ISHgi4
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax gibbonsii | Haloferax gibbonsii Haloferax gibbonsii plasmid pHGLR1 |
DNA section
IS Length : 926 bp
Ends
IR Length : 21/23
IRL : GGCTCTGTAGTTTCGCTAGACGGAGACGCCGCGACTGCGTTATTGCCGTA
IRR : GGCTCTGTAGTTTCGGTATACGGCGCTGGATTTCACGGATATCTCACGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGGGTCTCTTT | GTTTTTCG | ATAGCCGCTCGA | 8 |
TTGATGAGAATC | CTTTTATT | AATTGGATGCTA | 8 |
DNA sequence
GGCTCTGTAGTTTCGCTAGACGGAGACGCCGCGACTGCGTTATTGCCGTAGAAAGCGAAGAGACAGAATGGTTTGATATCGGAATTCCGTCTCCTCACGC
GTGCTACGGCTGCGAAGGCTAAATCAGTTGTCGCTAATCCGGACGAACCCGCCGACCCCGAAGGGGGTCGCGGGTTCGCCGAGTGGGCGATGCTCACGCT
GCATGCACTTCGCATCGAGCTGGGCAAATCCTACCGCGTCGCGGTGGATTTGCTCAGCGAGATGCCCGGCGTCCTCGAAGAGATCGGCCTCACACGGCTG
CCTCATTACACCGTTCTCCGTACGTGGTTTGAACGGATTCCGACGAAGACCTGGCGTGCGTTCCTCGACGCGTCGGTCGAGGAACGCACTGGCCACGCCG
CCATCGATTCGACCGGCTTCGACCGTGATCAGCCCAGCCGTCACTACGCCAACCGCACTAACTACCGCGTTCGAGCGCTGAAAGTCACCGCTCTCGTGGA
TGTCGAAACGCTGTACATCACCGACATCCACTCGACAACCTCGAAGAAGCATGATGCGAAGATCGGCCCGCAGGTCGCCCGCCGGAACGCGGGCGACCTG
CGGAGCCTTGCAGCTGATCGCGGATACGACGCGAAAGCCTTCCGCGACGAACTCCGCGAAAATGGTGTTCGACCGCTAATCAAACACCGCATCATGAACC
CACTCGATCACGCCCACAACGCCCGCATGGACAGTGATCGGTACCACCAGCGATCCATGTCTGAAACCGTCTTCTCGTCAATCAAGCGCACGCTCGGCGC
TGCCGTGCGTGCGCGAAGCTGGTGGCTGGAGTTCCGTGAAATGCTTCTCAAAGCTACCGTCTACAACCTCCGCCGGAGCGTGAGATATCCGTGAAATCCA
GCGCCGTATACCGAAACTACAGAGCC
GTGCTACGGCTGCGAAGGCTAAATCAGTTGTCGCTAATCCGGACGAACCCGCCGACCCCGAAGGGGGTCGCGGGTTCGCCGAGTGGGCGATGCTCACGCT
GCATGCACTTCGCATCGAGCTGGGCAAATCCTACCGCGTCGCGGTGGATTTGCTCAGCGAGATGCCCGGCGTCCTCGAAGAGATCGGCCTCACACGGCTG
CCTCATTACACCGTTCTCCGTACGTGGTTTGAACGGATTCCGACGAAGACCTGGCGTGCGTTCCTCGACGCGTCGGTCGAGGAACGCACTGGCCACGCCG
CCATCGATTCGACCGGCTTCGACCGTGATCAGCCCAGCCGTCACTACGCCAACCGCACTAACTACCGCGTTCGAGCGCTGAAAGTCACCGCTCTCGTGGA
TGTCGAAACGCTGTACATCACCGACATCCACTCGACAACCTCGAAGAAGCATGATGCGAAGATCGGCCCGCAGGTCGCCCGCCGGAACGCGGGCGACCTG
CGGAGCCTTGCAGCTGATCGCGGATACGACGCGAAAGCCTTCCGCGACGAACTCCGCGAAAATGGTGTTCGACCGCTAATCAAACACCGCATCATGAACC
CACTCGATCACGCCCACAACGCCCGCATGGACAGTGATCGGTACCACCAGCGATCCATGTCTGAAACCGTCTTCTCGTCAATCAAGCGCACGCTCGGCGC
TGCCGTGCGTGCGCGAAGCTGGTGGCTGGAGTTCCGTGAAATGCTTCTCAAAGCTACCGTCTACAACCTCCGCCGGAGCGTGAGATATCCGTGAAATCCA
GCGCCGTATACCGAAACTACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 73 | 894 | + | No |
Chemistry : DDE
ORF sequence :
MISEFRLLTRATAAKAKSVVANPDEPADPEGGRGFAEWAMLTLHALRIELGKSYRVAVDLLSEMPGVLEEIGLTRLPHYTVLRTWFERIPTKTWRAFLDA
SVEERTGHAAIDSTGFDRDQPSRHYANRTNYRVRALKVTALVDVETLYITDIHSTTSKKHDAKIGPQVARRNAGDLRSLAADRGYDAKAFRDELRENGVR
PLIKHRIMNPLDHAHNARMDSDRYHQRSMSETVFSSIKRTLGAAVRARSWWLEFREMLLKATVYNLRRSVRYP
SVEERTGHAAIDSTGFDRDQPSRHYANRTNYRVRALKVTALVDVETLYITDIHSTTSKKHDAKIGPQVARRNAGDLRSLAADRGYDAKAFRDELRENGVR
PLIKHRIMNPLDHAHNARMDSDRYHQRSMSETVFSSIKRTLGAAVRARSWWLEFREMLLKATVYNLRRSVRYP
Blast result :
Comments
ISHgi4 is 94% aa similar to ISH39.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T.
(in preparation)
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T.
(in preparation)