ISHgi5

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 890 bp

Ends


IR Length : 16/25

IRL : GGCTCTGTTGAAATCCTCAGAGAGTTACAGGTTCGCCTCGTAGTCTGACC
IRR : GCTTCCATTTAACCCTTCAGAGCGTCTTGTCGATATTGTGAGTGAGACAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCGAACGATTGGGAGAGGTAATC0

DNA sequence

GGCTCTGTTGAAATCCTCAGAGAGTTACAGGTTCGCCTCGTAGTCTGACCGGATGGAAGCCCTCCCGAAGTCGCGGTTACTCAGGTTCGTTGAGCAAGCG
ATACACTTGGCTCGGCGAGCCGTCGCTCGTTACTCCTCGAAATTCTCGAAACGGCGGTACACACTTCATCAGCACATCGTCTTGCTCTGTCTCAAAGTTC
GGAAAAATACGACGTACCGAACGCTTCTCGACGAACTCATCGAGATGCCCCGGATTCGAAGCGCCATCGGCCTTGAGGAACTCCCGTCTCCCTCGACGCT
GTGTAAAGCGTTCAACCGGCTTGATATGGCGGTTTGGCGCGTTCTGCTCAACCTCTCGGTCACACTCCTCCCGACCAATGGTGTCGTCGGAATCGACGCC
TCCGGTTTTGACCGCAGTCACGCCTCGAAGCACTACACGAAACGAACGAAGCTGACGATTCAGCAGTTGAAAGTTACACTTCTCGTGGACACGAGAGTGA
ACGCAATCATCGACTTACACGTGACGACGACACGAAAACACGACTCACAAATCGCACCGTCGCTCATCAAGCGGAATACCGAACAAGTAGCGATTCTCCT
CGGTGACAAGGGATATGACGACCAAAAGATTCGCGCGTTAGCCCGTGGAGATGGTGTTCGTCCGGTCATCAAACATCGGGAATTTTCGCCGCTCCACAAG
GCGTGGAACTCACGGTTGGACGCCGACCTCTACGGTCAACGGAGTCAGAATGAAACGGTAAACTCTCGCATTAAACGGAAATATGGCGCATTCGTCCGCT
CACGACGTTGGTGGAAGCAATTCCGTGAACTCGTTGTCGGCTGTCTCACTCACAATATCGACAAGACGCTCTGAAGGGTTAAATGGAAGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa53874+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEALPKSRLLRFVEQAIHLARRAVARYSSKFSKRRYTLHQHIVLLCLKVRKNTTYRTLLDELIEMPRIRSAIGLEELPSPSTLCKAFNRLDMAVWRVLLN
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRVNAIIDLHVTTTRKHDSQIAPSLIKRNTEQVAILLGDKGYDDQKIRALARGD
GVRPVIKHREFSPLHKAWNSRLDADLYGQRSQNETVNSRIKRKYGAFVRSRRWWKQFRELVVGCLTHNIDKTL

 

Blast result :
Comments
ISHgi5 is 96% aa similar to ISHla7.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)