ISHgi2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011947 | ND | Haloferax gibbonsii | Haloferax gibbonsii ARA6 |
DNA section
IS Length : 1474 bp
Ends
Left end : GGAGAGTCAAGGAGAAAGCCCCGCCCTTTAGGGCGGGGATGAATCCGGCATAATCCTCCACAGACCACCGTTCAAACACTCGGATGGATATTCCACGCTG II struct. : Yes
Right end : ACACTGGTGCGTTCGCACCTCAAGAACAGGTCACGTCGTAAACCACAATATCCCAACTGCGGTGGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCCACAGCCAAGAGAACGA | TTAC | TTGTCCGCTCTGGACTCTGG | TCAA |
DNA sequence
GGAGAGTCAAGGAGAAAGCCCCGCCCTTTAGGGCGGGGATGAATCCGGCATAATCCTCCACAGACCACCGTTCAAACACTCGGATGGATATTCCACGCTG
CGTAATCCATACCTTCAAGTAATATTCTCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTACACTGCTTCCATCAGGAACCAGCAACAG
GTGTCTGACGACCTCGATTCGCTCGGGTTCGCAGCCTCGAAGCTCTGGAACGTCGGACGGTGGGTCTGCGACCGCGTGTGGTCGGAGATAGGCCACATTC
CCGGTCACAACGAACTCACCTCGTACCTCAAGTCGTACGAACGATACGATGACCTGCATTCTCAGTCAAGTCAGCGAGTCCTTCAAGAACTCGCTGAAGC
GTTCACCGGCTGGTACGGCAAACGACGCAACGGAGACACGAAAGCGAACCCACCGAAGTACCGCAAACACGGCGACGAACACCCGCGAAGCACGGTCACG
TTCAAAGCCGCTGGCTTCAAACTCGACACCCAGTACAACCGAGTCCGACTCTCCAAAGGCTCGAATCTCAAAGAGTATTGGTCGGACTTCATCCTCTGTG
AATACAAGACAAGACCTGACGTTGACCTCTCCACCGTCGAGAGCGTTCAACAAGTTCGGGCCGTCTGGACAGGTGACGAGTGGGAGCTACACTTCGTGTG
CAAGGTCGAAATAGAGGTTGCTGAAGCCCCCGGTGAGAAGACCGTGGGTGTTGACCTCGGCATCAACAACTTCGCCGCACTCGCCTACGAAGACGGCCAC
AGCGAACTGTATCCACTGAACTGCTTAAAGCAGGACGACTACTACTTCAGCAAACGACTCGCTCGGTGTGACGATTCAGACTCCGACCAAGCGACACGGT
TGAATCAGAAGAAGTCGGCTCGCCGCACCCACTACTTCCACACTCTCTCCAAACACATCGTCCAGCGATGTGTGGACGAGGAAGCTGGAACGATTGTGGT
GGGCGACCTTTCTGGCATCCGAGAAGATGAGGGGAACGGTGAGTCGAAGAACTGGGGTAAGCACGGCAACCTCGACCTGCACTCATGGGCGTTTGACCGC
TTCATCGACCTCGTTGAATACAAGGCCAAGATGGAAGGCATCACGGTCGAACGAGTGTCTGAGCGAGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGA
AGCGTAAATCGAACCGTGTTGAGCGTGGGTTGTACGTGTGTGATGACTGCGGTGTGGTGGCGAACGCGGATGTAAACGGTGCTGAGAACATTCGACAGAA
AGTATCTCCGAGTCCTTCCGAGGATAGGAGTAACGGCTGGTTGGCACAGCCTTCGACGTTGTTGTTTGACAAGGACACTGGTGCGTTCGCACCTCAAGAA
CAGGTCACGTCGTAAACCACAATATCCCAACTGCGGTGGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA
CGTAATCCATACCTTCAAGTAATATTCTCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTACACTGCTTCCATCAGGAACCAGCAACAG
GTGTCTGACGACCTCGATTCGCTCGGGTTCGCAGCCTCGAAGCTCTGGAACGTCGGACGGTGGGTCTGCGACCGCGTGTGGTCGGAGATAGGCCACATTC
CCGGTCACAACGAACTCACCTCGTACCTCAAGTCGTACGAACGATACGATGACCTGCATTCTCAGTCAAGTCAGCGAGTCCTTCAAGAACTCGCTGAAGC
