ISHgi11

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 1425 bp

Ends


Left end : GGAAGTTCGAGGAGAAAGCCCCGTGCTTTAGCATGGGGATGAATCCGACACTACCTTTCACGAACCACCGACGATAGCACAGCCTGATATTCCAATAGTT II struct. : Yes
Right end : TCGACGGGTCACGCGAAAGCGTACTTGAACCCCGAGGAAACGCGCAACCTGAATATCCACTTCGTGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TCAATTCGAGATTTACATCAATGAGAACTCAA

DNA sequence

GGAAGTTCGAGGAGAAAGCCCCGTGCTTTAGCATGGGGATGAATCCGACACTACCTTTCACGAACCACCGACGATAGCACAGCCTGATATTCCAATAGTT
TCTTAACGCAACGTACCCGATTACAGTTGTAATGGTCACGGTGACTGTCACCGCGAAGTTCCACAATCCATCCCTCTCACGGCGCAAAGAGTGGCAACAG
GGCACTCGCCTCTACCGTAACACCAAACAGTTCTGTATCGACGGATGGGAGAACGGCGACTTCGGCAAATCCGTGACCACAGCCAGCATCGACAACGGCC
TCTACTCGGCCATTCAGAACCAAGCCATCCGAGAGGCGAAATCCGACCACAATAAGGACGGGAAGGTTCGCTACCGAGAGAGTCAACCGTTCGCCGTCAA
CAACCAGAACTGGGAAATCGACGCAACCGAGAACGGCACAGTCGTCGTCGGCTTCCCATGCGTCTCCCAATGGTGGTACACGCCTATCGAAGTGTACGAC
GACATTGCCGACCCTGTAGACCGACTGGTTGAGGGTGACGCCAAGAAGACACGGCTTCAGGTCTACCGTCGTGGTGACGACTGGCACTGTACGTTCAACG
CCGAGTACGATGCCGACACGTCGGGTGAGACGCCCATCGGTGTCGATATTGGTGAACGGCACATCCTCGCGGTGACGGCCTACGGTGAGGGCGAGTCAAT
GCTGGTGTCGGGTGGTGAGGCGAAGTACGTTCGACGCAAATATCGTTCCCTACGCGATTCGCTTTCGGAAGCGGGTGCGCTTCGCGCACGTAACCGTGTG
GGTGACAAAGAACAGCGTCGAATTAAGGACTTGAATCACAAACTCTCCCGTCGTCTCATCACGTTCGCGGAACAGTTCGAGAACCCCGTCATTCGGTTGG
AAGACCTCGAAGGAATCCGTGAGAATAGTTCGTGGTCGGGTGTCCACTCGTGGCACTTCCACCAACTCCAACAGTTCATCACGTACAAAGCCGAACGTGC
GGGTATTCGCGTCGAGAAGGTCGATGCGTACCACACCAGTCAGCGGTGTTCGGCGTGTGGTTCGATGGGAACCCGTGATGGCGACCACTTTTTGTGTTCG
GAGTGCGGTCGTGGACGCCACGCTGACCTGAACGCCTCGGAGAATATCGCACAACGAGAGGGAGAAACATGCACGGCCTAACACTTCGGGTGAGGCGAAC
CGTGCTACCTCGCTGGTTGAATAGCCAGCCGTCGTTGACGCCCGCTGTATGCGGGGAGGAAGGCCCCATTGACAGGGCTACACGCGCTGTAAAGCACACC
GTTGGTCACAACTCGGTGGCAACCTTCGACGGGTCACGCGAAAGCGTACTTGAACCCCGAGGAAACGCGCAACCTGAATATCCACTTCGTGGAATCCTCG
CCCTTTAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1050 bp349 aa1321181+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MVTVTVTAKFHNPSLSRRKEWQQGTRLYRNTKQFCIDGWENGDFGKSVTTASIDNGLYSAIQNQAIREAKSDHNKDGKVRYRESQPFAVNNQNWEIDATE
NGTVVVGFPCVSQWWYTPIEVYDDIADPVDRLVEGDAKKTRLQVYRRGDDWHCTFNAEYDADTSGETPIGVDIGERHILAVTAYGEGESMLVSGGEAKYV
RRKYRSLRDSLSEAGALRARNRVGDKEQRRIKDLNHKLSRRLITFAEQFENPVIRLEDLEGIRENSSWSGVHSWHFHQLQQFITYKAERAGIRVEKVDAY
HTSQRCSACGSMGTRDGDHFLCSECGRGRHADLNASENIAQREGETCTA

 

Blast result :
Comments
ISHgi11 is 96% aa similar to ISHbo7.
References
1] Pfeiffer, F. (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (2020) (in preparation)