ISPa122
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 2358 bp
Ends
IR Length : 17/24
IRL : GTAAGCGCCCGGTGAACACACCTTCTGAACTCCAGCATTAAGGGCGATGG
IRR : GTAAGCGTATGGGGAATACGTCTTGCGCAGGTCAGCCGGGCATCCATTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CC | GG | 0 |
DNA sequence
GTAAGCGCCCGGTGAACACACCTTCTGAACTCCAGCATTAAGGGCGATGGTGTCCGCCTATTTTTTAGCGGACGCGATCGCCCTTATCGCCAGGATTTCC
ATGCGCCAACGAAGCTCTTATCCAAAAACCTTCAAGGCCCAGGTTGTTCAGGAGTGCCTGCAACCGGGGGCCACTGTTTCCGGCGTCGCCATCAGCCATG
GCATCAACGCCAACGTGATCCGCAAGTGGCTGCCGATTTACCGCGACCGACACCCTACCGGCCTGCCGACATTCGTGCCGGTACAAGCGACTGCCAGGCG
GCCGGCTGAAGAAGTGGCGGTGATCACATTGCCGCTGGGTGACACATCCATCACGGTCAAATGGCCCGTCTCAGATCCGGACGGCTGCGCGCGCTTCATC
CGAAGCCTCTCGCAATGATCCGCATCGACGCGATCTGGCTCGCCACCCAGCCCATGGACATGCGCGCCGGCACTGACACCGCGCTGGCCCGCGTGGTTGC
GGTATTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAACCGCCGCGCCAATCGGATGAAAGTGCTCGTGCACGATGGTGTAGGTATTTGGCTT
GCTGCACGGCGGTTGAACCAAGGGAAATTCCACTGGCCCGGCATTCATCACGGCCTGGAAGTCGAACTCGACGCCGAACAGCTTCACGCCCTGGTGCTCG
GTTTGCCATGGCGACGGGTTGGTTCCGGCGGCACAATTACATTGCTTTGAACTTCGCTCTTTAGCTGTGGCAGATGGGCTGCTTTGGTAAAATCCACGGT
ATGAGTTCCTCGCCCAATCTCGACCAAATGACGCCCGATCAGCTGCGCGCACTCGCTGCACAGTTGCTGTCGAAGGTCGACACCATGGGCAGAAAGATCC
ATCGCGATGAGACGATCATCGAGCAGCTCACTCACGAGATCGCCATCCTCAAACGGCACAAATACGCCAAGCGCAGCGAGCAAATCAGCCCTGCGCAAGG
CAGCTTGCTGGATGACCTGCTCAATACCGACCTTGAGGCTATCGAAGCAGAACTGAACGCGCTGCGTCCCGCCCCGACGTCGGACCAAACCCGCCAAAAG
CCCAAGCGCGCACCTCTGCCGCCGCAGTTCCCACGTACCGTCATTCACCACGAGCCGCAGAGCACCGAATGCGTCTGCGGCTGCCAGCTTCAGCGCATCG
GTGAAGACGTCAGCGAGAAGCTGGATTACACCCCGGGTGTGTTTACCGTCGAGCAACATGTGCGTGGCAAGTGGGCCTGCCATCAGTGTGAAACCCTGAT
CCAGGCGCCCGTGCCGGCCCAGGTGATCGACAAGGGTATCCCTACCGCCGGCCTGCTGGCTCACGTGATGGTGGCCAAGTTCGCCGATCACCTGCCACTG
TACCGGCAGGAAAAAATCTTTGGCCGGGCTGGTCTAGCGATTCCCCGCTCGACGCTGGCTCAGTGGGCGGGCCAGACCGGCGTACAGCTCCAGCCACTGG
TGGATGCGTTGCGCAAAACGGTGCTGGCTCAGAGCGTCGTACACGCGGATGAAACACCGGTTCAAATGCTGGCACCGGGCGAGAAGAAAACACACCGGGC
TTACGTCTGGGCCTACTGCACCACACCATTCTCGGCACTGAAGGCCGTGGTCTACGACTTCAGCCCCAGCCGTGCAGGCGAACATGCGCGTAACTTCCTG
GGCACCTGGAACGGCAAGCTGGTCTGCGATGACTTCTCGGGCTACAAGGCTGGCTTCGAGCAGGGCATCACCGAAATCGGCTGCATGGCTCATGCACGGC
GCAAGTTCTTCGACCTGCATGTGGCGAACAAAAGCCAACTGGCCGAACAGGCGCTGCACTCTATCGCCGGGCTGTACGAAGTCGAGCGGCAGGCCAAGGA
AATGAGCGATGAAGGTCGATGGCGATTACGCCAGGAGCTAGCGGTGCCTATCGCAGGCAAGTTGCATGAATGGATGTTTGCTCAGCGCGACCTTGTGCCC
