ISSen11

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP006057 ND Salmonella enterica
Salmonella enterica
Salmonella enterica subsp. enterica Serovar Cubana CFSAN002050 plasmid
DNA section
IS Length : 2610 bp

Ends


IR Length : 28/35

IRL : TGCCTATTCCGGCCGATCGTGAACGGTCATTCCGGTTCAACGTGAACACC
IRR : TGCGTATTCCGGCGAAGTTGAACAGTGATTCCGGCCAACGTGAACACCGC

Insertion site


Left flankDirect repeatRight flankDR Length
TATACCCAATTGGTGGGTGGGGTGGGCCATAATGAATTCA0

DNA sequence

TGCCTATTCCGGCCGATCGTGAACGGTCATTCCGGTTCAACGTGAACACCGATTCTGGTTCAACGTGAACGCTCATTCCGGCCCAAGCTGAACACTTTTG
CCCCATTTTCCGGAATGGGTGTTCATGATGCCGGAACAGCTGTTCACGTTGTCCGGAATCTGTCTTAACGCATTGAATTAAAAACCTTTGGTAGTCTCTC
CCCTTTGCCGGGAAGAGACCATGTCCGCCAAGAGGATTGCAATGCGTAAAATTCGTGATGTTCTGCGACTACGGCTACAGGCCGGGCTCTCCTTCCGCCA
GATCAGCCTCAGCACCAAGGTCAGCGTCGGCGCCATCCAGAAGCTGCTCAAAACCGCCGAGCAGTTGCAGCTGGCCTGGCCGCTGCCGGACGGGCTGGAT
GACACCCAACTGGCCCGGCTGTTCTATCCCGCTGCCGACACCCGCGGCAGTTCCCGCTTCCAGCTCCCGGACTGGCCCACGGTGCATCAGGAGCTCAAGC
GCAAGGGCATGTCGATGCAACTGCTGTGGCAGGAATACACCGAGCGTTACCCCAACCGCTGCTACAGCTACTCCCAGTTCTGCGAGCGCTACCGGGGCTG
GTGCCAGCTGCAGAAGCGCTCCATGCGCCAGCAGCACAAGGCCGGCGAGAAGTGCTTTATCGACTACTGTGGCCCCACCGTGCCCATCGTCTCAGGCTCG
ACCGGCGAGATCCGCCAGGCTCAGATCTTTGTCGCGGTGCTTGGCGCCTCCAACTACACCTATGCCGAAGCCACCCTGACCCAATCGCTACCGGATTGGC
TGCACAGCCACGTCCGCGCCTTTGAATTCTTCGGCGGGACGCCGGCCCTGCTGGTGCCAGACAACCTCAAGAGCGGGGTGAACAAGGCCTGCCGTTATGA
GCCGGAGCTCAATCCCAGCTACCAGCAGCTGGCCGCCCATTACCAGCTGGCGGTGATGCCGGCGCGTCCTTACAAACCCAAGGACAAAGCCAAGGCGGAG
GTTGGGGTTCAGGTGGTCGAACGCTGGATCCTGGCGCGGTTACGCCATCACACCTTCTTCTCGCTGGCGGAGCTGAACCAGTGTCTCCGCGCGCTACTCA
CCGAGCTCAATGAGCGCCCGTTCAAGCAGCTACCGGGCAACCGCCGTCAGGCTTTCGAGCAGCTGGACCAGCCCGCGCTCACGCCGCTGCCACAGCAGCC
TTACCGTTACGTGGCGATCAAGTCGGTCAAGGTCAACATCGACTACCACGTACAGTTCGAGCAGCACCACTACTCGGCACCCCATCAGTACGTCGGCGAG
ACGCTGGAACTGCATGCCGGCGACCAGCTGGTGCAGCTCTACTTCCGCCAGCAGCTGGTGGCCAGCCATCCGCGCAAGCACCAGCCCGGCACCACCACCC
TGGCGGCGCACATGCCGGTGCGCCACAGCAAGCAGCAGGCCTGGACCCCGGGCCGACTCAAGCAGTGGGCGCAGGATATCGGCCCCGACACCCTGCGCTG
GGTGAGCGACCGGCTGGCCGAGAAAGCGCATCCGGAACAGGCCTACCGGCTCTGTCTGGGACTGCTCAACCTCACCCGCAGCTACCCGCCAGAGCGGGTG
AACGGCTGCTGCCAACTCGCCAACCGCGAGGGGTTAAGCCGTCTTAAGCAGCTCAAATCGGTACTCGCCAGCAACCGTGACCAACTGCCTGAGCAACCGA
