ISLad6
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP043397 | ND | Leclercia adecarboxylata | Leclercia adecarboxylata L21 |
DNA section
IS Length : 1365 bp
Ends
IR Length : 13/15
IRL : GAATGGAAGGGACTTCCCCTGGATATGCGCCTGATTAACTCTTGTGCAAT
IRR : TATAAGGGCTTCCCCGGCGTGTCAACGCCGGTGTTTATGGTTTCTGTCTG
Comments : IRL : GAATGGAAGGGACTTCCCCTGGATATGCGCCTGATTAACTCTTGTGCAAT IRR : ---TATAAGGG-CTTCCCCGGCGTGTCAACGCCGGTGTTTATGGTTTCTGTCTG IRs are not at the termini of the IS, according to the rules of IS1111 subgroup.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCCTTAAC | GTACAATAAT | 0 |
DNA sequence
GAATGGAAGGGACTTCCCCTGGATATGCGCCTGATTAACTCTTGTGCAATCATGGGGTAAACATAGCCCCGGAGGGATTCGTTATGACCATCACGACTGT
CGGTATCGATCTTGCTAAAAATGTGTTCGCTGTTCACTGCGTTGACCAACACGGTAAAACTGTTCTGGTTAAACCCAAAGTATCGCGTGCTGCCCTTCCT
GAGCTGATTGCCAGTTTACCTCCCTGTGTTATCGGGATGGAGGCATGCTCCGGGGCTCACTACTGGGCAAGGTTGTTTCGGCAATATGGTCATGAACCAC
GGCTGATGGCTGCTAAATTTGTATCTCCTTACCGCATGGCCGGTAAATCAGGCAAAAATGATGCAGCTGATGCTCAGGCTATCTGTGAAGCAGTTCGTCG
CCCGCATATGCGGTTTGTACCAGTGAAGGATGAGAGCCAGCAGGCGATGCAATGCCTACACCGTATCAGACAGGGTTTTATCGAAGAGAAAACAGCAACA
TATAACCGATTGAGAGGTTTGATATCGGAATTCGGTGTCATCGCCCCACAAAGTACAGATGCCCTGCGTCACATGGTTTCTGAGCAGAAGAGTTCTTTGC
CACTTCAGGTTCAACAATGTGTTAATGACCTGCTGGAACACATTGATCGTATTGAAGATAATATTACTGAATATGACCGGATTTTGTCCCGCATGGCAAA
AACAGATCACCGCAGCCAGCGATTGATGGAACTGAAAGGGATTGGTCCCACAACGGCCTGTGCGCTGGTCGCCAGTATCGGTAATGCACACGATTTTAAA
AATGGGCGACAACTGGCAGCCTGGCTGGGACTAACGCCATCGCAGTACAGCAGTGGTGGGAAATCAAAGCTTGGCAGGATAACTAAAGCTGGCGATTCGT
ATCTGCGAACGCTACTGGTTCAGGGGGCTCGTTCGGTTCTGATTGGTGCCGAGAAAAGGACTGATTTATTCAGTCGTTGGGTCTGTTCACTGGTCGATCG
CAGAGGATACTGGCGTGCCGTTGTAGCCATCGCCGCCAAAAACGCAAGGCTGTGCTGGGCATCATTGCATTACGGTGATGATTTCAGGCTGTACTCAGCC
AGCTAAAGCACGAAACAAAATAACCATCTGACCTGCAATTCGTTGATGATAAAGGGTTATACCCCGTGAGGCCTATCTGGCTATTGTACAGGATATACGT
ATCCGCTTAACGAACAAGAACCTCACGCGCGTCTTTCATCAGGGTCCGAATCGATGACGATTCATCATGGCCGTTTATAGTACCGCAGTCTCTCCCCTTT
ATTTTTACTGAAGAGCAGACAGAAACCATAAACACCGGCGTTGACACGCCGGGGAAGCCCTTATA
CGGTATCGATCTTGCTAAAAATGTGTTCGCTGTTCACTGCGTTGACCAACACGGTAAAACTGTTCTGGTTAAACCCAAAGTATCGCGTGCTGCCCTTCCT
