ISPa125

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP045552 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
Pseudomonas aeruginosa 12939
Pseudomonas aeruginosa YT12746
DNA section
IS Length : 1343 bp

Ends


IR Length : 24/30

IRL : GGGCCTGTCAGTAATTTCGTGTTTGGGGCATAACATGAGGTCAAGGAGTG
IRR : GGGGGTGTCATAAATTCCGTGTTTAGGGCGGGTAGAGAATTACACGGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
CCAGGCAAAGCACAAGACCGAGCTGGCAT8

DNA sequence

GGGCCTGTCAGTAATTTCGTGTTTGGGGCATAACATGAGGTCAAGGAGTGTCTATGTCTCGCAAACCAAGAACCCAGCCGGCAGCGTTGCCTGTGATTCC
TTCCGAGTTGCTGGAGTCGTTTGGTGACGGCTCGATGACGGCCGAAGCTATCAATGCGGCGTCCCTGGCTTTCAAGAAGGCCCTGATCGAGCGGGCCCTG
GCCGGTGAGCTGAACCATCACCTGGGCTACCCGGCCGGCACAGCCAAGCCCGAGCGGATGAGTAATCAGCGCAACGGCAAGGGGGCCAAGACGGTGCTGA
CCCAGGAGGGGCCGATCCGTATCGACGTGCCCCGAGATCGCGAGGGCAGCTTTGCCCCGCTCCTGATCCCCAAGCATGAGCGCCGTTTTACTGGCTTTGA
TGACAAGATCGTCGCCATGTATGCCCGCGGCATGACGGTGCGCGAAATCCAGGGCTTTCTGCTGGAACAATACGGCACAGACGTCTCGCCGGACTTCATC
AGCTCGGTCACTGACGAGGTTATGGCCGAGGTCACCGCCTGGCAGGCCAGGCCGCTCGAGCCCATGTATCCGGTCGTGTTCTTTGACGCGCTGCGGGTCA
AGATCAGGGAGGATGCTGTCGTGCGCAACAAGGCCGTCTATCTGGCCCTGGGCGTGCTACCCGACGGCACACGCGATATCCTGGGTTTGTGGATTGAAGG
CACCGAAGGCGCCAAGTTCTGGATGAAGGTCTTCAACGACCTGAAGACCCGGGGCGTGGGCGATATCCTGATCGCCGTGACTGACGGGTTGAAGGGTATA
CCCGAGGCGCTGGCCGCGGTGTTCCCGGCCACCACACTGCAAACCTGCATCGTCCATCTGATCCGCAACAGCCTCGATTACGCGAGCTGGAAGGATCGCA
AGGCGCTGGCCGCCGCGATCCGACCGATCTATACCGCTGTCAGTGCTGAAGCGGCCCTGGCCGCGCTTGACGCCTTTGCCGATGGGCCGTGGGGTCAGAA
GTTCCCCACCGTCTGCGCGGCATGGCGCAATGCCTGGGATCGCGTGATTCCGTTCTTCGCCTTTGCGCCGGAGATCCGCAAGGTGATCTACACCACCAAC
GCCATCGAGAATGTCAACTCGCAGCTACGCAAGATCATCAAGACCCGGGGCCATTTCCCTACTGACGAAGCCGCCTCCAAGTTGATCTGGCTCGCGCTGC
GAAACATCACCGCCAAATGGAGCCGATCCGCTCACGACTGGAAGCAAGCCATGAACCAATTCGCTATCCTTTACGCTGACCGATTCAGTCGCCCTTCCGT
GTAATTCTCTACCCGCCCTAAACACGGAATTTATGACACCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa541304+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRKPRTQPAALPVIPSELLESFGDGSMTAEAINAASLAFKKALIERALAGELNHHLGYPAGTAKPERMSNQRNGKGAKTVLTQEGPIRIDVPRDREGSF
APLLIPKHERRFTGFDDKIVAMYARGMTVREIQGFLLEQYGTDVSPDFISSVTDEVMAEVTAWQARPLEPMYPVVFFDALRVKIREDAVVRNKAVYLALG
VLPDGTRDILGLWIEGTEGAKFWMKVFNDLKTRGVGDILIAVTDGLKGIPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRKALAAAIRPIYTAVSAEA
ALAALDAFADGPWGQKFPTVCAAWRNAWDRVIPFFAFAPEIRKVIYTTNAIENVNSQLRKIIKTRGHFPTDEAASKLIWLALRNITAKWSRSAHDWKQAM
NQFAILYADRFSRPSV

 

Blast result :
Comments
ISPa125 is 94% aa similar to ISRso7.
References
1] Dongsheng Zhou (2020) Direct submission.