ISH26-1
- Family IS4
- Group ISH8
Isoform ISH26Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X04832 | ND | Halobacterium salinarum | Halobacterium salinarum |
DNA section
IS Length : 1705 bp
Ends
IR Length : 16
IRL : CATCCGTCTTTAGTTAAGCCTCACACCTCGGTTGTGTAGTGGTAGCGAGC
IRR : CATCCGTCTTTAGTTAGTCGAGGAATCGCGTGACAGCAGCGGCTTATCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNAGGCCA | TTGTGAGGCCA | TACCCNNNNN | 11 |
DNA sequence
CATCCGTCTTTAGTTAAGCCTCACACCTCGGTTGTGTAGTGGTAGCGAGCGTCTCTTGTAAGATTGGTCGTTGCTTGTGGATCTTTTGAGCGTCTTCGAT
CAGCCGGTCGAGAAGCGGCGGTGGTGAGTAGCCAAGGAACTCACCGAGTTCGAGGAGAATAAGCTGGGCGTGCGACCGGTCGCAGGTCTGTCGGAAACAC
AACGCTCATCATCCGCCTGCTCAGTGACTAGATCCAACGAGTCGCGGCTTACAAGCAGCGACAGCAGCGCTGCGTACAATAAGATCCTCACCACGTGTTC
GTCACTCGTGTCGAACTCGTCCAATTCGTACTGCGTCTTCAGCTCCCGGAACAGCAACTCAACTTCCCACCGACACGGTAGATCTCCGCTAAATCCGCCG
GAAAGAACTCTTTCCTCGCTAAATTCGTCATGTACAGGTGGTAGTCGTCGGCGTCCTCGTCGCGGACGCCGACGACGCGAAACCGCTTCGTATCCAGCGA
CTGTGTCCCATTGTACGGCCCCCGTTTGGAATTCGACTTCGACCTCCACATCGATGTATTTCCGGTCAAGATCATCGAGAACAGCTCGGAGCTGCTTGCC
CTCTAAGGGAATGGCGCGGCCGCGATTCGTAGCTCTCCGGTAATCAGCGGATTCGCGTTCTGCTTCAGCCGACTCACGAACGTAGCCGTCATTTTCGTCG
ATCAGCGCAAACCGGCGGTACTTGAAGTAGGGCGAGATCGAACAGCATGAGGCGATTCTCAAGCCACGGCCCTGTTTTGAACAAGGTGCTGTCGTGCGTT
TTCTCGTTAGCAGTATCGAGCTGTTCAATCGTCTGCTCTGTGGCATTGTGAGGCAGGTGACTTCGCTCCAGCCTGCTCCTCGTGGCGGGCTTCGAACTGA
TCTGAGAGAAATTCGTGTAACCGCAACACCGTTCCATCAGCGATCATCACGTCTCTAAATCGGTCGATATCAGCGTCAACAGCGTTAGGAACGGCGACCT
CGTCGAGACCATGCTCGACGAGGTCGCGGAGATACTCCGCAAGCGTCGGTGTCAACCGCTGATAGAATCCACCCGGAGAAATCGTCTCATCGGCAGTAGA
GTTGTAACAGCGTCTAAAACCGGCGAGTGTTCGCTGTTCCTGCGCGAAGCCGAACACGAACGCCCAAACGAAGGCAGGGATCTGGAGCTTGCGGTCACGT
TCGACCACGCCGAGTTCCTCGGCGTGGTCTTCGAGGAACTCAGAGGGAAACAGTGTAGTGAGCCGACGCATAATCCGAGGTGAGGAGTCCTTGTCGTGCA
CAGACTGGACTTCCTCATTCCTTCCGAAAGATGCCTCGATAAGCCGCGCTATCACGCGGTTTCTCGCTTAACTAAAGACGGATGCCCGCCAGGAGAGAGA
TCGGCTCGTCAGCTGTGGCGTTGTAGCTCCGCCTGAACCCAGCGAGTGTTCGCTGCTCCTGCGCGAAGCCGAACACGAGCGCCCATACGAGGACGGGTAT
CTGGAGCGTACGGTTGCGTTCGACCACGCCGAGTTCCTCGGCGTGGTCTTCGAGGAACTCAGAGGGAAACAGTGTAGTGAGCCGACGCATAATTCTCGAT
GGGGAGGCGTCTTGGTGCACACTTGCCGCCTCCTCATTCCTCTCGAAAAATAGCCTCGATAAGCCGCTGCTGTCACGCGATTCCTCGACTAACTAAAGAC
GGATG
CAGCCGGTCGAGAAGCGGCGGTGGTGAGTAGCCAAGGAACTCACCGAGTTCGAGGAGAATAAGCTGGGCGTGCGACCGGTCGCAGGTCTGTCGGAAACAC
AACGCTCATCATCCGCCTGCTCAGTGACTAGATCCAACGAGTCGCGGCTTACAAGCAGCGACAGCAGCGCTGCGTACAATAAGATCCTCACCACGTGTTC
