ISSen13
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AAPTUH010000040 | ND | Salmonella enterica | Salmonella enterica PNUSAS133350 |
DNA section
IS Length : 1542 bp
Ends
IR Length : 12/28
IRL : TGTAGAGGCTCAATGCTAATGTCTATTTGTGGCTCATTAGGAATGTCCAG
IRR : TGATTGCATTAACTGCAACACAGCGCTGCTGGTCAGTGAGTGCGAGGTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTATACGCACT | AAG | CCTGAAAAAAATTCTG | 3 |
DNA sequence
TGTAGAGGCTCAATGCTAATGTCTATTTGTGGCTCATTAGGAATGTCCAGGCTATAGTTTTCAAACCTGTATGCCTAGTCAACGACTCGCTTTTCCTGAT
GAGGAGTTTTCTATGGCTATACATGACGCCGGGATGTTCACCGTGAAAGAAATCAACCGCCTCAAAATTCTTCAGGATGTCGTTGAACGTAACCTGCGTC
CTGGCCAGGCTGCCGAGATGCTCGGCATCACGCCACGTCATTGCAGCCGTCTGCTGAAGCGTTATCGCCAGTCCGGGCCGCTTGGTATGAACAACCAGAG
TCGCGGTCGCACTGGCAACCGCCTGTTGCCCACATCACTGACTGACCAGGCACTGAGTATCATACGAGAACGCTACCGCGATTTTGGCCCCACGCTGGCC
CGGGAAAAACTGGAGGAAGTTCACGGTCTGGTCCTGGGCAAGGAAACCATCAGACGCCTTATGATAAAAGCCGGACTCTGGATCCCCCGAAGACAACGCG
CACCGAAAATTCATCAGCCCCGTTACCGGCGGCCCTGTACTGGCGAGCTTATACAGATTGACGGCTGTGACCATCACTGGTTTGAAAACCGGGGTCGGCC
TTGTACGGCACTTGTATATGTCGACGATGCCACCAGTCGTCTGATGCACCTGCTGTTTGTTAAATCTGAGTCCACCTTTAGCTATTTTGAAGCGACCCGT
GGCTATATCGAGAAATACGGTAAGCCCATGATCCTTTACAGCGATAAAGCCAGCGTATTCAGAGTCAATAATAAGCACGCTACCACTGGTCCCGGTGAAA
CCCAGTTTGCCCGAGCCATGCGCTGCCTCAACATTACCCCGCTATGTGCGGAGACCAGCCAGGCAAAGGGCCGTGTGGAACGCGCCCACCTGACACTTCA
GGACCGGCTGGTTAAGGAGCTCAGGCTTAAAGGGATCAGTACGATAGAAGCCGCGAATGCATTTGCTGAGGAATACAAAGCCCCCCTGCATGATTTTAAC
GCACATCGGCCGCTGGCATTAGACGATGACCTGGATGCGGAATTTACCTGGCGAGAGCCCCGTCGTGTATCAAAAAGTCTGACCGTACAATATGACAAAA
TGCTCTATCTGATTGAAGACAGCGAATACAGTAGAAGGGCTATCGGCAAGTATATTGATGTCTGGCACTATCCTGACGGACATAAGGAACTGCGGTTGAA
TGGCGTGCTACTGCCCTACTCCACCTACGACCGATTGTCTGAAGTCGATCCTGTCGCGATTGTTGATAACAAAAGACTGGGCCATGTATTGGATGTTGCC
CGCCAGGTCCAGAAAAAAAGGGACAATAATCGCTCCCAGTCGCTACCTTCAGGAGATGAGCCTTCCCGCAGACGACATGCTCCAGGCATCAACAAATCCC
AGCGCTCGCTGAACGAAGATGACCTGCTTGAAGCCATAATAAAGCTTCAAGGAAGCTCTGAGGCCATCTTTGGTAAAAGGTGAACTTGTCGGAAACCTCG
CACTCACTGACCAGCAGCGCTGTGTTGCAGTTAATGCAATCA
GAGGAGTTTTCTATGGCTATACATGACGCCGGGATGTTCACCGTGAAAGAAATCAACCGCCTCAAAATTCTTCAGGATGTCGTTGAACGTAACCTGCGTC
CTGGCCAGGCTGCCGAGATGCTCGGCATCACGCCACGTCATTGCAGCCGTCTGCTGAAGCGTTATCGCCAGTCCGGGCCGCTTGGTATGAACAACCAGAG
TCGCGGTCGCACTGGCAACCGCCTGTTGCCCACATCACTGACTGACCAGGCACTGAGTATCATACGAGAACGCTACCGCGATTTTGGCCCCACGCTGGCC
CGGGAAAAACTGGAGGAAGTTCACGGTCTGGTCCTGGGCAAGGAAACCATCAGACGCCTTATGATAAAAGCCGGACTCTGGATCCCCCGAAGACAACGCG
