ISLmo10

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP007583.1 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes XYSN
DNA section
IS Length : 1522 bp

Ends


IR Length : 22/27

IRL : CAGACTGTAGACAAAGTGAGTTATCATTTTATCTACAGTCTTTTTTGCTT
IRR : CAGACTGTAGAAAAACGGAAGTTCTCAAAGGTTAAACAATGAGAACTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
TAGAACTATATAAGAAAAACCGTAAGCGATTGTATTATCGCTTACGGTTTTTTATTATTTTCTTCT34
CCGAGTATTTAAAATGCAAAAGACAATATATTATTGTCTTTTTTTAGTACTTTTAAATT19
GATACACCGAAAAAATAAAAAAACGAGCTTTGGGAAACTACTTCCTAAAGCTCGTTTTTTCTATGCTTTTTTAAAAT37
CTTTAATTTTTTTCAAAAAAAAGCTAGCTACATCGAATGTAACTAGCTTTTTTATCTTAATTTTCTTCA29
TTCATCCGATAAATAAAAAAAGAGTCCAGAATATCTGGACTCTTTTTTATTTGCCTAAACCTC23
GTAGTTTCTAAACAATAAAAAGAAGACCCAATTAATGGTCTTCTTTTCTTATAGAATAATTTTT24

DNA sequence

CAGACTGTAGACAAAGTGAGTTATCATTTTATCTACAGTCTTTTTTGCTTTATAATAATGGTAAGGCTTACATAAAATGACGAGGTGATAAAAATGCTAT
CAAAACATCAACAACAAGCACGAAATCAATTAGTAGCTATTTCTTTAGATGATTTGGTCCCAGAGGACCATTTAGTAAGAAAAGTAGATAATGTGATTAA
CTTTGACTTTATCTATCCATTGGTAGAACAAACTTATTCTCATACTGGAAGACCTAGTGTAGATCCGGTAGTCCTCATAAAGTTAGTACTCATTCAATAT
CTTTTTGGTATTCGTTCCATGCGCCAAACCATTAAGGAAGTAGAAACGAATATGGCTTATCGCTGGTTTTTAGGGTATGATTTCAATCAGAAAATTCCCC
ATTTTTCTACTTTCGGTAAAAACTATGTTCGACGTTTTGCGGAAACAGATGTATTCGAACAGATTTTTTATCGCATTTTAAAACAAGCAATAGATGCTGG
TTTAGTAGAACCTGAAGTCGCTTTTGTAGATTCTACACATGTCAAAGCGAATGCGAATAAACATAAATTTCATAAAAAAGTAATTCGAAAAGAAACACGC
GTTTATCAAGAAGTACTTGAAGAAGAAATTAATGTAAGTCGAGTTGCCGAAGGAAAAAAGCCTTTCGCCCGGAAAGAGAGTCAGGAGGAAAAAGAAATTA
AAATAAGTAATACGGATCCCGAAAGTGGCTACTATGTCAAAGGAGAACGGGAAAAACAATTTGCTTATTCTTTCCATACGGCTTGTGACACCAATGGTTT
TATTCTAGGTTCTATTATTACTCCGGGTAACATTCATGATAGTCAACAATTGATTCCGCTTATTGAAAAATTAAAAAATACGCTTTCGACCCCTTCGGTG
GTGGTTGCGGATGCTGGTTACAAGACACCCATTATTGCCAAGTATCTTTGGAGTCAAGGAATAGAAGCGGTGCTTCCTTATACTAGACCAAAAGGAAAAG
AAGGATTATTTTCAAAACGTCAATTTCTCTATGATCACTATTTAGACAGTTATATTTGTCCGAATGACACATTACTATCTTATGTTCGAACTACTAGAGA
AGGCTATCGTCTTTATAAATCTAATTCACTTCACTGTAACAGTTGTCCCTTGTTAAAGAATTGCACTCAAAATAAACAAAAAGAAAAAACGATGTTACGA
CATATTTGGGAACCTTACTTAGAAGTATCGGAGGAACTGCGCTTCACAGAACGGCATAAAAAATGGTATAAACGCAGAAAAGAAACCATCGAAAGATGTT
TTGCGGATGCCAAAGAAAAGCATGGTATGAGATGGACTACTTATCGCGGACTTGCGAAAGTATCTATTCAAGCGATGCTTACTTTTGCAGCCATGAACTT
GAAAAAGATGGCTAACTGGCTATGGAAAAAAGGCAATGCCTTTTTATTTTTTGCTTTTAAACAGGAAAAAACGGAAGTTCTCATTGTTTAACCTTTGAGA
ACTTCCGTTTTTCTACAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1398 bp465 aa941491+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSKHQQQARNQLVAISLDDLVPEDHLVRKVDNVINFDFIYPLVEQTYSHTGRPSVDPVVLIKLVLIQYLFGIRSMRQTIKEVETNMAYRWFLGYDFNQK
IPHFSTFGKNYVRRFAETDVFEQIFYRILKQAIDAGLVEPEVAFVDSTHVKANANKHKFHKKVIRKETRVYQEVLEEEINVSRVAEGKKPFARKESQEEK
EIKISNTDPESGYYVKGEREKQFAYSFHTACDTNGFILGSIITPGNIHDSQQLIPLIEKLKNTLSTPSVVVADAGYKTPIIAKYLWSQGIEAVLPYTRPK
GKEGLFSKRQFLYDHYLDSYICPNDTLLSYVRTTREGYRLYKSNSLHCNSCPLLKNCTQNKQKEKTMLRHIWEPYLEVSEELRFTERHKKWYKRRKETIE
RCFADAKEKHGMRWTTYRGLAKVSIQAMLTFAAMNLKKMANWLWKKGNAFLFFAFKQEKTEVLIV

 

Blast result :
Comments
ISLmo10 is 78% aa similar to ISBpu1.
ISLmo10 was identified by in silico sequence analysis of Listeria monocytogenes strain XYSN, where it is present in multiple copies.
Ends based on empty insertion sites in other strains.
References
1] Chmielowska, C. and Bartosik, D. (2018) Direct submission.
2] Yin Y, Yao H, Doijad S, et al. A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. Nat Commun. 2019;10(1):4283. doi:10.1038/s41467-019-12072-1