ISLad6

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP043397 ND Leclercia adecarboxylata
Leclercia adecarboxylata L21
DNA section
IS Length : 1365 bp

Ends


IR Length : 13/15

IRL : GAATGGAAGGGACTTCCCCTGGATATGCGCCTGATTAACTCTTGTGCAAT
IRR : TATAAGGGCTTCCCCGGCGTGTCAACGCCGGTGTTTATGGTTTCTGTCTG

Comments : IRL : GAATGGAAGGGACTTCCCCTGGATATGCGCCTGATTAACTCTTGTGCAAT IRR : ---TATAAGGG-CTTCCCCGGCGTGTCAACGCCGGTGTTTATGGTTTCTGTCTG IRs are not at the termini of the IS, according to the rules of IS1111 subgroup.

Insertion site


Left flankDirect repeatRight flankDR Length
GCCCCTTAACGTACAATAAT0

DNA sequence

GAATGGAAGGGACTTCCCCTGGATATGCGCCTGATTAACTCTTGTGCAATCATGGGGTAAACATAGCCCCGGAGGGATTCGTTATGACCATCACGACTGT
CGGTATCGATCTTGCTAAAAATGTGTTCGCTGTTCACTGCGTTGACCAACACGGTAAAACTGTTCTGGTTAAACCCAAAGTATCGCGTGCTGCCCTTCCT
GAGCTGATTGCCAGTTTACCTCCCTGTGTTATCGGGATGGAGGCATGCTCCGGGGCTCACTACTGGGCAAGGTTGTTTCGGCAATATGGTCATGAACCAC
GGCTGATGGCTGCTAAATTTGTATCTCCTTACCGCATGGCCGGTAAATCAGGCAAAAATGATGCAGCTGATGCTCAGGCTATCTGTGAAGCAGTTCGTCG
CCCGCATATGCGGTTTGTACCAGTGAAGGATGAGAGCCAGCAGGCGATGCAATGCCTACACCGTATCAGACAGGGTTTTATCGAAGAGAAAACAGCAACA
TATAACCGATTGAGAGGTTTGATATCGGAATTCGGTGTCATCGCCCCACAAAGTACAGATGCCCTGCGTCACATGGTTTCTGAGCAGAAGAGTTCTTTGC
CACTTCAGGTTCAACAATGTGTTAATGACCTGCTGGAACACATTGATCGTATTGAAGATAATATTACTGAATATGACCGGATTTTGTCCCGCATGGCAAA
AACAGATCACCGCAGCCAGCGATTGATGGAACTGAAAGGGATTGGTCCCACAACGGCCTGTGCGCTGGTCGCCAGTATCGGTAATGCACACGATTTTAAA
AATGGGCGACAACTGGCAGCCTGGCTGGGACTAACGCCATCGCAGTACAGCAGTGGTGGGAAATCAAAGCTTGGCAGGATAACTAAAGCTGGCGATTCGT
ATCTGCGAACGCTACTGGTTCAGGGGGCTCGTTCGGTTCTGATTGGTGCCGAGAAAAGGACTGATTTATTCAGTCGTTGGGTCTGTTCACTGGTCGATCG
CAGAGGATACTGGCGTGCCGTTGTAGCCATCGCCGCCAAAAACGCAAGGCTGTGCTGGGCATCATTGCATTACGGTGATGATTTCAGGCTGTACTCAGCC
AGCTAAAGCACGAAACAAAATAACCATCTGACCTGCAATTCGTTGATGATAAAGGGTTATACCCCGTGAGGCCTATCTGGCTATTGTACAGGATATACGT
ATCCGCTTAACGAACAAGAACCTCACGCGCGTCTTTCATCAGGGTCCGAATCGATGACGATTCATCATGGCCGTTTATAGTACCGCAGTCTCTCCCCTTT
ATTTTTACTGAAGAGCAGACAGAAACCATAAACACCGGCGTTGACACGCCGGGGAAGCCCTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa841106+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTITTVGIDLAKNVFAVHCVDQHGKTVLVKPKVSRAALPELIASLPPCVIGMEACSGAHYWARLFRQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAI
CEAVRRPHMRFVPVKDESQQAMQCLHRIRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHMVSEQKSSLPLQVQQCVNDLLEHIDRIEDNITEYDRI
LSRMAKTDHRSQRLMELKGIGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWV
CSLVDRRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS

 

Blast result :
Comments
ISLad6 is 98% aa similar to IS1618
References
1] Dongsheng Zhou (2020) Direct submission.
2] Zhou,D.S. and Zeng,L. (2019) Direct GenBank submission.