ISPsp16
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003962 | ND | Pseudomonas sp. | Pseudomonas sp. VLB120 pSTY |
DNA section
IS Length : 2574 bp
Ends
IR Length : 51/59
IRL : TGCGGATTCCACGCGCACTTGGACACCCATTCCACGAACACTTGGACACT
IRR : TGCGGATTCCACGACACTTGGACACTCAGCCCACGATCATTTGGACACTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGCCCTTGT | CCTGGAG | CAGGATTTTG | 0 |
DNA sequence
TGCGGATTCCACGCGCACTTGGACACCCATTCCACGAACACTTGGACACTGATTCCACGAGCATTTGGACAGTGATTTTCCACTGACCCAGCCCATGCTC
AGGCAGGCAGCGACGCAGGATTATTCACTACCATCGACCTCTTTTCTCGAAGCGAAGAGGTCGTCGTGGAGCGTATATCCATGCGTAAAATCCGAGAGGT
ACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAGATCGCCACCAGCCTTCGCATCAGCAGTGGCAGCGCCGGCAACTACCTGCATCGCTTCAAC
GCTTGCGGGCTGACCTGGCCGACGGCGTTGTCGGATGCCGAACTGGAACGCTGCCTGTTCCCGCCAGCGCCGACGGTTCCCAGCGATCAACGTCCGATGC
CGGACTGGGCTCATGTCCATGCCGAACTGTGCCGTCCCGGCGTCACCCTGGCCCTGCTTTGGCAAGAGTATCGACTCAGCCATCCGCAAGGCTTCCAGTA
CAGCTGGTTCTGCGAGCATTACCGCCTCTGGGCCGCCAAGGTCGACGTGGTCATGCGCCAGGAACACCGTGCCGGCGAAAAGCTGTTTGTCGATTACGCT
GGCCAGACCGTGCCAGTCATTGATCGGCGAACCGGCGAGATCCGCCAAACGCAGATCTTCGTCGCCGTCCTCGGCGCGTCCAGCTACACCTTTGCCGAGG
CCACCTGGTCGCAGAAACTGCCCGACTGGCTGGGCTCGCACGTGCGCTGCTTCGCCTTTTTGGGCGGTACATCGCAGATCCTGGTACCGGACAATCTGCG
CAGCGGCGTTACCAAAGCGCATCGTTACGAGCCTGACATCAATCCCAGTTACCGCGACCTGGCCGAGCATTACGGCGTGGCCGTATTGCCTGCCAGATCC
CGCAAGCCTCGGGACAAAGCCAAGGTCGAAGTCGGCGTGCAAGTGGTCGAGCGCTGGATCCTGGCAGTGCTGCGCAATCGGCAGTTCTTTTCGCTGGGTG
AACTCAACACGGCCATCGGACTGCTGCTGGATCGCCTCAACCAAAAGCCCTTCAAAAAGCTGCCCGGCTCGCGCCGTTCGGCCTTCGAGGCCATCGACCA
ACCGGCGTTGCAACCGCTACCGGAACACCCTTACATCTACGCCGAGTGGAAAAAGGTGCGGGTGCACATCGACTACCACGTCGAGGTCGACGGTCACTTC
TACTCGGTGCCATACCAACTGGTGAAGCACCAACTCGAAGTGCGACTGACTGCGCAGACCGTCGAGTGCTTCCACGCCAACCAGCGCGTGGCCAGCCATC
TTCGCTCGCCGCACAAAGGCCGCCACACCACCCACACCGAGCACATGCCCAAGAGCCACCGCGAGCACGCCGAATGGACACCGCAACGGCTGATCCGCTG
GGCAGAGCAAACCGGGCCCAACACCGCTGGCGTCATCGCCTACATCCTCGAACGCCGAATCCACCCGCAGCATGGCTTCCGCGCCTGCCTGGGCATCCTG
CGCCTGAGCAAACAGCACGGCGAAGAGCGGCTGGAAGCCGCTTGCCAGCGTGCGCTGGCACTGGGCGCATGTAGCTACAAAAGCCTCGAATCGATCCTGC
GCCAAGGCTTGGAAAGGCTGCCGCTGACCCAGCAAAACCTGCCACTGCTGCCCGAAAAGCACATCAACCTGCGTGGCCCCGACTACTACCACTGACCTGA
AAAGGAGCATCAAGATGCTACCCAACCCGACTCTGGACAAGCTGCAAACCCTGCGGCTGCACGGCATGATCAAAGCGCTGAGCGAGCAACACGCAACGCC
CGACATCAGCGATCTTAGCTTCGACGAACGCCTTGGCCTGATGGTCGACCGCGAACTGACCGAGCGTGAAGATGCTCGGCTGACCACTCGCCTCAAATCC
GCGAGACTACGCCACAACGCCTGCTTGGAAGATATCGATTACCGCAGCCCACGCGGCCTGGACAAGGCCCTGATCCTGCAACTTGGTAGCGGCCAATGGC
