ISPrre10

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KX832928 Y Providencia rettgeri
Providencia rettgeri
Providencia rettgeri 06-1619 plasmid p06-1619-NDM
DNA section
IS Length : 1443 bp

Ends


oriIS : TGAACATAAGCACGCCTGTGGCGTGAGCATCGCGGCTGAGCCGCTCTATTTCTAGGCAACTCCCTTCTCGTCTTTTATACTCTGCTCTATGTATATTCCC II struct. : No
terIS : TCATGGTTAATCAACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAACACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT II struct. : No
Comments : OriIS: TGAACATAAGCACGCCTGTGGCGTGAGCATCGCGGCTGAGCCGCTCTATTTCTAGGCAACTCCCTTCTCGTCTTTTATACTCTGCTCT TerIS: AACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAACACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site

DNA sequence

TGAACATAAGCACGCCTGTGGCGTGAGCATCGCGGCTGAGCCGCTCTATTTCTAGGCAACTCCCTTCTCGTCTTTTATACTCTGCTCTATGTATATTCCC
AGACCCGCTAAACTGCTATTTCAATACGATGACGGATGGAACCGCTTCATTGATAACAACTCTGTCGATGAATGGCAACTCCTCTGTGTTGAAAAGATGC
TCGCCTGCAGCACCTGTGCGATGGGCGTTCGCCGTTATTGCTGTTCTTCACCTGAATGCACGCATTCACGCTTCTTTTGTCAAACCTGTAAATCTAAAGC
CTGCAGCGCCTGTGGGCTCAAAGGCACCGAACAGTGGATTGCCCAGCAGCGTCATATTTTACCGGATTGCGAATGGCAACATATTACCCTTACGATGCCC
CACCTGCTTTGGCCTTTCTTCAATAACAACTGGATCTTACTTAATCAACTTTTTCGCTGTGCCACTCGTGCTATGCTCAAACATGCCAAGCGTCTTGGCC
TCGAAATTGGCATTTTTTGTGCCTTGCATACCTATGGTCGCCAACTCAATCAACATCCGCATATTCATTTATCCGTCACCCGAGGCGGACTCACGCAATA
TGACACCTGGAAACCGATTTTTTTCAAAAAGAAAGACGTCGAAAAAGTCTGGCGCAGCGCTATCGTTCGACTTCTTCGTGACAGCTATTTTCAGTTACAA
CCCAATAAATTGCCTAACTTCGGGCACATTCGGGATTATCCGACCTGGTGTCGTTACCTCAATGCCCAGTTTCAACGTTATTGGAAAGTGCATTTTGCTA
AAAAGACCCGAGGCGCTTGGCACAACGTGAAATATCTGGGCCGATATCTAAAACGTCCGCCTATCTCGGCTTCCCAATTGAAACACTACAGCGGGGGCAC
AGTAGTCCATCATTATTATGATCACCACAGCCAACAATATCGACGACAGACCTTATCCCAAGAAGAAATGATACGACGTTATGTCAGTCATATCCCCGCA
CGGCATTTTAAGATGATCCGCTATTACGGTTTTTTAGCCAATCGCAAACGCGGTCGCTTATTACCCAAAGTGTATGACGCGTTGGATATGAACCATCCTA
ACGTGCCTGAAAAACCAGGTTTTGCGGCTCTTATCAAAGGATTTTTAAACACAGATCCGTACCAATGTATTTTATGTGGAAACCGACTGCGGTTTATGAG
TGCGGAAAAAGGCATACATGCAGTCACTTTATTATCAGAAAGACGAGATAAAATGGCTCAAAAACGATGGTTACAAACTGCAGTCTAGGATCAGTGTGCC
TATAATTAGGCTTTTAGGTCATAATTTAAACGAATGACTGTTCTCATGGTTAATCAACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAAC
ACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1200 bp399 aa891288+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MYIPRPAKLLFQYDDGWNRFIDNNSVDEWQLLCVEKMLACSTCAMGVRRYCCSSPECTHSRFFCQTCKSKACSACGLKGTEQWIAQQRHILPDCEWQHIT
LTMPHLLWPFFNNNWILLNQLFRCATRAMLKHAKRLGLEIGIFCALHTYGRQLNQHPHIHLSVTRGGLTQYDTWKPIFFKKKDVEKVWRSAIVRLLRDSY
FQLQPNKLPNFGHIRDYPTWCRYLNAQFQRYWKVHFAKKTRGAWHNVKYLGRYLKRPPISASQLKHYSGGTVVHHYYDHHSQQYRRQTLSQEEMIRRYVS
HIPARHFKMIRYYGFLANRKRGRLLPKVYDALDMNHPNVPEKPGFAALIKGFLNTDPYQCILCGNRLRFMSAEKGIHAVTLLSERRDKMAQKRWLQTAV

 

Blast result :
Comments
ISPrre10 is 54% aa similar to ISVa3. ISPrre10 was identified mobilizing the blaNDM-1 gene in Providencia rettgeri , this gene is related with the carbapenem resistance in Gram negative bacteria.
References
1] Escobar-Perez et al (2020) Direct submission.