GACGGGTCAGCTACGGCCAAGGCCTTGGATTACAGCTTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGTGCTGTGCCCATCGACAACAATG
CGGTCGAGAACCAGATCAGGCCGTGGGCGCTCGGGCGCGCGAACTGGCTCTTCGCTGGATCACTGCGCAGCGGCAAGCGGGCGGCGGCGATCATGAGCCT
GATCCAGTCGGCGCGGATGAATGGGCATGATCCGTACGCGTACCTCAAGGATGTACTGACGCGGTTGCCGACGCAGAAGGCCAGTGAGATCGAGCACCTG
TTGCCGCATCAATGGATGCCCGGCTGACCTGCGCAAGACGTATTCCCCATACGCTTAC
ATGCGCCAACGAAGCTCTTATCCAAAAACCTTCAAGGCCCAGGTTGTTCAGGAGTGCCTGCAACCGGGGGCCACTGTTTCCGGCGTCGCCATCAGCCATG
GCATCAACGCCAACGTGATCCGCAAGTGGCTGCCGATTTACCGCGACCGACACCCTACCGGCCTGCCGACATTCGTGCCGGTACAAGCGACTGCCAGGCG
GCCGGCTGAAGAAGTGGCGGTGATCACATTGCCGCTGGGTGACACATCCATCACGGTCAAATGGCCCGTCTCAGATCCGGACGGCTGCGCGCGCTTCATC
CGAAGCCTCTCGCAATGATCCGCATCGACGCGATCTGGCTCGCCACCCAGCCCATGGACATGCGCGCCGGCACTGACACCGCGCTGGCCCGCGTGGTTGC
GGTATTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAACCGCCGCGCCAATCGGATGAAAGTGCTCGTGCACGATGGTGTAGGTATTTGGCTT
GCTGCACGGCGGTTGAACCAAGGGAAATTCCACTGGCCCGGCATTCATCACGGCCTGGAAGTCGAACTCGACGCCGAACAGCTTCACGCCCTGGTGCTCG
GTTTGCCATGGCGACGGGTTGGTTCCGGCGGCACAATTACATTGCTTTGAACTTCGCTCTTTAGCTGTGGCAGATGGGCTGCTTTGGTAAAATCCACGGT
ATGAGTTCCTCGCCCAATCTCGACCAAATGACGCCCGATCAGCTGCGCGCACTCGCTGCACAGTTGCTGTCGAAGGTCGACACCATGGGCAGAAAGATCC
ATCGCGATGAGACGATCATCGAGCAGCTCACTCACGAGATCGCCATCCTCAAACGGCACAAATACGCCAAGCGCAGCGAGCAAATCAGCCCTGCGCAAGG
CAGCTTGCTGGATGACCTGCTCAATACCGACCTTGAGGCTATCGAAGCAGAACTGAACGCGCTGCGTCCCGCCCCGACGTCGGACCAAACCCGCCAAAAG
CCCAAGCGCGCACCTCTGCCGCCGCAGTTCCCACGTACCGTCATTCACCACGAGCCGCAGAGCACCGAATGCGTCTGCGGCTGCCAGCTTCAGCGCATCG
GTGAAGACGTCAGCGAGAAGCTGGATTACACCCCGGGTGTGTTTACCGTCGAGCAACATGTGCGTGGCAAGTGGGCCTGCCATCAGTGTGAAACCCTGAT
CCAGGCGCCCGTGCCGGCCCAGGTGATCGACAAGGGTATCCCTACCGCCGGCCTGCTGGCTCACGTGATGGTGGCCAAGTTCGCCGATCACCTGCCACTG
TACCGGCAGGAAAAAATCTTTGGCCGGGCTGGTCTAGCGATTCCCCGCTCGACGCTGGCTCAGTGGGCGGGCCAGACCGGCGTACAGCTCCAGCCACTGG
TGGATGCGTTGCGCAAAACGGTGCTGGCTCAGAGCGTCGTACACGCGGATGAAACACCGGTTCAAATGCTGGCACCGGGCGAGAAGAAAACACACCGGGC
TTACGTCTGGGCCTACTGCACCACACCATTCTCGGCACTGAAGGCCGTGGTCTACGACTTCAGCCCCAGCCGTGCAGGCGAACATGCGCGTAACTTCCTG
GGCACCTGGAACGGCAAGCTGGTCTGCGATGACTTCTCGGGCTACAAGGCTGGCTTCGAGCAGGGCATCACCGAAATCGGCTGCATGGCTCATGCACGGC
GCAAGTTCTTCGACCTGCATGTGGCGAACAAAAGCCAACTGGCCGAACAGGCGCTGCACTCTATCGCCGGGCTGTACGAAGTCGAGCGGCAGGCCAAGGA
