ISLmo10
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP007583.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes XYSN |
DNA section
IS Length : 1522 bp
Ends
IR Length : 22/27
IRL : CAGACTGTAGACAAAGTGAGTTATCATTTTATCTACAGTCTTTTTTGCTT
IRR : CAGACTGTAGAAAAACGGAAGTTCTCAAAGGTTAAACAATGAGAACTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGAACTATATAAGAA | AAACCGTAAGCGATTGTATTATCGCTTACGGTTT | TTTATTATTTTCTTCT | 34 |
CCGAGTATTTAAAATGCAAA | AGACAATATATTATTGTCT | TTTTTTAGTACTTTTAAATT | 19 |
GATACACCGAAAAAATAAAA | AAACGAGCTTTGGGAAACTACTTCCTAAAGCTCGTTT | TTTCTATGCTTTTTTAAAAT | 37 |
CTTTAATTTTTTTCAAAAAA | AAGCTAGCTACATCGAATGTAACTAGCTT | TTTTATCTTAATTTTCTTCA | 29 |
TTCATCCGATAAATAAAAAA | AGAGTCCAGAATATCTGGACTCT | TTTTTATTTGCCTAAACCTC | 23 |
GTAGTTTCTAAACAATAAAA | AGAAGACCCAATTAATGGTCTTCT | TTTCTTATAGAATAATTTTT | 24 |
DNA sequence
CAGACTGTAGACAAAGTGAGTTATCATTTTATCTACAGTCTTTTTTGCTTTATAATAATGGTAAGGCTTACATAAAATGACGAGGTGATAAAAATGCTAT
CAAAACATCAACAACAAGCACGAAATCAATTAGTAGCTATTTCTTTAGATGATTTGGTCCCAGAGGACCATTTAGTAAGAAAAGTAGATAATGTGATTAA
CTTTGACTTTATCTATCCATTGGTAGAACAAACTTATTCTCATACTGGAAGACCTAGTGTAGATCCGGTAGTCCTCATAAAGTTAGTACTCATTCAATAT
CTTTTTGGTATTCGTTCCATGCGCCAAACCATTAAGGAAGTAGAAACGAATATGGCTTATCGCTGGTTTTTAGGGTATGATTTCAATCAGAAAATTCCCC
ATTTTTCTACTTTCGGTAAAAACTATGTTCGACGTTTTGCGGAAACAGATGTATTCGAACAGATTTTTTATCGCATTTTAAAACAAGCAATAGATGCTGG
TTTAGTAGAACCTGAAGTCGCTTTTGTAGATTCTACACATGTCAAAGCGAATGCGAATAAACATAAATTTCATAAAAAAGTAATTCGAAAAGAAACACGC
GTTTATCAAGAAGTACTTGAAGAAGAAATTAATGTAAGTCGAGTTGCCGAAGGAAAAAAGCCTTTCGCCCGGAAAGAGAGTCAGGAGGAAAAAGAAATTA
AAATAAGTAATACGGATCCCGAAAGTGGCTACTATGTCAAAGGAGAACGGGAAAAACAATTTGCTTATTCTTTCCATACGGCTTGTGACACCAATGGTTT
TATTCTAGGTTCTATTATTACTCCGGGTAACATTCATGATAGTCAACAATTGATTCCGCTTATTGAAAAATTAAAAAATACGCTTTCGACCCCTTCGGTG
GTGGTTGCGGATGCTGGTTACAAGACACCCATTATTGCCAAGTATCTTTGGAGTCAAGGAATAGAAGCGGTGCTTCCTTATACTAGACCAAAAGGAAAAG
AAGGATTATTTTCAAAACGTCAATTTCTCTATGATCACTATTTAGACAGTTATATTTGTCCGAATGACACATTACTATCTTATGTTCGAACTACTAGAGA
AGGCTATCGTCTTTATAAATCTAATTCACTTCACTGTAACAGTTGTCCCTTGTTAAAGAATTGCACTCAAAATAAACAAAAAGAAAAAACGATGTTACGA
CATATTTGGGAACCTTACTTAGAAGTATCGGAGGAACTGCGCTTCACAGAACGGCATAAAAAATGGTATAAACGCAGAAAAGAAACCATCGAAAGATGTT
TTGCGGATGCCAAAGAAAAGCATGGTATGAGATGGACTACTTATCGCGGACTTGCGAAAGTATCTATTCAAGCGATGCTTACTTTTGCAGCCATGAACTT
GAAAAAGATGGCTAACTGGCTATGGAAAAAAGGCAATGCCTTTTTATTTTTTGCTTTTAAACAGGAAAAAACGGAAGTTCTCATTGTTTAACCTTTGAGA
ACTTCCGTTTTTCTACAGTCTG
CAAAACATCAACAACAAGCACGAAATCAATTAGTAGCTATTTCTTTAGATGATTTGGTCCCAGAGGACCATTTAGTAAGAAAAGTAGATAATGTGATTAA
CTTTGACTTTATCTATCCATTGGTAGAACAAACTTATTCTCATACTGGAAGACCTAGTGTAGATCCGGTAGTCCTCATAAAGTTAGTACTCATTCAATAT
CTTTTTGGTATTCGTTCCATGCGCCAAACCATTAAGGAAGTAGAAACGAATATGGCTTATCGCTGGTTTTTAGGGTATGATTTCAATCAGAAAATTCCCC
ATTTTTCTACTTTCGGTAAAAACTATGTTCGACGTTTTGCGGAAACAGATGTATTCGAACAGATTTTTTATCGCATTTTAAAACAAGCAATAGATGCTGG
