ISHgi8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii |
DNA section
IS Length : 1673 bp
Ends
Left end : CTGGAATTAGGCGCTAAGTCCCCTTCCGCAAGGAGCAACGCAGGGAGCGAAGCGACTGAGTAGCGCAGTAGGGAGGGGATACAGCGTTCACGAGAGCAAA II struct. : No
Right end : GGATACGTCCGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGCAACCACGAT | TTAA | TCGAACAGCGAC | TCAC |
DNA sequence
CTGGAATTAGGCGCTAAGTCCCCTTCCGCAAGGAGCAACGCAGGGAGCGAAGCGACTGAGTAGCGCAGTAGGGAGGGGATACAGCGTTCACGAGAGCAAA
GCTCTCGTGCGCAAACGAGACGCGAGGCGTCTCGTCAACGCCGCACGGTTCTCAAACACGTTCACTGCCCGGCCCACAGGCCCACCGCTACTTTTATGTC
TATCCAAAGTATATACATCGGTGATGGATAGGTTTGAAATCGAAGGCGAAGAAGTCCTCGACGGGACGGCAAAACCGTCGGGGAATAGTGCCCACGTCAT
CGTTCCCAAACGCTGGCGCGGAGCCGACGTGAAAGTCGTCCGCGTCTCCGAACCCGATTCAGACGAGTAAGATGAAGTACAACTACAAGTATCGACTCAA
CCCGACAGAAGCCCTCACTGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAACTGTACAATCACGTCCTCTACAAACTCAACGAGGCAGACGACATT
CCTGCTCGCTACGAGGTGCAGGGGCGACTTCCCGACCTCAAATCGTGGTGGGACGGCCTCGGAAATGTTCACTCGAAGGTGTTACAGATGGTCGTCAAGC
GGGTCTACGACAACCTCTCCACGCTCAAAGCGCAGAAGGAGAACGGGCGTGCTGTGGGGATGCTCAAGTGGAAGCCCCCTCGGGAGTATCGGTCGCTCAC
CTACAATCAGTCCGGCTTCGAACTCAAGAATACGAGTGGTTGGCCTGTCCTGTGGTTGAGCAAAATCGGTGAGATTCCGATTCACCTCCACCGAGACATT
CCCGAGAACGCGACCATCAAACAGGTTACGGTCAAGCAAGAACCCACGGGCGAGTGGTATGCTACGTTCGGTATCGACGTGGACGAAGCAACACCGGAGA
AACCTGAGAAACCAGAGCAAGTCGTTGGTATCGACGTGGGGATTCTCAAGTACGCCCACGATACTGAAGGGTACGCCATTGAGAGTCCCGACTTCAGCGA
GGAACGTGAACGACTCGAACGCGCACAACGCGACTTCTCGCGGAAACAGCACGGGTCTGCGAATTGGGAAAAACAACGTCGGGTTGTTGCCGAATGCTAC
GCCGACCTGAAGCGCAAGCGGCGAGACTTCTTGCACAAACTCTCGAACTACTACGCGACCAAGTACGACCTGGTGGCCGTTGAGGATTTGGACGCGAAGG
GGCTGGTCGAACTCCCGGGCAACTCTCGTAATCGAGCGGGAGCGGCGTGGGGGACGTTTCTGCGGATGCTCGAATACAAGTGCGAGCGCGAAGGAACGCA
CTTCGTCGCGGTTGACCCGAAAGATACGACGAAGGAGTGTGCGTCCTGCAGTGTCAAGACGGACAAACCGCTGTGGGTTCGTGAGCACTCGTGTCCTTCG
TGTGGGTTCGAGGCGGATAGGGACGCGAATGCGGCGTGGAATATTCTTTCTCGCGGTCTCGAAGAAGTAGGAGTGGTTCACTCCGAATCAACGTCCTCAG
AAACGCGATGCGTTTCTGATGGGCGAACGAGAGCTTCGCTCTCGTTAACGCCTGTGGAGACTGCGCTCCCTGTGGATACGTCCGTATCTGCAAAGCGCGT
CGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGTAGTTCAC
GCTCTCGTGCGCAAACGAGACGCGAGGCGTCTCGTCAACGCCGCACGGTTCTCAAACACGTTCACTGCCCGGCCCACAGGCCCACCGCTACTTTTATGTC
TATCCAAAGTATATACATCGGTGATGGATAGGTTTGAAATCGAAGGCGAAGAAGTCCTCGACGGGACGGCAAAACCGTCGGGGAATAGTGCCCACGTCAT
