ISHgi3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011947 | ND | Haloferax gibbonsii | Haloferax gibbonsii ARA6 |
DNA section
IS Length : 1427 bp
Ends
Left end : TTATGACTGCAAGGCAGATTCCACAACTTAGGCGCGGGAGAAAGCTGGCAACCCACTACACAAACTATCCTCGATAGCAGGTCGATATCCTCACGAAATC II struct. : No
Right end : CGGGATGCTGAACGTGAACGGTGAGTATTCGCCTACTGCATGAGCAGTTAGAACGGGATCCCACGCTGAATGACACGTCTTGGAGGACGTGGTAGCTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGTCGGGCCAGTTGGTCGGA | TTCA | AACCAACCCCGCCCACGTAC | TTAC |
DNA sequence
TTATGACTGCAAGGCAGATTCCACAACTTAGGCGCGGGAGAAAGCTGGCAACCCACTACACAAACTATCCTCGATAGCAGGTCGATATCCTCACGAAATC
CGAACTGACATAAATACATTCGTCTACATATGAAATACAGATGGTGGACGACTCAAGCACTCGAACCGTACCCATCAAACTCGATGTGGGCGAGAGTGCC
GCTGATCTTCTCCACCAGACAATCGACCACTTCCTTGACGCCGCTAACTACGTTGTAGACGTAGCGTGGGAACCTGACTGGAAAATCACCAGTAAACAGA
AACTTCACGACCTTACCTACTACGACGTTCGAGACGATTCGCCGCTCCCGTCCAACCTCGTGCAAGCCGCACGAAACCGCGCCGCCGAAGCCGTCAAAGG
CGTCGTTGAACGCTGGAAGGCAGACAAGAATGCCTCGAAGCCACACTTCACATCACGGTTCGCTAGCTACGACGCCCGAACCTTCACCGTGAACAACGAC
CACGCCACACTCGCCACTATCGATGGGCGAGTGACCGCAGAGTTCCTCCTACCCGACGAAAAGCGTGACACGCCACACTCGGAGTACTTGTTCAACGACG
ACTACGACGTAAAAGGAGCGACACTCCATTACGATGAGGTTGAGGACTGTTTCTACCTTCATGTGCGGACAAAGCCCGCCGTGGAGAACGATGACACCGA
CACAGCCGATGCCAAGCACGTCTCCGTCCTTGGTGTTGACCTCGGTATCACAAACATCGCAACCACCTCAACTGGCCAATTCTGGAGCGGCAGCGAACTC
AACCACTGGCACCGAGAGTACGAGAAGCGTCGTAGTTCGTTTCAACAGACTGGGACTCGATGGGCACACGAGAATGTCCAGCGAGTCGGTCGAAAGCAAA
CCAGGCGCTTCGAGCAGGTGCTCCATACTATCTCAAACGAACTCGTAGAGGTTGCTCTGGAGAACGAGTGTACGCACATCGTGTTCGAGCAACTCAAAGG
ACTCCGGGAACGCCTACCGCACACGAAGGCAGTTCACAAGTGGGCGTTCCACCGTTTGTTCGAGTACGTTACGTACAAGGCCGAGTCGGAGGGGCTTGTG
GTAAAACAGATCAATCCGGCGTACACGAGTCAGCGTTGCTCGAAGTGTGGGTTTACCCACAAGGATAATCGTCCACGCAAGAGCGGTCAGGACGAGTTCA
GTTGTCTGAAATGCGGCTACGATGTTCACGCGGATTACAACGCAGCGAAGAATATCGGTCTGAAGTATCTCCGTGACCAGCAAAAGTCTGGCCGTGGAGG
CGCACCCGTAGGCGTGCGCTTGAACAGCGGGATGCTGAACGTGAACGGTGAGTATTCGCCTACTGCATGAGCAGTTAGAACGGGATCCCACGCTGAATGA
CACGTCTTGGAGGACGTGGTAGCTTAC
CGAACTGACATAAATACATTCGTCTACATATGAAATACAGATGGTGGACGACTCAAGCACTCGAACCGTACCCATCAAACTCGATGTGGGCGAGAGTGCC
GCTGATCTTCTCCACCAGACAATCGACCACTTCCTTGACGCCGCTAACTACGTTGTAGACGTAGCGTGGGAACCTGACTGGAAAATCACCAGTAAACAGA