TGCGTGATGGCCTGAACCTGATCATCGGCGGGCCGACAGGCGTAGGCAAAACCTGGCTCGCCTGCGCGCTGGCCCACAAGGCCTGCCGGGACGGTTACAG
CGTGCGTTATCTGCGTCTGCCTCGCTTGATGGAAGAACTGGGCCTGGCCCACGGCGACGGTCGCTTCGCCAAACTCATGGCGGGTTATGCCAAGACCGAT
CTGCTGATCCTGGACGACTGGGGCCTTGCACCGTTTACCGCCGCGCAGCGGCGCGACATGCTGGAACTGCTGGACGACCGTTACGGAAACCGCTCGACGC
TGGTGACCAGCCAGATGCCGGTGGATAAATGGCATGCGCTGATCGGTGATCCGACCTTGGGCGATGCGATCCTCGACCGGCTGGTGCACAACGCTTACCG
CATCGAACTGAAGGGCGAATCGATGCGCAGGCGCGCAACGAAATTGACTGCAACCGGGACTTCAGACTAACAATGCGAACCTGCGTCGCTGCGCTCCGAC
TGCCTGTCCAAGTGAGCGTGGAATGAGTGTCCAAATGATCGTGGGCTGAGTGTCCAAGTGTCGTGGAATCCGCA
AGGCAGGCAGCGACGCAGGATTATTCACTACCATCGACCTCTTTTCTCGAAGCGAAGAGGTCGTCGTGGAGCGTATATCCATGCGTAAAATCCGAGAGGT
ACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAGATCGCCACCAGCCTTCGCATCAGCAGTGGCAGCGCCGGCAACTACCTGCATCGCTTCAAC
GCTTGCGGGCTGACCTGGCCGACGGCGTTGTCGGATGCCGAACTGGAACGCTGCCTGTTCCCGCCAGCGCCGACGGTTCCCAGCGATCAACGTCCGATGC
CGGACTGGGCTCATGTCCATGCCGAACTGTGCCGTCCCGGCGTCACCCTGGCCCTGCTTTGGCAAGAGTATCGACTCAGCCATCCGCAAGGCTTCCAGTA
CAGCTGGTTCTGCGAGCATTACCGCCTCTGGGCCGCCAAGGTCGACGTGGTCATGCGCCAGGAACACCGTGCCGGCGAAAAGCTGTTTGTCGATTACGCT
GGCCAGACCGTGCCAGTCATTGATCGGCGAACCGGCGAGATCCGCCAAACGCAGATCTTCGTCGCCGTCCTCGGCGCGTCCAGCTACACCTTTGCCGAGG
CCACCTGGTCGCAGAAACTGCCCGACTGGCTGGGCTCGCACGTGCGCTGCTTCGCCTTTTTGGGCGGTACATCGCAGATCCTGGTACCGGACAATCTGCG
CAGCGGCGTTACCAAAGCGCATCGTTACGAGCCTGACATCAATCCCAGTTACCGCGACCTGGCCGAGCATTACGGCGTGGCCGTATTGCCTGCCAGATCC
CGCAAGCCTCGGGACAAAGCCAAGGTCGAAGTCGGCGTGCAAGTGGTCGAGCGCTGGATCCTGGCAGTGCTGCGCAATCGGCAGTTCTTTTCGCTGGGTG
AACTCAACACGGCCATCGGACTGCTGCTGGATCGCCTCAACCAAAAGCCCTTCAAAAAGCTGCCCGGCTCGCGCCGTTCGGCCTTCGAGGCCATCGACCA
ACCGGCGTTGCAACCGCTACCGGAACACCCTTACATCTACGCCGAGTGGAAAAAGGTGCGGGTGCACATCGACTACCACGTCGAGGTCGACGGTCACTTC
TACTCGGTGCCATACCAACTGGTGAAGCACCAACTCGAAGTGCGACTGACTGCGCAGACCGTCGAGTGCTTCCACGCCAACCAGCGCGTGGCCAGCCATC
TTCGCTCGCCGCACAAAGGCCGCCACACCACCCACACCGAGCACATGCCCAAGAGCCACCGCGAGCACGCCGAATGGACACCGCAACGGCTGATCCGCTG
GGCAGAGCAAACCGGGCCCAACACCGCTGGCGTCATCGCCTACATCCTCGAACGCCGAATCCACCCGCAGCATGGCTTCCGCGCCTGCCTGGGCATCCTG
CGCCTGAGCAAACAGCACGGCGAAGAGCGGCTGGAAGCCGCTTGCCAGCGTGCGCTGGCACTGGGCGCATGTAGCTACAAAAGCCTCGAATCGATCCTGC
GCCAAGGCTTGGAAAGGCTGCCGCTGACCCAGCAAAACCTGCCACTGCTGCCCGAAAAGCACATCAACCTGCGTGGCCCCGACTACTACCACTGACCTGA
AAAGGAGCATCAAGATGCTACCCAACCCGACTCTGGACAAGCTGCAAACCCTGCGGCTGCACGGCATGATCAAAGCGCTGAGCGAGCAACACGCAACGCC
