ISHgi8

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii
DNA section
IS Length : 1673 bp

Ends


Left end : CTGGAATTAGGCGCTAAGTCCCCTTCCGCAAGGAGCAACGCAGGGAGCGAAGCGACTGAGTAGCGCAGTAGGGAGGGGATACAGCGTTCACGAGAGCAAA II struct. : No
Right end : GGATACGTCCGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGCAACCACGATTTAATCGAACAGCGACTCAC

DNA sequence

CTGGAATTAGGCGCTAAGTCCCCTTCCGCAAGGAGCAACGCAGGGAGCGAAGCGACTGAGTAGCGCAGTAGGGAGGGGATACAGCGTTCACGAGAGCAAA
GCTCTCGTGCGCAAACGAGACGCGAGGCGTCTCGTCAACGCCGCACGGTTCTCAAACACGTTCACTGCCCGGCCCACAGGCCCACCGCTACTTTTATGTC
TATCCAAAGTATATACATCGGTGATGGATAGGTTTGAAATCGAAGGCGAAGAAGTCCTCGACGGGACGGCAAAACCGTCGGGGAATAGTGCCCACGTCAT
CGTTCCCAAACGCTGGCGCGGAGCCGACGTGAAAGTCGTCCGCGTCTCCGAACCCGATTCAGACGAGTAAGATGAAGTACAACTACAAGTATCGACTCAA
CCCGACAGAAGCCCTCACTGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAACTGTACAATCACGTCCTCTACAAACTCAACGAGGCAGACGACATT
CCTGCTCGCTACGAGGTGCAGGGGCGACTTCCCGACCTCAAATCGTGGTGGGACGGCCTCGGAAATGTTCACTCGAAGGTGTTACAGATGGTCGTCAAGC
GGGTCTACGACAACCTCTCCACGCTCAAAGCGCAGAAGGAGAACGGGCGTGCTGTGGGGATGCTCAAGTGGAAGCCCCCTCGGGAGTATCGGTCGCTCAC
CTACAATCAGTCCGGCTTCGAACTCAAGAATACGAGTGGTTGGCCTGTCCTGTGGTTGAGCAAAATCGGTGAGATTCCGATTCACCTCCACCGAGACATT
CCCGAGAACGCGACCATCAAACAGGTTACGGTCAAGCAAGAACCCACGGGCGAGTGGTATGCTACGTTCGGTATCGACGTGGACGAAGCAACACCGGAGA
AACCTGAGAAACCAGAGCAAGTCGTTGGTATCGACGTGGGGATTCTCAAGTACGCCCACGATACTGAAGGGTACGCCATTGAGAGTCCCGACTTCAGCGA
GGAACGTGAACGACTCGAACGCGCACAACGCGACTTCTCGCGGAAACAGCACGGGTCTGCGAATTGGGAAAAACAACGTCGGGTTGTTGCCGAATGCTAC
GCCGACCTGAAGCGCAAGCGGCGAGACTTCTTGCACAAACTCTCGAACTACTACGCGACCAAGTACGACCTGGTGGCCGTTGAGGATTTGGACGCGAAGG
GGCTGGTCGAACTCCCGGGCAACTCTCGTAATCGAGCGGGAGCGGCGTGGGGGACGTTTCTGCGGATGCTCGAATACAAGTGCGAGCGCGAAGGAACGCA
CTTCGTCGCGGTTGACCCGAAAGATACGACGAAGGAGTGTGCGTCCTGCAGTGTCAAGACGGACAAACCGCTGTGGGTTCGTGAGCACTCGTGTCCTTCG
TGTGGGTTCGAGGCGGATAGGGACGCGAATGCGGCGTGGAATATTCTTTCTCGCGGTCTCGAAGAAGTAGGAGTGGTTCACTCCGAATCAACGTCCTCAG
AAACGCGATGCGTTTCTGATGGGCGAACGAGAGCTTCGCTCTCGTTAACGCCTGTGGAGACTGCGCTCCCTGTGGATACGTCCGTATCTGCAAAGCGCGT
CGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa3721658+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKYNYKYRLNPTEALTETLLHHVDTCRQLYNHVLYKLNEADDIPARYEVQGRLPDLKSWWDGLGNVHSKVLQMVVKRVYDNLSTLKAQKENGRAVGMLKW
KPPREYRSLTYNQSGFELKNTSGWPVLWLSKIGEIPIHLHRDIPENATIKQVTVKQEPTGEWYATFGIDVDEATPEKPEKPEQVVGIDVGILKYAHDTEG
YAIESPDFSEERERLERAQRDFSRKQHGSANWEKQRRVVAECYADLKRKRRDFLHKLSNYYATKYDLVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVAVDPKDTTKECASCSVKTDKPLWVREHSCPSCGFEADRDANAAWNILSRGLEEVGVVHSESTSSETRCVSDGRTRASLSLTPVETALP
VDTSVSAKRVVEAGSPTLKERTASAVSE

 

Blast result :
Comments
ISHgi8 is 95% aa similar to ISHalo1.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)