ISHgi4

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii
Haloferax gibbonsii plasmid pHGLR1
DNA section
IS Length : 926 bp

Ends


IR Length : 21/23

IRL : GGCTCTGTAGTTTCGCTAGACGGAGACGCCGCGACTGCGTTATTGCCGTA
IRR : GGCTCTGTAGTTTCGGTATACGGCGCTGGATTTCACGGATATCTCACGCT

Insertion site


Left flankDirect repeatRight flankDR Length
ACGGGTCTCTTTGTTTTTCGATAGCCGCTCGA8
TTGATGAGAATCCTTTTATTAATTGGATGCTA8

DNA sequence

GGCTCTGTAGTTTCGCTAGACGGAGACGCCGCGACTGCGTTATTGCCGTAGAAAGCGAAGAGACAGAATGGTTTGATATCGGAATTCCGTCTCCTCACGC
GTGCTACGGCTGCGAAGGCTAAATCAGTTGTCGCTAATCCGGACGAACCCGCCGACCCCGAAGGGGGTCGCGGGTTCGCCGAGTGGGCGATGCTCACGCT
GCATGCACTTCGCATCGAGCTGGGCAAATCCTACCGCGTCGCGGTGGATTTGCTCAGCGAGATGCCCGGCGTCCTCGAAGAGATCGGCCTCACACGGCTG
CCTCATTACACCGTTCTCCGTACGTGGTTTGAACGGATTCCGACGAAGACCTGGCGTGCGTTCCTCGACGCGTCGGTCGAGGAACGCACTGGCCACGCCG
CCATCGATTCGACCGGCTTCGACCGTGATCAGCCCAGCCGTCACTACGCCAACCGCACTAACTACCGCGTTCGAGCGCTGAAAGTCACCGCTCTCGTGGA
TGTCGAAACGCTGTACATCACCGACATCCACTCGACAACCTCGAAGAAGCATGATGCGAAGATCGGCCCGCAGGTCGCCCGCCGGAACGCGGGCGACCTG
CGGAGCCTTGCAGCTGATCGCGGATACGACGCGAAAGCCTTCCGCGACGAACTCCGCGAAAATGGTGTTCGACCGCTAATCAAACACCGCATCATGAACC
CACTCGATCACGCCCACAACGCCCGCATGGACAGTGATCGGTACCACCAGCGATCCATGTCTGAAACCGTCTTCTCGTCAATCAAGCGCACGCTCGGCGC
TGCCGTGCGTGCGCGAAGCTGGTGGCTGGAGTTCCGTGAAATGCTTCTCAAAGCTACCGTCTACAACCTCCGCCGGAGCGTGAGATATCCGTGAAATCCA
GCGCCGTATACCGAAACTACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa73894+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISEFRLLTRATAAKAKSVVANPDEPADPEGGRGFAEWAMLTLHALRIELGKSYRVAVDLLSEMPGVLEEIGLTRLPHYTVLRTWFERIPTKTWRAFLDA
SVEERTGHAAIDSTGFDRDQPSRHYANRTNYRVRALKVTALVDVETLYITDIHSTTSKKHDAKIGPQVARRNAGDLRSLAADRGYDAKAFRDELRENGVR
PLIKHRIMNPLDHAHNARMDSDRYHQRSMSETVFSSIKRTLGAAVRARSWWLEFREMLLKATVYNLRRSVRYP

 

Blast result :
Comments
ISHgi4 is 94% aa similar to ISH39.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T.
(in preparation)