AACTTCACGACCTTACCTACTACGACGTTCGAGACGATTCGCCGCTCCCGTCCAACCTCGTGCAAGCCGCACGAAACCGCGCCGCCGAAGCCGTCAAAGG
CGTCGTTGAACGCTGGAAGGCAGACAAGAATGCCTCGAAGCCACACTTCACATCACGGTTCGCTAGCTACGACGCCCGAACCTTCACCGTGAACAACGAC
CACGCCACACTCGCCACTATCGATGGGCGAGTGACCGCAGAGTTCCTCCTACCCGACGAAAAGCGTGACACGCCACACTCGGAGTACTTGTTCAACGACG
ACTACGACGTAAAAGGAGCGACACTCCATTACGATGAGGTTGAGGACTGTTTCTACCTTCATGTGCGGACAAAGCCCGCCGTGGAGAACGATGACACCGA
CACAGCCGATGCCAAGCACGTCTCCGTCCTTGGTGTTGACCTCGGTATCACAAACATCGCAACCACCTCAACTGGCCAATTCTGGAGCGGCAGCGAACTC
AACCACTGGCACCGAGAGTACGAGAAGCGTCGTAGTTCGTTTCAACAGACTGGGACTCGATGGGCACACGAGAATGTCCAGCGAGTCGGTCGAAAGCAAA
CCAGGCGCTTCGAGCAGGTGCTCCATACTATCTCAAACGAACTCGTAGAGGTTGCTCTGGAGAACGAGTGTACGCACATCGTGTTCGAGCAACTCAAAGG
ACTCCGGGAACGCCTACCGCACACGAAGGCAGTTCACAAGTGGGCGTTCCACCGTTTGTTCGAGTACGTTACGTACAAGGCCGAGTCGGAGGGGCTTGTG
GTAAAACAGATCAATCCGGCGTACACGAGTCAGCGTTGCTCGAAGTGTGGGTTTACCCACAAGGATAATCGTCCACGCAAGAGCGGTCAGGACGAGTTCA
GTTGTCTGAAATGCGGCTACGATGTTCACGCGGATTACAACGCAGCGAAGAATATCGGTCTGAAGTATCTCCGTGACCAGCAAAAGTCTGGCCGTGGAGG
CGCACCCGTAGGCGTGCGCTTGAACAGCGGGATGCTGAACGTGAACGGTGAGTATTCGCCTACTGCATGAGCAGTTAGAACGGGATCCCACGCTGAATGA
CACGTCTTGGAGGACGTGGTAGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 141 | 1370 | + | No |
AG : TnpB
ORF sequence :
MVDDSSTRTVPIKLDVGESAADLLHQTIDHFLDAANYVVDVAWEPDWKITSKQKLHDLTYHATLATIDGRVTAEFLLPDEKRDTPHSEYLFNDDYDVKGA
TLHYDEVEDCFYLHVRTKPAVENDDTDTADAKHVSVLGVDLGITNIATTSTGQFWSGSELNHWHREYEKRRSSFQQTGTRWAHENVQRVGRKQTRRFEQV
LHTISNELVEVALENECTHIVFEQLKGLRERLPHTKAVHKWAFHRLFEYVTYKAESEGLVVKQINPAYTSQRCSKCGFTHKDNRPRKSGQDEFSCLKCGY
DVHADYNAAKNIGLKYLRDQQKSGRGGAPVGVRLNSGMLNVNGEYSPTA
TLHYDEVEDCFYLHVRTKPAVENDDTDTADAKHVSVLGVDLGITNIATTSTGQFWSGSELNHWHREYEKRRSSFQQTGTRWAHENVQRVGRKQTRRFEQV
LHTISNELVEVALENECTHIVFEQLKGLRERLPHTKAVHKWAFHRLFEYVTYKAESEGLVVKQINPAYTSQRCSKCGFTHKDNRPRKSGQDEFSCLKCGY
DVHADYNAAKNIGLKYLRDQQKSGRGGAPVGVRLNSGMLNVNGEYSPTA
Blast result :
Comments
ISHgi3 is 76% aa similar to ISHvo24.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2]Pinto, L.H., D'Alincourt Carvalho-Assef, A.P., Vieira, R.P., Clementino, M.M., Albano, R.M. (2015) J. Biotechnol. 212:69-70.
2]Pinto, L.H., D'Alincourt Carvalho-Assef, A.P., Vieira, R.P., Clementino, M.M., Albano, R.M. (2015) J. Biotechnol. 212:69-70.