TTTAGTAGAACCTGAAGTCGCTTTTGTAGATTCTACACATGTCAAAGCGAATGCGAATAAACATAAATTTCATAAAAAAGTAATTCGAAAAGAAACACGC
GTTTATCAAGAAGTACTTGAAGAAGAAATTAATGTAAGTCGAGTTGCCGAAGGAAAAAAGCCTTTCGCCCGGAAAGAGAGTCAGGAGGAAAAAGAAATTA
AAATAAGTAATACGGATCCCGAAAGTGGCTACTATGTCAAAGGAGAACGGGAAAAACAATTTGCTTATTCTTTCCATACGGCTTGTGACACCAATGGTTT
TATTCTAGGTTCTATTATTACTCCGGGTAACATTCATGATAGTCAACAATTGATTCCGCTTATTGAAAAATTAAAAAATACGCTTTCGACCCCTTCGGTG
GTGGTTGCGGATGCTGGTTACAAGACACCCATTATTGCCAAGTATCTTTGGAGTCAAGGAATAGAAGCGGTGCTTCCTTATACTAGACCAAAAGGAAAAG
AAGGATTATTTTCAAAACGTCAATTTCTCTATGATCACTATTTAGACAGTTATATTTGTCCGAATGACACATTACTATCTTATGTTCGAACTACTAGAGA
AGGCTATCGTCTTTATAAATCTAATTCACTTCACTGTAACAGTTGTCCCTTGTTAAAGAATTGCACTCAAAATAAACAAAAAGAAAAAACGATGTTACGA
CATATTTGGGAACCTTACTTAGAAGTATCGGAGGAACTGCGCTTCACAGAACGGCATAAAAAATGGTATAAACGCAGAAAAGAAACCATCGAAAGATGTT
TTGCGGATGCCAAAGAAAAGCATGGTATGAGATGGACTACTTATCGCGGACTTGCGAAAGTATCTATTCAAGCGATGCTTACTTTTGCAGCCATGAACTT
GAAAAAGATGGCTAACTGGCTATGGAAAAAAGGCAATGCCTTTTTATTTTTTGCTTTTAAACAGGAAAAAACGGAAGTTCTCATTGTTTAACCTTTGAGA
ACTTCCGTTTTTCTACAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1398 bp | 465 aa | 94 | 1491 | + | No |
Chemistry : DDE
ORF sequence :
MLSKHQQQARNQLVAISLDDLVPEDHLVRKVDNVINFDFIYPLVEQTYSHTGRPSVDPVVLIKLVLIQYLFGIRSMRQTIKEVETNMAYRWFLGYDFNQK
IPHFSTFGKNYVRRFAETDVFEQIFYRILKQAIDAGLVEPEVAFVDSTHVKANANKHKFHKKVIRKETRVYQEVLEEEINVSRVAEGKKPFARKESQEEK
EIKISNTDPESGYYVKGEREKQFAYSFHTACDTNGFILGSIITPGNIHDSQQLIPLIEKLKNTLSTPSVVVADAGYKTPIIAKYLWSQGIEAVLPYTRPK
GKEGLFSKRQFLYDHYLDSYICPNDTLLSYVRTTREGYRLYKSNSLHCNSCPLLKNCTQNKQKEKTMLRHIWEPYLEVSEELRFTERHKKWYKRRKETIE
RCFADAKEKHGMRWTTYRGLAKVSIQAMLTFAAMNLKKMANWLWKKGNAFLFFAFKQEKTEVLIV
IPHFSTFGKNYVRRFAETDVFEQIFYRILKQAIDAGLVEPEVAFVDSTHVKANANKHKFHKKVIRKETRVYQEVLEEEINVSRVAEGKKPFARKESQEEK
EIKISNTDPESGYYVKGEREKQFAYSFHTACDTNGFILGSIITPGNIHDSQQLIPLIEKLKNTLSTPSVVVADAGYKTPIIAKYLWSQGIEAVLPYTRPK
GKEGLFSKRQFLYDHYLDSYICPNDTLLSYVRTTREGYRLYKSNSLHCNSCPLLKNCTQNKQKEKTMLRHIWEPYLEVSEELRFTERHKKWYKRRKETIE
RCFADAKEKHGMRWTTYRGLAKVSIQAMLTFAAMNLKKMANWLWKKGNAFLFFAFKQEKTEVLIV
Blast result :
Comments
ISLmo10 is 78% aa similar to ISBpu1.
ISLmo10 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN, where it is present in multiple copies.
Ends based on empty insertion sites in other strains.
ISLmo10 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN, where it is present in multiple copies.
Ends based on empty insertion sites in other strains.
References
1] Chmielowska, C. and Bartosik, D. (2018) Direct submission.
2] Yin Y, Yao H, Doijad S, et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun. 2019;10(1):4283. doi:10.1038/s41467-019-12072-1
2] Yin Y, Yao H, Doijad S, et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun. 2019;10(1):4283. doi:10.1038/s41467-019-12072-1