ISHgi5
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 890 bp
Ends
IR Length : 16/25
IRL : GGCTCTGTTGAAATCCTCAGAGAGTTACAGGTTCGCCTCGTAGTCTGACC
IRR : GCTTCCATTTAACCCTTCAGAGCGTCTTGTCGATATTGTGAGTGAGACAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCGAACGATTG | GGAGAGGTAATC | 0 |
DNA sequence
GGCTCTGTTGAAATCCTCAGAGAGTTACAGGTTCGCCTCGTAGTCTGACCGGATGGAAGCCCTCCCGAAGTCGCGGTTACTCAGGTTCGTTGAGCAAGCG
ATACACTTGGCTCGGCGAGCCGTCGCTCGTTACTCCTCGAAATTCTCGAAACGGCGGTACACACTTCATCAGCACATCGTCTTGCTCTGTCTCAAAGTTC
GGAAAAATACGACGTACCGAACGCTTCTCGACGAACTCATCGAGATGCCCCGGATTCGAAGCGCCATCGGCCTTGAGGAACTCCCGTCTCCCTCGACGCT
GTGTAAAGCGTTCAACCGGCTTGATATGGCGGTTTGGCGCGTTCTGCTCAACCTCTCGGTCACACTCCTCCCGACCAATGGTGTCGTCGGAATCGACGCC
TCCGGTTTTGACCGCAGTCACGCCTCGAAGCACTACACGAAACGAACGAAGCTGACGATTCAGCAGTTGAAAGTTACACTTCTCGTGGACACGAGAGTGA
ACGCAATCATCGACTTACACGTGACGACGACACGAAAACACGACTCACAAATCGCACCGTCGCTCATCAAGCGGAATACCGAACAAGTAGCGATTCTCCT
CGGTGACAAGGGATATGACGACCAAAAGATTCGCGCGTTAGCCCGTGGAGATGGTGTTCGTCCGGTCATCAAACATCGGGAATTTTCGCCGCTCCACAAG
GCGTGGAACTCACGGTTGGACGCCGACCTCTACGGTCAACGGAGTCAGAATGAAACGGTAAACTCTCGCATTAAACGGAAATATGGCGCATTCGTCCGCT
CACGACGTTGGTGGAAGCAATTCCGTGAACTCGTTGTCGGCTGTCTCACTCACAATATCGACAAGACGCTCTGAAGGGTTAAATGGAAGC
ATACACTTGGCTCGGCGAGCCGTCGCTCGTTACTCCTCGAAATTCTCGAAACGGCGGTACACACTTCATCAGCACATCGTCTTGCTCTGTCTCAAAGTTC
GGAAAAATACGACGTACCGAACGCTTCTCGACGAACTCATCGAGATGCCCCGGATTCGAAGCGCCATCGGCCTTGAGGAACTCCCGTCTCCCTCGACGCT
GTGTAAAGCGTTCAACCGGCTTGATATGGCGGTTTGGCGCGTTCTGCTCAACCTCTCGGTCACACTCCTCCCGACCAATGGTGTCGTCGGAATCGACGCC
TCCGGTTTTGACCGCAGTCACGCCTCGAAGCACTACACGAAACGAACGAAGCTGACGATTCAGCAGTTGAAAGTTACACTTCTCGTGGACACGAGAGTGA
ACGCAATCATCGACTTACACGTGACGACGACACGAAAACACGACTCACAAATCGCACCGTCGCTCATCAAGCGGAATACCGAACAAGTAGCGATTCTCCT
CGGTGACAAGGGATATGACGACCAAAAGATTCGCGCGTTAGCCCGTGGAGATGGTGTTCGTCCGGTCATCAAACATCGGGAATTTTCGCCGCTCCACAAG
GCGTGGAACTCACGGTTGGACGCCGACCTCTACGGTCAACGGAGTCAGAATGAAACGGTAAACTCTCGCATTAAACGGAAATATGGCGCATTCGTCCGCT
CACGACGTTGGTGGAAGCAATTCCGTGAACTCGTTGTCGGCTGTCTCACTCACAATATCGACAAGACGCTCTGAAGGGTTAAATGGAAGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 53 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MEALPKSRLLRFVEQAIHLARRAVARYSSKFSKRRYTLHQHIVLLCLKVRKNTTYRTLLDELIEMPRIRSAIGLEELPSPSTLCKAFNRLDMAVWRVLLN
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRVNAIIDLHVTTTRKHDSQIAPSLIKRNTEQVAILLGDKGYDDQKIRALARGD
GVRPVIKHREFSPLHKAWNSRLDADLYGQRSQNETVNSRIKRKYGAFVRSRRWWKQFRELVVGCLTHNIDKTL
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRVNAIIDLHVTTTRKHDSQIAPSLIKRNTEQVAILLGDKGYDDQKIRALARGD
GVRPVIKHREFSPLHKAWNSRLDADLYGQRSQNETVNSRIKRKYGAFVRSRRWWKQFRELVVGCLTHNIDKTL
Blast result :
Comments
ISHgi5 is 96% aa similar to ISHla7.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)