CGTTCCCAAACGCTGGCGCGGAGCCGACGTGAAAGTCGTCCGCGTCTCCGAACCCGATTCAGACGAGTAAGATGAAGTACAACTACAAGTATCGACTCAA
CCCGACAGAAGCCCTCACTGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAACTGTACAATCACGTCCTCTACAAACTCAACGAGGCAGACGACATT
CCTGCTCGCTACGAGGTGCAGGGGCGACTTCCCGACCTCAAATCGTGGTGGGACGGCCTCGGAAATGTTCACTCGAAGGTGTTACAGATGGTCGTCAAGC
GGGTCTACGACAACCTCTCCACGCTCAAAGCGCAGAAGGAGAACGGGCGTGCTGTGGGGATGCTCAAGTGGAAGCCCCCTCGGGAGTATCGGTCGCTCAC
CTACAATCAGTCCGGCTTCGAACTCAAGAATACGAGTGGTTGGCCTGTCCTGTGGTTGAGCAAAATCGGTGAGATTCCGATTCACCTCCACCGAGACATT
CCCGAGAACGCGACCATCAAACAGGTTACGGTCAAGCAAGAACCCACGGGCGAGTGGTATGCTACGTTCGGTATCGACGTGGACGAAGCAACACCGGAGA
AACCTGAGAAACCAGAGCAAGTCGTTGGTATCGACGTGGGGATTCTCAAGTACGCCCACGATACTGAAGGGTACGCCATTGAGAGTCCCGACTTCAGCGA
GGAACGTGAACGACTCGAACGCGCACAACGCGACTTCTCGCGGAAACAGCACGGGTCTGCGAATTGGGAAAAACAACGTCGGGTTGTTGCCGAATGCTAC
GCCGACCTGAAGCGCAAGCGGCGAGACTTCTTGCACAAACTCTCGAACTACTACGCGACCAAGTACGACCTGGTGGCCGTTGAGGATTTGGACGCGAAGG
GGCTGGTCGAACTCCCGGGCAACTCTCGTAATCGAGCGGGAGCGGCGTGGGGGACGTTTCTGCGGATGCTCGAATACAAGTGCGAGCGCGAAGGAACGCA
CTTCGTCGCGGTTGACCCGAAAGATACGACGAAGGAGTGTGCGTCCTGCAGTGTCAAGACGGACAAACCGCTGTGGGTTCGTGAGCACTCGTGTCCTTCG
TGTGGGTTCGAGGCGGATAGGGACGCGAATGCGGCGTGGAATATTCTTTCTCGCGGTCTCGAAGAAGTAGGAGTGGTTCACTCCGAATCAACGTCCTCAG
AAACGCGATGCGTTTCTGATGGGCGAACGAGAGCTTCGCTCTCGTTAACGCCTGTGGAGACTGCGCTCCCTGTGGATACGTCCGTATCTGCAAAGCGCGT
CGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 372 | 1658 | + | No |
AG : TnpB
ORF sequence :
MKYNYKYRLNPTEALTETLLHHVDTCRQLYNHVLYKLNEADDIPARYEVQGRLPDLKSWWDGLGNVHSKVLQMVVKRVYDNLSTLKAQKENGRAVGMLKW
KPPREYRSLTYNQSGFELKNTSGWPVLWLSKIGEIPIHLHRDIPENATIKQVTVKQEPTGEWYATFGIDVDEATPEKPEKPEQVVGIDVGILKYAHDTEG
YAIESPDFSEERERLERAQRDFSRKQHGSANWEKQRRVVAECYADLKRKRRDFLHKLSNYYATKYDLVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVAVDPKDTTKECASCSVKTDKPLWVREHSCPSCGFEADRDANAAWNILSRGLEEVGVVHSESTSSETRCVSDGRTRASLSLTPVETALP
VDTSVSAKRVVEAGSPTLKERTASAVSE
KPPREYRSLTYNQSGFELKNTSGWPVLWLSKIGEIPIHLHRDIPENATIKQVTVKQEPTGEWYATFGIDVDEATPEKPEKPEQVVGIDVGILKYAHDTEG
YAIESPDFSEERERLERAQRDFSRKQHGSANWEKQRRVVAECYADLKRKRRDFLHKLSNYYATKYDLVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVAVDPKDTTKECASCSVKTDKPLWVREHSCPSCGFEADRDANAAWNILSRGLEEVGVVHSESTSSETRCVSDGRTRASLSLTPVETALP
VDTSVSAKRVVEAGSPTLKERTASAVSE
Blast result :
Comments
ISHgi8 is 95% aa similar to ISHalo1.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)