGTT
TCTTAACGCAACGTACCCGATTACAGTTGTAATGGTCACGGTGACTGTCACCGCGAAGTTCCACAATCCATCCCTCTCACGGCGCAAAGAGTGGCAACAG
GGCACTCGCCTCTACCGTAACACCAAACAGTTCTGTATCGACGGATGGGAGAACGGCGACTTCGGCAAATCCGTGACCACAGCCAGCATCGACAACGGCC
TCTACTCGGCCATTCAGAACCAAGCCATCCGAGAGGCGAAATCCGACCACAATAAGGACGGGAAGGTTCGCTACCGAGAGAGTCAACCGTTCGCCGTCAA
CAACCAGAACTGGGAAATCGACGCAACCGAGAACGGCACAGTCGTCGTCGGCTTCCCATGCGTCTCCCAATGGTGGTACACGCCTATCGAAGTGTACGAC
GACATTGCCGACCCTGTAGACCGACTGGTTGAGGGTGACGCCAAGAAGACACGGCTTCAGGTCTACCGTCGTGGTGACGACTGGCACTGTACGTTCAACG
CCGAGTACGATGCCGACACGTCGGGTGAGACGCCCATCGGTGTCGATATTGGTGAACGGCACATCCTCGCGGTGACGGCCTACGGTGAGGGCGAGTCAAT
GCTGGTGTCGGGTGGTGAGGCGAAGTACGTTCGACGCAAATATCGTTCCCTACGCGATTCGCTTTCGGAAGCGGGTGCGCTTCGCGCACGTAACCGTGTG
GGTGACAAAGAACAGCGTCGAATTAAGGACTTGAATCACAAACTCTCCCGTCGTCTCATCACGTTCGCGGAACAGTTCGAGAACCCCGTCATTCGGTTGG
AAGACCTCGAAGGAATCCGTGAGAATAGTTCGTGGTCGGGTGTCCACTCGTGGCACTTCCACCAACTCCAACAGTTCATCACGTACAAAGCCGAACGTGC
GGGTATTCGCGTCGAGAAGGTCGATGCGTACCACACCAGTCAGCGGTGTTCGGCGTGTGGTTCGATGGGAACCCGTGATGGCGACCACTTTTTGTGTTCG
GAGTGCGGTCGTGGACGCCACGCTGACCTGAACGCCTCGGAGAATATCGCACAACGAGAGGGAGAAACATGCACGGCCTAACACTTCGGGTGAGGCGAAC
CGTGCTACCTCGCTGGTTGAATAGCCAGCCGTCGTTGACGCCCGCTGTATGCGGGGAGGAAGGCCCCATTGACAGGGCTACACGCGCTGTAAAGCACACC
GTTGGTCACAACTCGGTGGCAACCTTCGACGGGTCACGCGAAAGCGTACTTGAACCCCGAGGAAACGCGCAACCTGAATATCCACTTCGTGGAATCCTCG
CCCTTTAGGGCGGGGAGGATGTCAA
TCTTAACGCAACGTACCCGATTACAGTTGTAATGGTCACGGTGACTGTCACCGCGAAGTTCCACAATCCATCCCTCTCACGGCGCAAAGAGTGGCAACAG
GGCACTCGCCTCTACCGTAACACCAAACAGTTCTGTATCGACGGATGGGAGAACGGCGACTTCGGCAAATCCGTGACCACAGCCAGCATCGACAACGGCC
TCTACTCGGCCATTCAGAACCAAGCCATCCGAGAGGCGAAATCCGACCACAATAAGGACGGGAAGGTTCGCTACCGAGAGAGTCAACCGTTCGCCGTCAA
CAACCAGAACTGGGAAATCGACGCAACCGAGAACGGCACAGTCGTCGTCGGCTTCCCATGCGTCTCCCAATGGTGGTACACGCCTATCGAAGTGTACGAC
GACATTGCCGACCCTGTAGACCGACTGGTTGAGGGTGACGCCAAGAAGACACGGCTTCAGGTCTACCGTCGTGGTGACGACTGGCACTGTACGTTCAACG
CCGAGTACGATGCCGACACGTCGGGTGAGACGCCCATCGGTGTCGATATTGGTGAACGGCACATCCTCGCGGTGACGGCCTACGGTGAGGGCGAGTCAAT
GCTGGTGTCGGGTGGTGAGGCGAAGTACGTTCGACGCAAATATCGTTCCCTACGCGATTCGCTTTCGGAAGCGGGTGCGCTTCGCGCACGTAACCGTGTG
GGTGACAAAGAACAGCGTCGAATTAAGGACTTGAATCACAAACTCTCCCGTCGTCTCATCACGTTCGCGGAACAGTTCGAGAACCCCGTCATTCGGTTGG
AAGACCTCGAAGGAATCCGTGAGAATAGTTCGTGGTCGGGTGTCCACTCGTGGCACTTCCACCAACTCCAACAGTTCATCACGTACAAAGCCGAACGTGC
GGGTATTCGCGTCGAGAAGGTCGATGCGTACCACACCAGTCAGCGGTGTTCGGCGTGTGGTTCGATGGGAACCCGTGATGGCGACCACTTTTTGTGTTCG
GAGTGCGGTCGTGGACGCCACGCTGACCTGAACGCCTCGGAGAATATCGCACAACGAGAGGGAGAAACATGCACGGCCTAACACTTCGGGTGAGGCGAAC
CGTGCTACCTCGCTGGTTGAATAGCCAGCCGTCGTTGACGCCCGCTGTATGCGGGGAGGAAGGCCCCATTGACAGGGCTACACGCGCTGTAAAGCACACC
GTTGGTCACAACTCGGTGGCAACCTTCGACGGGTCACGCGAAAGCGTACTTGAACCCCGAGGAAACGCGCAACCTGAATATCCACTTCGTGGAATCCTCG
CCCTTTAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 132 | 1181 | + | No |
AG : TnpB
ORF sequence :
MVTVTVTAKFHNPSLSRRKEWQQGTRLYRNTKQFCIDGWENGDFGKSVTTASIDNGLYSAIQNQAIREAKSDHNKDGKVRYRESQPFAVNNQNWEIDATE
NGTVVVGFPCVSQWWYTPIEVYDDIADPVDRLVEGDAKKTRLQVYRRGDDWHCTFNAEYDADTSGETPIGVDIGERHILAVTAYGEGESMLVSGGEAKYV
RRKYRSLRDSLSEAGALRARNRVGDKEQRRIKDLNHKLSRRLITFAEQFENPVIRLEDLEGIRENSSWSGVHSWHFHQLQQFITYKAERAGIRVEKVDAY
HTSQRCSACGSMGTRDGDHFLCSECGRGRHADLNASENIAQREGETCTA
NGTVVVGFPCVSQWWYTPIEVYDDIADPVDRLVEGDAKKTRLQVYRRGDDWHCTFNAEYDADTSGETPIGVDIGERHILAVTAYGEGESMLVSGGEAKYV
RRKYRSLRDSLSEAGALRARNRVGDKEQRRIKDLNHKLSRRLITFAEQFENPVIRLEDLEGIRENSSWSGVHSWHFHQLQQFITYKAERAGIRVEKVDAY
HTSQRCSACGSMGTRDGDHFLCSECGRGRHADLNASENIAQREGETCTA
Blast result :
Comments
ISHgi11 is 96% aa similar to ISHbo7.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)