ISPa125
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP045552 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa 12939 Pseudomonas aeruginosa YT12746 |
DNA section
IS Length : 1343 bp
Ends
IR Length : 24/30
IRL : GGGCCTGTCAGTAATTTCGTGTTTGGGGCATAACATGAGGTCAAGGAGTG
IRR : GGGGGTGTCATAAATTCCGTGTTTAGGGCGGGTAGAGAATTACACGGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCAGGCAAAG | CACAAGAC | CGAGCTGGCAT | 8 |
DNA sequence
GGGCCTGTCAGTAATTTCGTGTTTGGGGCATAACATGAGGTCAAGGAGTGTCTATGTCTCGCAAACCAAGAACCCAGCCGGCAGCGTTGCCTGTGATTCC
TTCCGAGTTGCTGGAGTCGTTTGGTGACGGCTCGATGACGGCCGAAGCTATCAATGCGGCGTCCCTGGCTTTCAAGAAGGCCCTGATCGAGCGGGCCCTG
GCCGGTGAGCTGAACCATCACCTGGGCTACCCGGCCGGCACAGCCAAGCCCGAGCGGATGAGTAATCAGCGCAACGGCAAGGGGGCCAAGACGGTGCTGA
CCCAGGAGGGGCCGATCCGTATCGACGTGCCCCGAGATCGCGAGGGCAGCTTTGCCCCGCTCCTGATCCCCAAGCATGAGCGCCGTTTTACTGGCTTTGA
TGACAAGATCGTCGCCATGTATGCCCGCGGCATGACGGTGCGCGAAATCCAGGGCTTTCTGCTGGAACAATACGGCACAGACGTCTCGCCGGACTTCATC
AGCTCGGTCACTGACGAGGTTATGGCCGAGGTCACCGCCTGGCAGGCCAGGCCGCTCGAGCCCATGTATCCGGTCGTGTTCTTTGACGCGCTGCGGGTCA
AGATCAGGGAGGATGCTGTCGTGCGCAACAAGGCCGTCTATCTGGCCCTGGGCGTGCTACCCGACGGCACACGCGATATCCTGGGTTTGTGGATTGAAGG
CACCGAAGGCGCCAAGTTCTGGATGAAGGTCTTCAACGACCTGAAGACCCGGGGCGTGGGCGATATCCTGATCGCCGTGACTGACGGGTTGAAGGGTATA
CCCGAGGCGCTGGCCGCGGTGTTCCCGGCCACCACACTGCAAACCTGCATCGTCCATCTGATCCGCAACAGCCTCGATTACGCGAGCTGGAAGGATCGCA
AGGCGCTGGCCGCCGCGATCCGACCGATCTATACCGCTGTCAGTGCTGAAGCGGCCCTGGCCGCGCTTGACGCCTTTGCCGATGGGCCGTGGGGTCAGAA
GTTCCCCACCGTCTGCGCGGCATGGCGCAATGCCTGGGATCGCGTGATTCCGTTCTTCGCCTTTGCGCCGGAGATCCGCAAGGTGATCTACACCACCAAC
GCCATCGAGAATGTCAACTCGCAGCTACGCAAGATCATCAAGACCCGGGGCCATTTCCCTACTGACGAAGCCGCCTCCAAGTTGATCTGGCTCGCGCTGC
GAAACATCACCGCCAAATGGAGCCGATCCGCTCACGACTGGAAGCAAGCCATGAACCAATTCGCTATCCTTTACGCTGACCGATTCAGTCGCCCTTCCGT
GTAATTCTCTACCCGCCCTAAACACGGAATTTATGACACCCCC
TTCCGAGTTGCTGGAGTCGTTTGGTGACGGCTCGATGACGGCCGAAGCTATCAATGCGGCGTCCCTGGCTTTCAAGAAGGCCCTGATCGAGCGGGCCCTG
GCCGGTGAGCTGAACCATCACCTGGGCTACCCGGCCGGCACAGCCAAGCCCGAGCGGATGAGTAATCAGCGCAACGGCAAGGGGGCCAAGACGGTGCTGA