AATGAGCGATGAAGGTCGATGGCGATTACGCCAGGAGCTAGCGGTGCCTATCGCAGGCAAGTTGCATGAATGGATGTTTGCTCAGCGCGACCTTGTGCCC
GACGGGTCAGCTACGGCCAAGGCCTTGGATTACAGCTTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGTGCTGTGCCCATCGACAACAATG
CGGTCGAGAACCAGATCAGGCCGTGGGCGCTCGGGCGCGCGAACTGGCTCTTCGCTGGATCACTGCGCAGCGGCAAGCGGGCGGCGGCGATCATGAGCCT
GATCCAGTCGGCGCGGATGAATGGGCATGATCCGTACGCGTACCTCAAGGATGTACTGACGCGGTTGCCGACGCAGAAGGCCAGTGAGATCGAGCACCTG
TTGCCGCATCAATGGATGCCCGGCTGACCTGCGCAAGACGTATTCCCCATACGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
650 bp | 105 aa | 101 | 750 | + | No |
AG : IS66 TnpA
ORF sequence :
MRQRSSYPKTFKAQVVQECLQPGATVSGVAISHGINANVIRKWLPIYRDRHPTGLPTFVPVQATARRPAEEVAVITLPLGDTSITVKWPVSDPDGCARFI
RSLSQ
RSLSQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
336 bp | 129 aa | 415 | 750 | + | No |
AG : IS66 TnpB
ORF sequence :
MARLRSGRLRALHPKPLAMIRIDAIWLATQPMDMRAGTDTALARVVAVFGAAKPHCAYLFANRRANRMKVLVHDGVGIWLAARRLNQGKFHWPGIHHGLE
VELDAEQLHALVLGLPWRRVGSGGTITLL
VELDAEQLHALVLGLPWRRVGSGGTITLL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1527 bp | 508 aa | 801 | 2327 | + | No |
Chemistry : DDE
ORF sequence :
MSSSPNLDQMTPDQLRALAAQLLSKVDTMGRKIHRDETIIEQLTHEIAILKRHKYAKRSEQISPAQGSLLDDLLNTDLEAIEAELNALRPAPTSDQTRQK
PKRAPLPPQFPRTVIHHEPQSTECVCGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGKWACHQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADHLPL
YRQEKIFGRAGLAIPRSTLAQWAGQTGVQLQPLVDALRKTVLAQSVVHADETPVQMLAPGEKKTHRAYVWAYCTTPFSALKAVVYDFSPSRAGEHARNFL
GTWNGKLVCDDFSGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSIAGLYEVERQAKEMSDEGRWRLRQELAVPIAGKLHEWMFAQRDLVP
DGSATAKALDYSLKRWVALTRYLDDGAVPIDNNAVENQIRPWALGRANWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQKASEIEHL
LPHQWMPG
PKRAPLPPQFPRTVIHHEPQSTECVCGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGKWACHQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADHLPL
YRQEKIFGRAGLAIPRSTLAQWAGQTGVQLQPLVDALRKTVLAQSVVHADETPVQMLAPGEKKTHRAYVWAYCTTPFSALKAVVYDFSPSRAGEHARNFL
GTWNGKLVCDDFSGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSIAGLYEVERQAKEMSDEGRWRLRQELAVPIAGKLHEWMFAQRDLVP
DGSATAKALDYSLKRWVALTRYLDDGAVPIDNNAVENQIRPWALGRANWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQKASEIEHL
LPHQWMPG
Blast result :
Comments
ISPa122 is 94% aa (transposase) similar to ISPpu30.
References
1] Dongsheng Zhou (2020) Direct submission.