ISLmo12
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP007583.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes XYSN |
DNA section
IS Length : 1373 bp
Ends
IR Length : 23/33
IRL : GGGAGTGTAAAATAAACTGTGTAAATAATGAATCCTAGGTTCATTGTTTA
IRR : GGGTTTGTCAAGAAAAGCGTGTAATTAAGAAATAGAAATATAATGCGACA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gcctgataaaaggct | AAACAAAG | cgtttctgtttttta | 8 |
| tccaaactagaatga | AACCGCTA | tacaatttgcctcta | 8 |
| gacatgtattaaatc | AATTAAGC | ccacattatttggta | 8 |
| ggctgcttgtttcct | GAAATTAA | cgggagattggtagc | 8 |
| caaaattaataacga | ATTTAAAT | gtcgtatggaatact | 8 |
| gctaataatataaga | AATAATGC | tattatcatagcgat | 8 |
| atctatcaaattcca | GCAGCTTT | tttaaatttcttgat | 8 |
DNA sequence
GGGAGTGTAAAATAAACTGTGTAAATAATGAATCCTAGGTTCATTGTTTATGCAGTTTTTCTTTTTTGGTACAATGAATAAAAAACCGAAAGGATGAGAG
TAAGATGCCAAAGAAAAAGCGTGATCCTAAAACCGTTGCCCTTGCAAAAGCCATTGTGGAAGAATATCAACCGGAGTCTGTGGAAGAGATGCAAAGTGCC
TTAAAAGACGTATTTGGACCGCTCTTTGAGCAATTATTACAAGGAGAAATGGAACATCATCTTGGTTATACCTCCCATTCTCGCGAAGACAAAGAAGATG
AAAATCGGCGCAATGGGTATGGGAGTAAAACGGTGCGAACGAGTTATGGCGAAGTTCCTATCGATGTACCACGAGATCGTTCTGGTACCTTTGAACCGCA
GGTCATTCCAAAACGTCAGAAAGATGTCTCCGCGATTGAAAACAAGGTGCTAGCTATGTATGCACGCGGTATGTCACAACGAGATATAGCCAAAACAATT
GAAGATATTTATGGTTTTCAGATTTCACATGACATGATTTCAAATATCACCGATACGGTATTGCCAGAATTAGAAACGTGGCAGAATCGTCCTTTGTCCA
AATGTTATGCTTTTTTATTTGTAGACTGCATGTATGTGACGATTCGTGATGGCTATGAAGCCAAGGGCTATGCCGTTTACACGATTTTGGGCTATACCCT
ACAAGGTGACAAGGAAATACTTGGCCTTTGGCTTAATGAGAGTGAAAGTAAAAATCGGTGGATGCAGATTTTTGACGAGCTAAAAGCGCGTGGCGTAGAG
GATGTATTTTTCCTTTCGATGGATGGTGTATCTGGTTTAGAAGAAGGTGCCAAAGCCATTTTTCCAACGGTAGTTGTCCAGCGCTGTATTGTCCACCTTG
TTCGAAATTCACTCCGTTATGTGCCATCGAAAGATTATAAAGCCTTTACGGCTTCTCTTAAGAAATTATATGGTGCCCCTTCTCTAAAAGCCTGTCAAAG
CCAATTCGAGACCTTTCGACAACAGTGGAGTCAGTATCCTGGTGCTATCGATGTCTGGGTGCGTCATTTCAAGCATGTGGAGCAATTATTTGATTATGGC
AGCGCCATTCGTAAAATCATGTATACTACAAATGCCGTGGAGAGCGTCCATGCCAGCTTTCGAAAGGTTACGAAGAAAGGCGCCTTCCCGCAGGAAAACG
CCTTACTAAAAGTCCTTTATTTACGCGTCAAAGAACTCCATATGAAATGGGCAGATGGCCATGTTCAAAACTGGTCACTCGTCATGAACCAGCTTCTTCT
TTTGGATTCTCTCAAAGATCGTGTGTCGCATTATATTTCTATTTCTTAATTACACGCTTTTCTTGACAAACCC
TAAGATGCCAAAGAAAAAGCGTGATCCTAAAACCGTTGCCCTTGCAAAAGCCATTGTGGAAGAATATCAACCGGAGTCTGTGGAAGAGATGCAAAGTGCC
TTAAAAGACGTATTTGGACCGCTCTTTGAGCAATTATTACAAGGAGAAATGGAACATCATCTTGGTTATACCTCCCATTCTCGCGAAGACAAAGAAGATG
AAAATCGGCGCAATGGGTATGGGAGTAAAACGGTGCGAACGAGTTATGGCGAAGTTCCTATCGATGTACCACGAGATCGTTCTGGTACCTTTGAACCGCA
GGTCATTCCAAAACGTCAGAAAGATGTCTCCGCGATTGAAAACAAGGTGCTAGCTATGTATGCACGCGGTATGTCACAACGAGATATAGCCAAAACAATT