GCTTCACCTTGGAGCTCCCCCAAAGCCACGACAACATCCGTGGCCCCAACCACTTCCACTAAGCGGAGAACAGCATGAGCCAACAGACCCTCAACCGCCT
GCGCGAGCTCAGACTCGGCGGCATGGCCGCTGCCCTGCAGCAGCAACAAGAACAGGTCGCGACCTACGACGGCCTGTCGTTTATCGAACGGCTGGGACTC
TTGGTCGAGCAAGAACATCTGGCGCGCGAGCAACGCAAACAGGCGCGGCTGGTGCGCCACGCTCGCCTCAAGCTGAGCGCCACCACCCAAGAGATCGACT
ACCAGCACCCGCGCAACATCGACCGAGCCCAGATCGCCCGGCTGGCCCAGGGCGACTGGCTGCAACGCGGGCAGAACCTGCTGATCACCGGCCCCTGCGG
CAGCGGCAAGACCTATCTGGCCTGCGCCTTGGGCTATCAGGCCTGTCTGCAGGGCTACGGCACCCACTACCACCGCCTGTCACGGCTGCTGCAGAGCCTG
ACCCAGGCCAAGGCCGACGGTAGCTACGGCCGGCTATTGGCCCAGTTGGCCAAGGTCGAGCTGCTGATCCTCGATGACTGGGGGCTGGAGCCGCTGCTAC
CCGCCCAGCGCCACGATCTGCTGGAGATCATGGACGACCGTCACGGCCGCCATTCGACCGTGGTGATCAGCCAGCTGCCGACCGACCAGTGGTACGCCAG
CATCGGTGACAGCACCCTCGCTGAAGCGATCCTCGATCGGCTCATGCACAACGCCCACCGGCTGCAACTGAAGGGCGAATCGATGCGCAAACAACGATCG
CCATTGACCCAAGATGAACAGCCGCGCTAAAAAGCCGGCAAGGGAAATGCGCTAAGACGAGCGGTGTTCACGTTGGCCGGAATCACTGTTCAACTTCGCC
GGAATACGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1521 bp506 aa2421762+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKIRDVLRLRLQAGLSFRQISLSTKVSVGAIQKLLKTAEQLQLAWPLPDGLDDTQLARLFYPAADTRGSSRFQLPDWPTVHQELKRKGMSMQLLWQEYT
ERYPNRCYSYSQFCERYRGWCQLQKRSMRQQHKAGEKCFIDYCGPTVPIVSGSTGEIRQAQIFVAVLGASNYTYAEATLTQSLPDWLHSHVRAFEFFGGT
PALLVPDNLKSGVNKACRYEPELNPSYQQLAAHYQLAVMPARPYKPKDKAKAEVGVQVVERWILARLRHHTFFSLAELNQCLRALLTELNERPFKQLPGN
RRQAFEQLDQPALTPLPQQPYRYVAIKSVKVNIDYHVQFEQHHYSAPHQYVGETLELHAGDQLVQLYFRQQLVASHPRKHQPGTTTLAAHMPVRHSKQQA
WTPGRLKQWAQDIGPDTLRWVSDRLAEKAHPEQAYRLCLGLLNLTRSYPPERVNGCCQLANREGLSRLKQLKSVLASNRDQLPEQPSFTLELPQSHDNIR
GPNHFH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
756 bp251 aa17752530+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MSQQTLNRLRELRLGGMAAALQQQQEQVATYDGLSFIERLGLLVEQEHLAREQRKQARLVRHARLKLSATTQEIDYQHPRNIDRAQIARLAQGDWLQRGQ
NLLITGPCGSGKTYLACALGYQACLQGYGTHYHRLSRLLQSLTQAKADGSYGRLLAQLAKVELLILDDWGLEPLLPAQRHDLLEIMDDRHGRHSTVVISQ
LPTDQWYASIGDSTLAEAILDRLMHNAHRLQLKGESMRKQRSPLTQDEQPR

 

Blast result :
Comments
ISSen11 is 87% aa (transposase) similar to ISAs29.
References
1] Dongsheng Zhou (2020) Direct submission.
2] Strain,E.A., Allard,M.W., Payne,J. and Timme,R. (2013) Direct GenBank submission.