ISPrre10
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KX832928 | Y | Providencia rettgeri | Providencia rettgeri Providencia rettgeri 06-1619 plasmid p06-1619-NDM |
DNA section
IS Length : 1443 bp
Ends
oriIS : TGAACATAAGCACGCCTGTGGCGTGAGCATCGCGGCTGAGCCGCTCTATTTCTAGGCAACTCCCTTCTCGTCTTTTATACTCTGCTCTATGTATATTCCC II struct. : No
terIS : TCATGGTTAATCAACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAACACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT II struct. : No
Comments : OriIS: TGAACATAAGCACGCCTGTGGCGTGAGCATCGCGGCTGAGCCGCTCTATTTCTAGGCAACTCCCTTCTCGTCTTTTATACTCTGCTCT TerIS: AACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAACACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
DNA sequence
TGAACATAAGCACGCCTGTGGCGTGAGCATCGCGGCTGAGCCGCTCTATTTCTAGGCAACTCCCTTCTCGTCTTTTATACTCTGCTCTATGTATATTCCC
AGACCCGCTAAACTGCTATTTCAATACGATGACGGATGGAACCGCTTCATTGATAACAACTCTGTCGATGAATGGCAACTCCTCTGTGTTGAAAAGATGC
TCGCCTGCAGCACCTGTGCGATGGGCGTTCGCCGTTATTGCTGTTCTTCACCTGAATGCACGCATTCACGCTTCTTTTGTCAAACCTGTAAATCTAAAGC
CTGCAGCGCCTGTGGGCTCAAAGGCACCGAACAGTGGATTGCCCAGCAGCGTCATATTTTACCGGATTGCGAATGGCAACATATTACCCTTACGATGCCC
CACCTGCTTTGGCCTTTCTTCAATAACAACTGGATCTTACTTAATCAACTTTTTCGCTGTGCCACTCGTGCTATGCTCAAACATGCCAAGCGTCTTGGCC
TCGAAATTGGCATTTTTTGTGCCTTGCATACCTATGGTCGCCAACTCAATCAACATCCGCATATTCATTTATCCGTCACCCGAGGCGGACTCACGCAATA
TGACACCTGGAAACCGATTTTTTTCAAAAAGAAAGACGTCGAAAAAGTCTGGCGCAGCGCTATCGTTCGACTTCTTCGTGACAGCTATTTTCAGTTACAA
CCCAATAAATTGCCTAACTTCGGGCACATTCGGGATTATCCGACCTGGTGTCGTTACCTCAATGCCCAGTTTCAACGTTATTGGAAAGTGCATTTTGCTA
AAAAGACCCGAGGCGCTTGGCACAACGTGAAATATCTGGGCCGATATCTAAAACGTCCGCCTATCTCGGCTTCCCAATTGAAACACTACAGCGGGGGCAC
AGTAGTCCATCATTATTATGATCACCACAGCCAACAATATCGACGACAGACCTTATCCCAAGAAGAAATGATACGACGTTATGTCAGTCATATCCCCGCA
CGGCATTTTAAGATGATCCGCTATTACGGTTTTTTAGCCAATCGCAAACGCGGTCGCTTATTACCCAAAGTGTATGACGCGTTGGATATGAACCATCCTA
ACGTGCCTGAAAAACCAGGTTTTGCGGCTCTTATCAAAGGATTTTTAAACACAGATCCGTACCAATGTATTTTATGTGGAAACCGACTGCGGTTTATGAG
TGCGGAAAAAGGCATACATGCAGTCACTTTATTATCAGAAAGACGAGATAAAATGGCTCAAAAACGATGGTTACAAACTGCAGTCTAGGATCAGTGTGCC
TATAATTAGGCTTTTAGGTCATAATTTAAACGAATGACTGTTCTCATGGTTAATCAACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAAC
ACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT
AGACCCGCTAAACTGCTATTTCAATACGATGACGGATGGAACCGCTTCATTGATAACAACTCTGTCGATGAATGGCAACTCCTCTGTGTTGAAAAGATGC