CACCGAAAATTCATCAGCCCCGTTACCGGCGGCCCTGTACTGGCGAGCTTATACAGATTGACGGCTGTGACCATCACTGGTTTGAAAACCGGGGTCGGCC
TTGTACGGCACTTGTATATGTCGACGATGCCACCAGTCGTCTGATGCACCTGCTGTTTGTTAAATCTGAGTCCACCTTTAGCTATTTTGAAGCGACCCGT
GGCTATATCGAGAAATACGGTAAGCCCATGATCCTTTACAGCGATAAAGCCAGCGTATTCAGAGTCAATAATAAGCACGCTACCACTGGTCCCGGTGAAA
CCCAGTTTGCCCGAGCCATGCGCTGCCTCAACATTACCCCGCTATGTGCGGAGACCAGCCAGGCAAAGGGCCGTGTGGAACGCGCCCACCTGACACTTCA
GGACCGGCTGGTTAAGGAGCTCAGGCTTAAAGGGATCAGTACGATAGAAGCCGCGAATGCATTTGCTGAGGAATACAAAGCCCCCCTGCATGATTTTAAC
GCACATCGGCCGCTGGCATTAGACGATGACCTGGATGCGGAATTTACCTGGCGAGAGCCCCGTCGTGTATCAAAAAGTCTGACCGTACAATATGACAAAA
TGCTCTATCTGATTGAAGACAGCGAATACAGTAGAAGGGCTATCGGCAAGTATATTGATGTCTGGCACTATCCTGACGGACATAAGGAACTGCGGTTGAA
TGGCGTGCTACTGCCCTACTCCACCTACGACCGATTGTCTGAAGTCGATCCTGTCGCGATTGTTGATAACAAAAGACTGGGCCATGTATTGGATGTTGCC
CGCCAGGTCCAGAAAAAAAGGGACAATAATCGCTCCCAGTCGCTACCTTCAGGAGATGAGCCTTCCCGCAGACGACATGCTCCAGGCATCAACAAATCCC
AGCGCTCGCTGAACGAAGATGACCTGCTTGAAGCCATAATAAAGCTTCAAGGAAGCTCTGAGGCCATCTTTGGTAAAAGGTGAACTTGTCGGAAACCTCG
CACTCACTGACCAGCAGCGCTGTGTTGCAGTTAATGCAATCA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1371 bp | 456 aa | 113 | 1483 | + | No |
Chemistry : DDE
ORF sequence :
MAIHDAGMFTVKEINRLKILQDVVERNLRPGQAAEMLGITPRHCSRLLKRYRQSGPLGMNNQSRGRTGNRLLPTSLTDQALSIIRERYRDFGPTLAREKL
EEVHGLVLGKETIRRLMIKAGLWIPRRQRAPKIHQPRYRRPCTGELIQIDGCDHHWFENRGRPCTALVYVDDATSRLMHLLFVKSESTFSYFEATRGYIE
KYGKPMILYSDKASVFRVNNKHATTGPGETQFARAMRCLNITPLCAETSQAKGRVERAHLTLQDRLVKELRLKGISTIEAANAFAEEYKAPLHDFNAHRP
LALDDDLDAEFTWREPRRVSKSLTVQYDKMLYLIEDSEYSRRAIGKYIDVWHYPDGHKELRLNGVLLPYSTYDRLSEVDPVAIVDNKRLGHVLDVARQVQ
KKRDNNRSQSLPSGDEPSRRRHAPGINKSQRSLNEDDLLEAIIKLQGSSEAIFGKR
EEVHGLVLGKETIRRLMIKAGLWIPRRQRAPKIHQPRYRRPCTGELIQIDGCDHHWFENRGRPCTALVYVDDATSRLMHLLFVKSESTFSYFEATRGYIE
KYGKPMILYSDKASVFRVNNKHATTGPGETQFARAMRCLNITPLCAETSQAKGRVERAHLTLQDRLVKELRLKGISTIEAANAFAEEYKAPLHDFNAHRP
LALDDDLDAEFTWREPRRVSKSLTVQYDKMLYLIEDSEYSRRAIGKYIDVWHYPDGHKELRLNGVLLPYSTYDRLSEVDPVAIVDNKRLGHVLDVARQVQ
KKRDNNRSQSLPSGDEPSRRRHAPGINKSQRSLNEDDLLEAIIKLQGSSEAIFGKR
Blast result :
Comments
ISSen13 is 80% aa similar to ISKpn21.
References
1]Patricia Siguier (2020) Direct submission.
2] Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S., Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P. (2020) Direct GenBank submission.
2] Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S., Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P. (2020) Direct GenBank submission.