ISHgi2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011947 ND Haloferax gibbonsii
Haloferax gibbonsii ARA6
DNA section
IS Length : 1474 bp

Ends


Left end : GGAGAGTCAAGGAGAAAGCCCCGCCCTTTAGGGCGGGGATGAATCCGGCATAATCCTCCACAGACCACCGTTCAAACACTCGGATGGATATTCCACGCTG II struct. : Yes
Right end : ACACTGGTGCGTTCGCACCTCAAGAACAGGTCACGTCGTAAACCACAATATCCCAACTGCGGTGGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTCCACAGCCAAGAGAACGATTACTTGTCCGCTCTGGACTCTGGTCAA

DNA sequence

GGAGAGTCAAGGAGAAAGCCCCGCCCTTTAGGGCGGGGATGAATCCGGCATAATCCTCCACAGACCACCGTTCAAACACTCGGATGGATATTCCACGCTG
CGTAATCCATACCTTCAAGTAATATTCTCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTACACTGCTTCCATCAGGAACCAGCAACAG
GTGTCTGACGACCTCGATTCGCTCGGGTTCGCAGCCTCGAAGCTCTGGAACGTCGGACGGTGGGTCTGCGACCGCGTGTGGTCGGAGATAGGCCACATTC
CCGGTCACAACGAACTCACCTCGTACCTCAAGTCGTACGAACGATACGATGACCTGCATTCTCAGTCAAGTCAGCGAGTCCTTCAAGAACTCGCTGAAGC
GTTCACCGGCTGGTACGGCAAACGACGCAACGGAGACACGAAAGCGAACCCACCGAAGTACCGCAAACACGGCGACGAACACCCGCGAAGCACGGTCACG
TTCAAAGCCGCTGGCTTCAAACTCGACACCCAGTACAACCGAGTCCGACTCTCCAAAGGCTCGAATCTCAAAGAGTATTGGTCGGACTTCATCCTCTGTG
AATACAAGACAAGACCTGACGTTGACCTCTCCACCGTCGAGAGCGTTCAACAAGTTCGGGCCGTCTGGACAGGTGACGAGTGGGAGCTACACTTCGTGTG
CAAGGTCGAAATAGAGGTTGCTGAAGCCCCCGGTGAGAAGACCGTGGGTGTTGACCTCGGCATCAACAACTTCGCCGCACTCGCCTACGAAGACGGCCAC
AGCGAACTGTATCCACTGAACTGCTTAAAGCAGGACGACTACTACTTCAGCAAACGACTCGCTCGGTGTGACGATTCAGACTCCGACCAAGCGACACGGT
TGAATCAGAAGAAGTCGGCTCGCCGCACCCACTACTTCCACACTCTCTCCAAACACATCGTCCAGCGATGTGTGGACGAGGAAGCTGGAACGATTGTGGT
GGGCGACCTTTCTGGCATCCGAGAAGATGAGGGGAACGGTGAGTCGAAGAACTGGGGTAAGCACGGCAACCTCGACCTGCACTCATGGGCGTTTGACCGC
TTCATCGACCTCGTTGAATACAAGGCCAAGATGGAAGGCATCACGGTCGAACGAGTGTCTGAGCGAGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGA
AGCGTAAATCGAACCGTGTTGAGCGTGGGTTGTACGTGTGTGATGACTGCGGTGTGGTGGCGAACGCGGATGTAAACGGTGCTGAGAACATTCGACAGAA
AGTATCTCCGAGTCCTTCCGAGGATAGGAGTAACGGCTGGTTGGCACAGCCTTCGACGTTGTTGTTTGACAAGGACACTGGTGCGTTCGCACCTCAAGAA
CAGGTCACGTCGTAAACCACAATATCCCAACTGCGGTGGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1272 bp423 aa1441415+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAKQVVTRTYTASIRNQQQVSDDLDSLGFAASKLWNVGRWVCDRVWSEIGHIPGHNELTSYLKSYERYDDLHSQSSQRVLQELAEAFTGWYGKRRNGDTK
ANPPKYRKHGDEHPRSTVTFKAAGFKLDTQYNRVRLSKGSNLKEYWSDFILCEYKTRPDVDLSTVESVQQVRAVWTGDEWELHFVCKVEIEVAEAPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLARCDDSDSDQATRLNQKKSARRTHYFHTLSKHIVQRCVDEEAGTIVVGDLSGIREDEGNGE
SKNWGKHGNLDLHSWAFDRFIDLVEYKAKMEGITVERVSERDTSKSCSCCGRKRKSNRVERGLYVCDDCGVVANADVNGAENIRQKVSPSPSEDRSNGWL
AQPSTLLFDKDTGAFAPQEQVTS

 

Blast result :
Comments
ISHgi2 is 94% aa similar to ISH39.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2]Pinto, L.H., D'Alincourt Carvalho-Assef, A.P., Vieira, R.P., Clementino, M.M., Albano, R.M. (2015) J. Biotechnol. 212:69-70.