ISHgi3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011947 ND Haloferax gibbonsii
Haloferax gibbonsii ARA6
DNA section
IS Length : 1427 bp

Ends


Left end : TTATGACTGCAAGGCAGATTCCACAACTTAGGCGCGGGAGAAAGCTGGCAACCCACTACACAAACTATCCTCGATAGCAGGTCGATATCCTCACGAAATC II struct. : No
Right end : CGGGATGCTGAACGTGAACGGTGAGTATTCGCCTACTGCATGAGCAGTTAGAACGGGATCCCACGCTGAATGACACGTCTTGGAGGACGTGGTAGCTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGTCGGGCCAGTTGGTCGGATTCAAACCAACCCCGCCCACGTACTTAC

DNA sequence

TTATGACTGCAAGGCAGATTCCACAACTTAGGCGCGGGAGAAAGCTGGCAACCCACTACACAAACTATCCTCGATAGCAGGTCGATATCCTCACGAAATC
CGAACTGACATAAATACATTCGTCTACATATGAAATACAGATGGTGGACGACTCAAGCACTCGAACCGTACCCATCAAACTCGATGTGGGCGAGAGTGCC
GCTGATCTTCTCCACCAGACAATCGACCACTTCCTTGACGCCGCTAACTACGTTGTAGACGTAGCGTGGGAACCTGACTGGAAAATCACCAGTAAACAGA
AACTTCACGACCTTACCTACTACGACGTTCGAGACGATTCGCCGCTCCCGTCCAACCTCGTGCAAGCCGCACGAAACCGCGCCGCCGAAGCCGTCAAAGG
CGTCGTTGAACGCTGGAAGGCAGACAAGAATGCCTCGAAGCCACACTTCACATCACGGTTCGCTAGCTACGACGCCCGAACCTTCACCGTGAACAACGAC
CACGCCACACTCGCCACTATCGATGGGCGAGTGACCGCAGAGTTCCTCCTACCCGACGAAAAGCGTGACACGCCACACTCGGAGTACTTGTTCAACGACG
ACTACGACGTAAAAGGAGCGACACTCCATTACGATGAGGTTGAGGACTGTTTCTACCTTCATGTGCGGACAAAGCCCGCCGTGGAGAACGATGACACCGA
CACAGCCGATGCCAAGCACGTCTCCGTCCTTGGTGTTGACCTCGGTATCACAAACATCGCAACCACCTCAACTGGCCAATTCTGGAGCGGCAGCGAACTC
AACCACTGGCACCGAGAGTACGAGAAGCGTCGTAGTTCGTTTCAACAGACTGGGACTCGATGGGCACACGAGAATGTCCAGCGAGTCGGTCGAAAGCAAA
CCAGGCGCTTCGAGCAGGTGCTCCATACTATCTCAAACGAACTCGTAGAGGTTGCTCTGGAGAACGAGTGTACGCACATCGTGTTCGAGCAACTCAAAGG
ACTCCGGGAACGCCTACCGCACACGAAGGCAGTTCACAAGTGGGCGTTCCACCGTTTGTTCGAGTACGTTACGTACAAGGCCGAGTCGGAGGGGCTTGTG
GTAAAACAGATCAATCCGGCGTACACGAGTCAGCGTTGCTCGAAGTGTGGGTTTACCCACAAGGATAATCGTCCACGCAAGAGCGGTCAGGACGAGTTCA
GTTGTCTGAAATGCGGCTACGATGTTCACGCGGATTACAACGCAGCGAAGAATATCGGTCTGAAGTATCTCCGTGACCAGCAAAAGTCTGGCCGTGGAGG
CGCACCCGTAGGCGTGCGCTTGAACAGCGGGATGCTGAACGTGAACGGTGAGTATTCGCCTACTGCATGAGCAGTTAGAACGGGATCCCACGCTGAATGA
CACGTCTTGGAGGACGTGGTAGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa1411370+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MVDDSSTRTVPIKLDVGESAADLLHQTIDHFLDAANYVVDVAWEPDWKITSKQKLHDLTYHATLATIDGRVTAEFLLPDEKRDTPHSEYLFNDDYDVKGA
TLHYDEVEDCFYLHVRTKPAVENDDTDTADAKHVSVLGVDLGITNIATTSTGQFWSGSELNHWHREYEKRRSSFQQTGTRWAHENVQRVGRKQTRRFEQV
LHTISNELVEVALENECTHIVFEQLKGLRERLPHTKAVHKWAFHRLFEYVTYKAESEGLVVKQINPAYTSQRCSKCGFTHKDNRPRKSGQDEFSCLKCGY
DVHADYNAAKNIGLKYLRDQQKSGRGGAPVGVRLNSGMLNVNGEYSPTA

 

Blast result :
Comments
ISHgi3 is 76% aa similar to ISHvo24.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2]Pinto, L.H., D'Alincourt Carvalho-Assef, A.P., Vieira, R.P., Clementino, M.M., Albano, R.M. (2015) J. Biotechnol. 212:69-70.