GAAGATATTTATGGTTTTCAGATTTCACATGACATGATTTCAAATATCACCGATACGGTATTGCCAGAATTAGAAACGTGGCAGAATCGTCCTTTGTCCA
AATGTTATGCTTTTTTATTTGTAGACTGCATGTATGTGACGATTCGTGATGGCTATGAAGCCAAGGGCTATGCCGTTTACACGATTTTGGGCTATACCCT
ACAAGGTGACAAGGAAATACTTGGCCTTTGGCTTAATGAGAGTGAAAGTAAAAATCGGTGGATGCAGATTTTTGACGAGCTAAAAGCGCGTGGCGTAGAG
GATGTATTTTTCCTTTCGATGGATGGTGTATCTGGTTTAGAAGAAGGTGCCAAAGCCATTTTTCCAACGGTAGTTGTCCAGCGCTGTATTGTCCACCTTG
TTCGAAATTCACTCCGTTATGTGCCATCGAAAGATTATAAAGCCTTTACGGCTTCTCTTAAGAAATTATATGGTGCCCCTTCTCTAAAAGCCTGTCAAAG
CCAATTCGAGACCTTTCGACAACAGTGGAGTCAGTATCCTGGTGCTATCGATGTCTGGGTGCGTCATTTCAAGCATGTGGAGCAATTATTTGATTATGGC
AGCGCCATTCGTAAAATCATGTATACTACAAATGCCGTGGAGAGCGTCCATGCCAGCTTTCGAAAGGTTACGAAGAAAGGCGCCTTCCCGCAGGAAAACG
CCTTACTAAAAGTCCTTTATTTACGCGTCAAAGAACTCCATATGAAATGGGCAGATGGCCATGTTCAAAACTGGTCACTCGTCATGAACCAGCTTCTTCT
TTTGGATTCTCTCAAAGATCGTGTGTCGCATTATATTTCTATTTCTTAATTACACGCTTTTCTTGACAAACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1245 bp | 414 aa | 105 | 1349 | + | No |
Chemistry : DDE
ORF sequence :
MPKKKRDPKTVALAKAIVEEYQPESVEEMQSALKDVFGPLFEQLLQGEMEHHLGYTSHSREDKEDENRRNGYGSKTVRTSYGEVPIDVPRDRSGTFEPQV
IPKRQKDVSAIENKVLAMYARGMSQRDIAKTIEDIYGFQISHDMISNITDTVLPELETWQNRPLSKCYAFLFVDCMYVTIRDGYEAKGYAVYTILGYTLQ
GDKEILGLWLNESESKNRWMQIFDELKARGVEDVFFLSMDGVSGLEEGAKAIFPTVVVQRCIVHLVRNSLRYVPSKDYKAFTASLKKLYGAPSLKACQSQ
FETFRQQWSQYPGAIDVWVRHFKHVEQLFDYGSAIRKIMYTTNAVESVHASFRKVTKKGAFPQENALLKVLYLRVKELHMKWADGHVQNWSLVMNQLLLL
DSLKDRVSHYISIS
IPKRQKDVSAIENKVLAMYARGMSQRDIAKTIEDIYGFQISHDMISNITDTVLPELETWQNRPLSKCYAFLFVDCMYVTIRDGYEAKGYAVYTILGYTLQ
GDKEILGLWLNESESKNRWMQIFDELKARGVEDVFFLSMDGVSGLEEGAKAIFPTVVVQRCIVHLVRNSLRYVPSKDYKAFTASLKKLYGAPSLKACQSQ
FETFRQQWSQYPGAIDVWVRHFKHVEQLFDYGSAIRKIMYTTNAVESVHASFRKVTKKGAFPQENALLKVLYLRVKELHMKWADGHVQNWSLVMNQLLLL
DSLKDRVSHYISIS
Blast result :
Comments
ISLmo12 is 87% aa similar to ISBsu2.
ISLmo12 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN, where it is present in multiple copies.
Ends based on empty insertion sites in other strains.
ISLmo12 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN, where it is present in multiple copies.
Ends based on empty insertion sites in other strains.
References
1] Chmielowska, C. and Bartosik, D. (2020) Direct submission.
2] Yin Y, Yao H, Doijad S, et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun. 2019;10(1):4283. doi:10.1038/s41467-019-12072-1
2] Yin Y, Yao H, Doijad S, et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun. 2019;10(1):4283. doi:10.1038/s41467-019-12072-1