CGACATCAGCGATCTTAGCTTCGACGAACGCCTTGGCCTGATGGTCGACCGCGAACTGACCGAGCGTGAAGATGCTCGGCTGACCACTCGCCTCAAATCC
GCGAGACTACGCCACAACGCCTGCTTGGAAGATATCGATTACCGCAGCCCACGCGGCCTGGACAAGGCCCTGATCCTGCAACTTGGTAGCGGCCAATGGC
TGCGTGATGGCCTGAACCTGATCATCGGCGGGCCGACAGGCGTAGGCAAAACCTGGCTCGCCTGCGCGCTGGCCCACAAGGCCTGCCGGGACGGTTACAG
CGTGCGTTATCTGCGTCTGCCTCGCTTGATGGAAGAACTGGGCCTGGCCCACGGCGACGGTCGCTTCGCCAAACTCATGGCGGGTTATGCCAAGACCGAT
CTGCTGATCCTGGACGACTGGGGCCTTGCACCGTTTACCGCCGCGCAGCGGCGCGACATGCTGGAACTGCTGGACGACCGTTACGGAAACCGCTCGACGC
TGGTGACCAGCCAGATGCCGGTGGATAAATGGCATGCGCTGATCGGTGATCCGACCTTGGGCGATGCGATCCTCGACCGGCTGGTGCACAACGCTTACCG
CATCGAACTGAAGGGCGAATCGATGCGCAGGCGCGCAACGAAATTGACTGCAACCGGGACTTCAGACTAACAATGCGAACCTGCGTCGCTGCGCTCCGAC
TGCCTGTCCAAGTGAGCGTGGAATGAGTGTCCAAATGATCGTGGGCTGAGTGTCCAAGTGTCGTGGAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 181 | 1695 | + | No |
Chemistry : DDE
ORF sequence :
MRKIREVLRLKFDAGLSVRKIATSLRISSGSAGNYLHRFNACGLTWPTALSDAELERCLFPPAPTVPSDQRPMPDWAHVHAELCRPGVTLALLWQEYRLS
HPQGFQYSWFCEHYRLWAAKVDVVMRQEHRAGEKLFVDYAGQTVPVIDRRTGEIRQTQIFVAVLGASSYTFAEATWSQKLPDWLGSHVRCFAFLGGTSQI
LVPDNLRSGVTKAHRYEPDINPSYRDLAEHYGVAVLPARSRKPRDKAKVEVGVQVVERWILAVLRNRQFFSLGELNTAIGLLLDRLNQKPFKKLPGSRRS
AFEAIDQPALQPLPEHPYIYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHLRSPHKGRHTTHTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEERLEAACQRALALGACSYKSLESILRQGLERLPLTQQNLPLLPEKHINLRGP
DYYH
HPQGFQYSWFCEHYRLWAAKVDVVMRQEHRAGEKLFVDYAGQTVPVIDRRTGEIRQTQIFVAVLGASSYTFAEATWSQKLPDWLGSHVRCFAFLGGTSQI
LVPDNLRSGVTKAHRYEPDINPSYRDLAEHYGVAVLPARSRKPRDKAKVEVGVQVVERWILAVLRNRQFFSLGELNTAIGLLLDRLNQKPFKKLPGSRRS
AFEAIDQPALQPLPEHPYIYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHLRSPHKGRHTTHTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEERLEAACQRALALGACSYKSLESILRQGLERLPLTQQNLPLLPEKHINLRGP
DYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1715 | 2470 | + | No |
AG : IS21 helper
ORF sequence :
MLPNPTLDKLQTLRLHGMIKALSEQHATPDISDLSFDERLGLMVDRELTEREDARLTTRLKSARLRHNACLEDIDYRSPRGLDKALILQLGSGQWLRDGL
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTATGTSD
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTATGTSD
Blast result :
Comments
ISPsp16 is 97% (Transposase) aa similar to ISPsy40.
References
1] Dongsheng Zhou (2020) Direct submission.
2] Volmer,J., Neumann,C., Buhler,B. and Schmid,A. (2014) Appl. Environ. Microbiol. 80 (20), 6539-6548.
2] Volmer,J., Neumann,C., Buhler,B. and Schmid,A. (2014) Appl. Environ. Microbiol. 80 (20), 6539-6548.