GAGCTGATTGCCAGTTTACCTCCCTGTGTTATCGGGATGGAGGCATGCTCCGGGGCTCACTACTGGGCAAGGTTGTTTCGGCAATATGGTCATGAACCAC
GGCTGATGGCTGCTAAATTTGTATCTCCTTACCGCATGGCCGGTAAATCAGGCAAAAATGATGCAGCTGATGCTCAGGCTATCTGTGAAGCAGTTCGTCG
CCCGCATATGCGGTTTGTACCAGTGAAGGATGAGAGCCAGCAGGCGATGCAATGCCTACACCGTATCAGACAGGGTTTTATCGAAGAGAAAACAGCAACA
TATAACCGATTGAGAGGTTTGATATCGGAATTCGGTGTCATCGCCCCACAAAGTACAGATGCCCTGCGTCACATGGTTTCTGAGCAGAAGAGTTCTTTGC
CACTTCAGGTTCAACAATGTGTTAATGACCTGCTGGAACACATTGATCGTATTGAAGATAATATTACTGAATATGACCGGATTTTGTCCCGCATGGCAAA
AACAGATCACCGCAGCCAGCGATTGATGGAACTGAAAGGGATTGGTCCCACAACGGCCTGTGCGCTGGTCGCCAGTATCGGTAATGCACACGATTTTAAA
AATGGGCGACAACTGGCAGCCTGGCTGGGACTAACGCCATCGCAGTACAGCAGTGGTGGGAAATCAAAGCTTGGCAGGATAACTAAAGCTGGCGATTCGT
ATCTGCGAACGCTACTGGTTCAGGGGGCTCGTTCGGTTCTGATTGGTGCCGAGAAAAGGACTGATTTATTCAGTCGTTGGGTCTGTTCACTGGTCGATCG
CAGAGGATACTGGCGTGCCGTTGTAGCCATCGCCGCCAAAAACGCAAGGCTGTGCTGGGCATCATTGCATTACGGTGATGATTTCAGGCTGTACTCAGCC
AGCTAAAGCACGAAACAAAATAACCATCTGACCTGCAATTCGTTGATGATAAAGGGTTATACCCCGTGAGGCCTATCTGGCTATTGTACAGGATATACGT
ATCCGCTTAACGAACAAGAACCTCACGCGCGTCTTTCATCAGGGTCCGAATCGATGACGATTCATCATGGCCGTTTATAGTACCGCAGTCTCTCCCCTTT
ATTTTTACTGAAGAGCAGACAGAAACCATAAACACCGGCGTTGACACGCCGGGGAAGCCCTTATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 84 | 1106 | + | No |
Chemistry : DEDD
ORF sequence :
MTITTVGIDLAKNVFAVHCVDQHGKTVLVKPKVSRAALPELIASLPPCVIGMEACSGAHYWARLFRQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAI
CEAVRRPHMRFVPVKDESQQAMQCLHRIRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHMVSEQKSSLPLQVQQCVNDLLEHIDRIEDNITEYDRI
LSRMAKTDHRSQRLMELKGIGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWV
CSLVDRRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS
CEAVRRPHMRFVPVKDESQQAMQCLHRIRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHMVSEQKSSLPLQVQQCVNDLLEHIDRIEDNITEYDRI
LSRMAKTDHRSQRLMELKGIGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWV
CSLVDRRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS
Blast result :
Comments
ISLad6 is 98% aa similar to IS1618
References
1] Dongsheng Zhou (2020) Direct submission.
2] Zhou,D.S. and Zeng,L. (2019) Direct GenBank submission.
2] Zhou,D.S. and Zeng,L. (2019) Direct GenBank submission.