ISH27-2
- Family ISH3
- Group
Isoform Synonym(s) ISH61
Accession number | Transposition | Origin | Host |
---|---|---|---|
X54433 | Y | Halobacterium salinarum | Halobacterium sp. SB3 Halobacterium salinarum PHH1 plasmid pHH1 |
DNA section
IS Length : 1389 bp
Ends
IR Length : 16
IRL : CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCATCGCCGGCTAATCCGACTTGAGCCATCTGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | ATTCT | NNNNNNNNNN | 5 |
NNNNNNNNNN | AGAGT | NNNNNNNNNN | 5 |
NNNNNNNNNN | AACCT | NNNNNNNNNN | 5 |
NNNNNNNNNN | AGTAT | NNNNNNNNNN | 5 |
NNNNNNNNNN | AGTCC | NNNNNNNNNN | 5 |
NNNNNNNNNN | AAGCT | NNNNNNNNNN | 5 |
DNA sequence
CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTGTCTACGACCCAGCAAGCAGACAGTGAGATTCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTGCCTTGACGAGGAAGTTTCTCTCAACCTCGCCAACAACGCTGAAATCGGTGCAGAGGACATCTACGAGGTCCTCGTCGGCGCGACC
GCCGACGGGACCTCGATCTCGACGCTGTGCAACTCCAGTGAAGACTCCCCATCGGCGAACACGATTCTCTATCATCTACGGACGAAGTTCGAGCCGGAAC
GGCTCGAACGCGTCGCTAACACGCTTCTTCGCCGAGACATCGTCGAACTGCTCCCCGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCCGAGGCGAAGCGAGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGCTACACGCTGGCGGTCCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCTGAGTTCCTTGGTGTACTCGACGGCCTTGACACCGACG
TCAAGGCCGTCTATCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGTTACAGACGCACAACTACGCCTACGTTGTCCCGATCATCCGGTGGGG
TGAAGCGATTCAGCAGGAACTCTCGGAAGGGTGGAGTCGCGTCATCCAACACGATCTGACGGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGGTACGACGAGCACGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGAGAATCCACGCG
ACGCTCGATACCACTACTCGAAACGGTTCGGTATCGAGTCGAGCTATCGGTTGTCTGAGCAAGCGATAGCGACGACAACGACGCGAGACTCCACGGTGAG
ACTGCTGTACGTCGTGGTGAGTCTGCTGTTGCAGAACACGTGGCGGTATCTGCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCCGACCGGCCACCAGACGACC
GGTTCCACCGGTAGTCACCCACCGAGTACGGCGTCTCCGCAAGTGGCAACGCTGTCGCGTCGGCGGCTGAGCGCCGCCGACAGCGACACGTCCGCCTTCG
ATCAGCGTTGCTCAACCGTGATCGACGACTCACCACAACAGAACAGATGGCTCAAGTCGGATTAGCCGGCGATGCTTTGTGAGGTACTG
CTTCCTCGTCAACTGCCTTGACGAGGAAGTTTCTCTCAACCTCGCCAACAACGCTGAAATCGGTGCAGAGGACATCTACGAGGTCCTCGTCGGCGCGACC
GCCGACGGGACCTCGATCTCGACGCTGTGCAACTCCAGTGAAGACTCCCCATCGGCGAACACGATTCTCTATCATCTACGGACGAAGTTCGAGCCGGAAC
GGCTCGAACGCGTCGCTAACACGCTTCTTCGCCGAGACATCGTCGAACTGCTCCCCGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCCGAGGCGAAGCGAGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGCTACACGCTGGCGGTCCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCTGAGTTCCTTGGTGTACTCGACGGCCTTGACACCGACG
TCAAGGCCGTCTATCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGTTACAGACGCACAACTACGCCTACGTTGTCCCGATCATCCGGTGGGG
TGAAGCGATTCAGCAGGAACTCTCGGAAGGGTGGAGTCGCGTCATCCAACACGATCTGACGGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGGTACGACGAGCACGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGAGAATCCACGCG
ACGCTCGATACCACTACTCGAAACGGTTCGGTATCGAGTCGAGCTATCGGTTGTCTGAGCAAGCGATAGCGACGACAACGACGCGAGACTCCACGGTGAG
ACTGCTGTACGTCGTGGTGAGTCTGCTGTTGCAGAACACGTGGCGGTATCTGCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCCGACCGGCCACCAGACGACC
GGTTCCACCGGTAGTCACCCACCGAGTACGGCGTCTCCGCAAGTGGCAACGCTGTCGCGTCGGCGGCTGAGCGCCGCCGACAGCGACACGTCCGCCTTCG
ATCAGCGTTGCTCAACCGTGATCGACGACTCACCACAACAGAACAGATGGCTCAAGTCGGATTAGCCGGCGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 48 | 1214 | + | No |
Chemistry : DDE
ORF sequence :
MSTTQQADSEIHEDQLLNFLVNCLDEEVSLNLANNAEIGAEDIYEVLVGATADGTSISTLCNSSEDSPSANTILYHLRTKFEPERLERVANTLLRRDIVE
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGVLDGLDTDVKAVYLDRGFYDSKCL
TLLQTHNYAYVVPIIRWGEAIQQELSEGWSRVIQHDLTGKLDGHSWTVEFPVYIDCTYLNGRYDEHGVARHGYAADAPFIENPRDARYHYSKRFGIESSY
RLSEQAIATTTTRDSTVRLLYVVVSLLLQNTWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPADRPPDDRFHR
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGVLDGLDTDVKAVYLDRGFYDSKCL
TLLQTHNYAYVVPIIRWGEAIQQELSEGWSRVIQHDLTGKLDGHSWTVEFPVYIDCTYLNGRYDEHGVARHGYAADAPFIENPRDARYHYSKRFGIESSY
RLSEQAIATTTTRDSTVRLLYVVVSLLLQNTWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPADRPPDDRFHR
Blast result :
Comments
References
1] Pfeifer, F., Boyer, H.W., and Betlach, M.C. (1985) J. Bacteriol. 164, 414-420.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., and Blaseio, U. (1989) J. Bacteriol. 171, 5135-5140.
4] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925
5] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Pfeifer, F., and Blaseio, U. (1989) J. Bacteriol. 171, 5135-5140.
4] Pfeifer, F., and Blaseio, U. (1990) Nucl. Acids Res. 18, 6921-6925
5] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.