ISMha5
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP017491 | ND | Mannheimia haemolytica | Mannheimia haemolytica 38599 Mannheimia haemolytica 33041 |
DNA section
IS Length : 1201 bp
Ends
IR Length : 23/26
IRL : tgtagaagatcaaacctaatctgacagtcccccgttttaaattaccgtgt
IRR : tgtagaagatcagacttgatctgacaattcactctaaaaagtgagagttt
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATATTGTTTACAAATTTAAC | GTAAATGTTAGTTTTTCTGA | 0 | |
| TCAGAAAAACTAACATTTAC | CATTAGCAACTGTTTTGTCC | 0 |
DNA sequence
TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAGATTAATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCC
ATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAACCACTCATCTAAATCCGCTTGT
AATGTCGTTAAATCCGTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGG
GATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTC
AGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAA
AGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGC
CAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACC
TTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAG
ATGCCTTGTTTACGGAGTTCCTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCAACAC
GATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCAT
TCCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATG
AGAGTTTCCTTTTTGTTTAGATTGATTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAGTGAATTGTCAGATCAAGTCTGATCTTCTAC
A
ATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAACCACTCATCTAAATCCGCTTGT
AATGTCGTTAAATCCGTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGG
GATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTC
AGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAA
AGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGC
CAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACC
TTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAG
ATGCCTTGTTTACGGAGTTCCTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCAACAC
GATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCAT
TCCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATG
AGAGTTTCCTTTTTGTTTAGATTGATTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAGTGAATTGTCAGATCAAGTCTGATCTTCTAC
A
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1041 bp | 346 aa | 103 | 1143 | + | No |
Chemistry : DDE
ORF sequence :
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSKELRKQGI
FVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKL
YTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTL
QADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
FVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKL
YTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTL
QADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
Blast result :
Comments
ISMha5 is 88% aa similar to ISShes15
References
1] Stefan Schwarz (2020) Direct submission.
2]Clawson,M.L., Schuller,G., Dickey,A.M., Bono,J.L., Murray,R.W., Sweeney,M.T., Apley,M.D., DeDonder,K.D., Capik,S.F., Larson,R., Lubbers,B.V., White,B.J., Harhay,G.P., Heaton,M.P., Chitko-McKown,C.G., Harhay,D.M. and Smith,T.P.L. (2016) Direct submission.
2]Clawson,M.L., Schuller,G., Dickey,A.M., Bono,J.L., Murray,R.W., Sweeney,M.T., Apley,M.D., DeDonder,K.D., Capik,S.F., Larson,R., Lubbers,B.V., White,B.J., Harhay,G.P., Heaton,M.P., Chitko-McKown,C.G., Harhay,D.M. and Smith,T.P.L. (2016) Direct submission.