CCCAGGAGGGGCCGATCCGTATCGACGTGCCCCGAGATCGCGAGGGCAGCTTTGCCCCGCTCCTGATCCCCAAGCATGAGCGCCGTTTTACTGGCTTTGA
TGACAAGATCGTCGCCATGTATGCCCGCGGCATGACGGTGCGCGAAATCCAGGGCTTTCTGCTGGAACAATACGGCACAGACGTCTCGCCGGACTTCATC
AGCTCGGTCACTGACGAGGTTATGGCCGAGGTCACCGCCTGGCAGGCCAGGCCGCTCGAGCCCATGTATCCGGTCGTGTTCTTTGACGCGCTGCGGGTCA
AGATCAGGGAGGATGCTGTCGTGCGCAACAAGGCCGTCTATCTGGCCCTGGGCGTGCTACCCGACGGCACACGCGATATCCTGGGTTTGTGGATTGAAGG
CACCGAAGGCGCCAAGTTCTGGATGAAGGTCTTCAACGACCTGAAGACCCGGGGCGTGGGCGATATCCTGATCGCCGTGACTGACGGGTTGAAGGGTATA
CCCGAGGCGCTGGCCGCGGTGTTCCCGGCCACCACACTGCAAACCTGCATCGTCCATCTGATCCGCAACAGCCTCGATTACGCGAGCTGGAAGGATCGCA
AGGCGCTGGCCGCCGCGATCCGACCGATCTATACCGCTGTCAGTGCTGAAGCGGCCCTGGCCGCGCTTGACGCCTTTGCCGATGGGCCGTGGGGTCAGAA
GTTCCCCACCGTCTGCGCGGCATGGCGCAATGCCTGGGATCGCGTGATTCCGTTCTTCGCCTTTGCGCCGGAGATCCGCAAGGTGATCTACACCACCAAC
GCCATCGAGAATGTCAACTCGCAGCTACGCAAGATCATCAAGACCCGGGGCCATTTCCCTACTGACGAAGCCGCCTCCAAGTTGATCTGGCTCGCGCTGC
GAAACATCACCGCCAAATGGAGCCGATCCGCTCACGACTGGAAGCAAGCCATGAACCAATTCGCTATCCTTTACGCTGACCGATTCAGTCGCCCTTCCGT
GTAATTCTCTACCCGCCCTAAACACGGAATTTATGACACCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 54 | 1304 | + | No |
Chemistry : DDE
ORF sequence :
MSRKPRTQPAALPVIPSELLESFGDGSMTAEAINAASLAFKKALIERALAGELNHHLGYPAGTAKPERMSNQRNGKGAKTVLTQEGPIRIDVPRDREGSF
APLLIPKHERRFTGFDDKIVAMYARGMTVREIQGFLLEQYGTDVSPDFISSVTDEVMAEVTAWQARPLEPMYPVVFFDALRVKIREDAVVRNKAVYLALG
VLPDGTRDILGLWIEGTEGAKFWMKVFNDLKTRGVGDILIAVTDGLKGIPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRKALAAAIRPIYTAVSAEA
ALAALDAFADGPWGQKFPTVCAAWRNAWDRVIPFFAFAPEIRKVIYTTNAIENVNSQLRKIIKTRGHFPTDEAASKLIWLALRNITAKWSRSAHDWKQAM
NQFAILYADRFSRPSV
APLLIPKHERRFTGFDDKIVAMYARGMTVREIQGFLLEQYGTDVSPDFISSVTDEVMAEVTAWQARPLEPMYPVVFFDALRVKIREDAVVRNKAVYLALG
VLPDGTRDILGLWIEGTEGAKFWMKVFNDLKTRGVGDILIAVTDGLKGIPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRKALAAAIRPIYTAVSAEA
ALAALDAFADGPWGQKFPTVCAAWRNAWDRVIPFFAFAPEIRKVIYTTNAIENVNSQLRKIIKTRGHFPTDEAASKLIWLALRNITAKWSRSAHDWKQAM
NQFAILYADRFSRPSV
Blast result :
Comments
ISPa125 is 94% aa similar to ISRso7.
References
1] Dongsheng Zhou (2020) Direct submission.