GTCACTCGTGTCGAACTCGTCCAATTCGTACTGCGTCTTCAGCTCCCGGAACAGCAACTCAACTTCCCACCGACACGGTAGATCTCCGCTAAATCCGCCG
GAAAGAACTCTTTCCTCGCTAAATTCGTCATGTACAGGTGGTAGTCGTCGGCGTCCTCGTCGCGGACGCCGACGACGCGAAACCGCTTCGTATCCAGCGA
CTGTGTCCCATTGTACGGCCCCCGTTTGGAATTCGACTTCGACCTCCACATCGATGTATTTCCGGTCAAGATCATCGAGAACAGCTCGGAGCTGCTTGCC
CTCTAAGGGAATGGCGCGGCCGCGATTCGTAGCTCTCCGGTAATCAGCGGATTCGCGTTCTGCTTCAGCCGACTCACGAACGTAGCCGTCATTTTCGTCG
ATCAGCGCAAACCGGCGGTACTTGAAGTAGGGCGAGATCGAACAGCATGAGGCGATTCTCAAGCCACGGCCCTGTTTTGAACAAGGTGCTGTCGTGCGTT
TTCTCGTTAGCAGTATCGAGCTGTTCAATCGTCTGCTCTGTGGCATTGTGAGGCAGGTGACTTCGCTCCAGCCTGCTCCTCGTGGCGGGCTTCGAACTGA
TCTGAGAGAAATTCGTGTAACCGCAACACCGTTCCATCAGCGATCATCACGTCTCTAAATCGGTCGATATCAGCGTCAACAGCGTTAGGAACGGCGACCT
CGTCGAGACCATGCTCGACGAGGTCGCGGAGATACTCCGCAAGCGTCGGTGTCAACCGCTGATAGAATCCACCCGGAGAAATCGTCTCATCGGCAGTAGA
GTTGTAACAGCGTCTAAAACCGGCGAGTGTTCGCTGTTCCTGCGCGAAGCCGAACACGAACGCCCAAACGAAGGCAGGGATCTGGAGCTTGCGGTCACGT
TCGACCACGCCGAGTTCCTCGGCGTGGTCTTCGAGGAACTCAGAGGGAAACAGTGTAGTGAGCCGACGCATAATCCGAGGTGAGGAGTCCTTGTCGTGCA
CAGACTGGACTTCCTCATTCCTTCCGAAAGATGCCTCGATAAGCCGCGCTATCACGCGGTTTCTCGCTTAACTAAAGACGGATGCCCGCCAGGAGAGAGA
TCGGCTCGTCAGCTGTGGCGTTGTAGCTCCGCCTGAACCCAGCGAGTGTTCGCTGCTCCTGCGCGAAGCCGAACACGAGCGCCCATACGAGGACGGGTAT
CTGGAGCGTACGGTTGCGTTCGACCACGCCGAGTTCCTCGGCGTGGTCTTCGAGGAACTCAGAGGGAAACAGTGTAGTGAGCCGACGCATAATTCTCGAT
GGGGAGGCGTCTTGGTGCACACTTGCCGCCTCCTCATTCCTCTCGAAAAATAGCCTCGATAAGCCGCTGCTGTCACGCGATTCCTCGACTAACTAAAGAC
GGATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
447 bp | 148 aa | 435 | 881 | + | No |
Chemistry : DDE
ORF sequence :
MRRLTTLFPSEFLEDHAEELGVVERDRKLQIPAFVWAFVFGFAQEQRTLAGFRRCYNSTADETISPGGFYQRLTPTLAEYLRDLVEHGLDEVAVPNAVDA
DIDRFRDVMIADGTVLRLHEFLSDQFEARHEEQAGAKSPASQCHRADD
DIDRFRDVMIADGTVLRLHEFLSDQFEARHEEQAGAKSPASQCHRADD
Blast result :
Comments
ISH26-1 is a ISH26 variant found in the Halobacterium salinarum genome and consisting of the 1384 bp ISH26 element plus a direct, imperfect duplication of 321 bp.The first open reading frame is very closely related to the N terminal end of the Tpase of the different ISH8.
References
1] Ebert, K., Hanke, C., Delius, H., Goebel, W., and Pfeifer, F. (1987) Mol. Gen. Genet. 206, 81-87.
2] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.
2] Pfeifer, F., and Ghahraman, P. (1993) Mol. Gen. Genet. 238, 193-200.