GTTCACCGGCTGGTACGGCAAACGACGCAACGGAGACACGAAAGCGAACCCACCGAAGTACCGCAAACACGGCGACGAACACCCGCGAAGCACGGTCACG
TTCAAAGCCGCTGGCTTCAAACTCGACACCCAGTACAACCGAGTCCGACTCTCCAAAGGCTCGAATCTCAAAGAGTATTGGTCGGACTTCATCCTCTGTG
AATACAAGACAAGACCTGACGTTGACCTCTCCACCGTCGAGAGCGTTCAACAAGTTCGGGCCGTCTGGACAGGTGACGAGTGGGAGCTACACTTCGTGTG
CAAGGTCGAAATAGAGGTTGCTGAAGCCCCCGGTGAGAAGACCGTGGGTGTTGACCTCGGCATCAACAACTTCGCCGCACTCGCCTACGAAGACGGCCAC
AGCGAACTGTATCCACTGAACTGCTTAAAGCAGGACGACTACTACTTCAGCAAACGACTCGCTCGGTGTGACGATTCAGACTCCGACCAAGCGACACGGT
TGAATCAGAAGAAGTCGGCTCGCCGCACCCACTACTTCCACACTCTCTCCAAACACATCGTCCAGCGATGTGTGGACGAGGAAGCTGGAACGATTGTGGT
GGGCGACCTTTCTGGCATCCGAGAAGATGAGGGGAACGGTGAGTCGAAGAACTGGGGTAAGCACGGCAACCTCGACCTGCACTCATGGGCGTTTGACCGC
TTCATCGACCTCGTTGAATACAAGGCCAAGATGGAAGGCATCACGGTCGAACGAGTGTCTGAGCGAGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGA
AGCGTAAATCGAACCGTGTTGAGCGTGGGTTGTACGTGTGTGATGACTGCGGTGTGGTGGCGAACGCGGATGTAAACGGTGCTGAGAACATTCGACAGAA
AGTATCTCCGAGTCCTTCCGAGGATAGGAGTAACGGCTGGTTGGCACAGCCTTCGACGTTGTTGTTTGACAAGGACACTGGTGCGTTCGCACCTCAAGAA
CAGGTCACGTCGTAAACCACAATATCCCAACTGCGGTGGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1272 bp | 423 aa | 144 | 1415 | + | No |
AG : TnpB
ORF sequence :
MAKQVVTRTYTASIRNQQQVSDDLDSLGFAASKLWNVGRWVCDRVWSEIGHIPGHNELTSYLKSYERYDDLHSQSSQRVLQELAEAFTGWYGKRRNGDTK
ANPPKYRKHGDEHPRSTVTFKAAGFKLDTQYNRVRLSKGSNLKEYWSDFILCEYKTRPDVDLSTVESVQQVRAVWTGDEWELHFVCKVEIEVAEAPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLARCDDSDSDQATRLNQKKSARRTHYFHTLSKHIVQRCVDEEAGTIVVGDLSGIREDEGNGE
SKNWGKHGNLDLHSWAFDRFIDLVEYKAKMEGITVERVSERDTSKSCSCCGRKRKSNRVERGLYVCDDCGVVANADVNGAENIRQKVSPSPSEDRSNGWL
AQPSTLLFDKDTGAFAPQEQVTS
ANPPKYRKHGDEHPRSTVTFKAAGFKLDTQYNRVRLSKGSNLKEYWSDFILCEYKTRPDVDLSTVESVQQVRAVWTGDEWELHFVCKVEIEVAEAPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLARCDDSDSDQATRLNQKKSARRTHYFHTLSKHIVQRCVDEEAGTIVVGDLSGIREDEGNGE
SKNWGKHGNLDLHSWAFDRFIDLVEYKAKMEGITVERVSERDTSKSCSCCGRKRKSNRVERGLYVCDDCGVVANADVNGAENIRQKVSPSPSEDRSNGWL
AQPSTLLFDKDTGAFAPQEQVTS
Blast result :
Comments
ISHgi2 is 94% aa similar to ISH39.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2]Pinto, L.H., D'Alincourt Carvalho-Assef, A.P., Vieira, R.P., Clementino, M.M., Albano, R.M. (2015) J. Biotechnol. 212:69-70.
2]Pinto, L.H., D'Alincourt Carvalho-Assef, A.P., Vieira, R.P., Clementino, M.M., Albano, R.M. (2015) J. Biotechnol. 212:69-70.