TCGCCTGCAGCACCTGTGCGATGGGCGTTCGCCGTTATTGCTGTTCTTCACCTGAATGCACGCATTCACGCTTCTTTTGTCAAACCTGTAAATCTAAAGC
CTGCAGCGCCTGTGGGCTCAAAGGCACCGAACAGTGGATTGCCCAGCAGCGTCATATTTTACCGGATTGCGAATGGCAACATATTACCCTTACGATGCCC
CACCTGCTTTGGCCTTTCTTCAATAACAACTGGATCTTACTTAATCAACTTTTTCGCTGTGCCACTCGTGCTATGCTCAAACATGCCAAGCGTCTTGGCC
TCGAAATTGGCATTTTTTGTGCCTTGCATACCTATGGTCGCCAACTCAATCAACATCCGCATATTCATTTATCCGTCACCCGAGGCGGACTCACGCAATA
TGACACCTGGAAACCGATTTTTTTCAAAAAGAAAGACGTCGAAAAAGTCTGGCGCAGCGCTATCGTTCGACTTCTTCGTGACAGCTATTTTCAGTTACAA
CCCAATAAATTGCCTAACTTCGGGCACATTCGGGATTATCCGACCTGGTGTCGTTACCTCAATGCCCAGTTTCAACGTTATTGGAAAGTGCATTTTGCTA
AAAAGACCCGAGGCGCTTGGCACAACGTGAAATATCTGGGCCGATATCTAAAACGTCCGCCTATCTCGGCTTCCCAATTGAAACACTACAGCGGGGGCAC
AGTAGTCCATCATTATTATGATCACCACAGCCAACAATATCGACGACAGACCTTATCCCAAGAAGAAATGATACGACGTTATGTCAGTCATATCCCCGCA
CGGCATTTTAAGATGATCCGCTATTACGGTTTTTTAGCCAATCGCAAACGCGGTCGCTTATTACCCAAAGTGTATGACGCGTTGGATATGAACCATCCTA
ACGTGCCTGAAAAACCAGGTTTTGCGGCTCTTATCAAAGGATTTTTAAACACAGATCCGTACCAATGTATTTTATGTGGAAACCGACTGCGGTTTATGAG
TGCGGAAAAAGGCATACATGCAGTCACTTTATTATCAGAAAGACGAGATAAAATGGCTCAAAAACGATGGTTACAAACTGCAGTCTAGGATCAGTGTGCC
TATAATTAGGCTTTTAGGTCATAATTTAAACGAATGACTGTTCTCATGGTTAATCAACGAATAAATAATCAGAATTTAATAAAAACATACCACTCAAAAC
ACTCGATTCGTACGTTACTTCATTGATTGAGATTCCTAACCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1200 bp | 399 aa | 89 | 1288 | + | No |
Chemistry : Y2
ORF sequence :
MYIPRPAKLLFQYDDGWNRFIDNNSVDEWQLLCVEKMLACSTCAMGVRRYCCSSPECTHSRFFCQTCKSKACSACGLKGTEQWIAQQRHILPDCEWQHIT
LTMPHLLWPFFNNNWILLNQLFRCATRAMLKHAKRLGLEIGIFCALHTYGRQLNQHPHIHLSVTRGGLTQYDTWKPIFFKKKDVEKVWRSAIVRLLRDSY
FQLQPNKLPNFGHIRDYPTWCRYLNAQFQRYWKVHFAKKTRGAWHNVKYLGRYLKRPPISASQLKHYSGGTVVHHYYDHHSQQYRRQTLSQEEMIRRYVS
HIPARHFKMIRYYGFLANRKRGRLLPKVYDALDMNHPNVPEKPGFAALIKGFLNTDPYQCILCGNRLRFMSAEKGIHAVTLLSERRDKMAQKRWLQTAV
LTMPHLLWPFFNNNWILLNQLFRCATRAMLKHAKRLGLEIGIFCALHTYGRQLNQHPHIHLSVTRGGLTQYDTWKPIFFKKKDVEKVWRSAIVRLLRDSY
FQLQPNKLPNFGHIRDYPTWCRYLNAQFQRYWKVHFAKKTRGAWHNVKYLGRYLKRPPISASQLKHYSGGTVVHHYYDHHSQQYRRQTLSQEEMIRRYVS
HIPARHFKMIRYYGFLANRKRGRLLPKVYDALDMNHPNVPEKPGFAALIKGFLNTDPYQCILCGNRLRFMSAEKGIHAVTLLSERRDKMAQKRWLQTAV
Blast result :
Comments
ISPrre10 is 54% aa similar to ISVa3. ISPrre10 was identified mobilizing the blaNDM-1 gene in Providencia rettgeri , this gene is related with the carbapenem resistance in Gram negative bacteria.
References
1] Escobar-Perez et al (2020) Direct submission.