ISDlsp1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JN648090.1 | ND | Delftia sp. | Delftia sp. KV29 plasmid pKV29 |
DNA section
IS Length : 1184 bp
Ends
IR Length : 15/20
IRL : GGAAATCCTGCAAAACCTCGTGAACAACCTGATAGACGCGGCCCAGTCAT
IRR : GGATGTCCTGAACAACTCGAACTCGTGAGTGCTACATGGCCGCCGTTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTGATGGATGGG | TTAG | AACTCTCTGGGGCA | 4 |
DNA sequence
GGAAATCCTGCAAAACCTCGTGAACAACCTGATAGACGCGGCCCAGTCATGGCATGCTCACAGGCATGAAGCAAAGCAGCCTTGAGCTGAACCTGAGCAC
CAGGAAGACCCGCAAACAAGAGCTGCTGGCCCAGATGGATCGGGTGGTTCCCTGGGCCGCCTTGGTCGAACTCATTGCGCCCTATTACCCCGAAGGCAAG
AACGGGCGCCCACCCTTTGCTCTGGAGGCCATGCTGCGCGTTCACTGCATGCAGCAGTGGTTCACCCTGTCGGATCTGGCGATGGAAGAAGCCTTCTTTG
ACACCCCGATCTACCGGGAGTTTGCCGGGCTTGATGCACATGGCCGAATGCCCGATGAGAGCACCATCTTGCGCTTTCGCCACCGGCTGGAGAAACACAG
GCTGGCCGAGCAGATTCTGGCCACCGTCAACGACCTGTTGGCAGCCCGGGGCTTGCTGCTCAAGGCCGGTACTGCGGTGGATGCCACCTTGATTGCAGCG
CCCAGCTCCACCAAGAACAAGGACAGAAAGCGCGATCCGGAGATGCATTCGAGCCAAAAGGGCAACGAGTGGCACTTTGGCATGAAGGCCCACATCGGCG
TGGATGCAGACTCAGGCTTGGTACACACCGTCATTGGCACCTCGGGCAACGTGGCCGACGTCACTGAAGGCAACAGCTTGCTCCATGGTGAGGAAACGGA
TGCCTTTGGTGATGCTGGCTACCAAGGCGCACACAAGCGCCCGGATGCCAGGAAGGATGTCACCTGGCATGTGGCGATGCGCCCAGGCAAGCGCAAAGAG
CTGGACAAAGAGAACAACCCCGTTGATGCGCTCATAGACCAAGTGGAGAAGATCAAGGCCAGCATCCGGGCCAAGGTGGAACACCCCTTCAGGGTGATCA
AACGACAGTTTGGCTATACCAAGGTGCGTTACCGGGGGCTCAAGAAGAACACGTTGCAGCTCAAGACGCTGTTTGCACTATCGAACCTGTGGATGGTGCG
CCATCAATTGCTGGGGGCGCAGGGATGAGTGCGCCTGAAATCAGGCAAACGGTCGCCAAAGCGGCGAAAAGGGCCTCAGGGCTCCATAAAAGCAGACCCA
CCTGAGGCAAAAAAGGCAGCCTTTGCGCCATTCTGAAAACGGCGGCCATGTAGCACTCACGAGTTCGAGTTGTTCAGGACATCC
CAGGAAGACCCGCAAACAAGAGCTGCTGGCCCAGATGGATCGGGTGGTTCCCTGGGCCGCCTTGGTCGAACTCATTGCGCCCTATTACCCCGAAGGCAAG
AACGGGCGCCCACCCTTTGCTCTGGAGGCCATGCTGCGCGTTCACTGCATGCAGCAGTGGTTCACCCTGTCGGATCTGGCGATGGAAGAAGCCTTCTTTG
ACACCCCGATCTACCGGGAGTTTGCCGGGCTTGATGCACATGGCCGAATGCCCGATGAGAGCACCATCTTGCGCTTTCGCCACCGGCTGGAGAAACACAG
GCTGGCCGAGCAGATTCTGGCCACCGTCAACGACCTGTTGGCAGCCCGGGGCTTGCTGCTCAAGGCCGGTACTGCGGTGGATGCCACCTTGATTGCAGCG
CCCAGCTCCACCAAGAACAAGGACAGAAAGCGCGATCCGGAGATGCATTCGAGCCAAAAGGGCAACGAGTGGCACTTTGGCATGAAGGCCCACATCGGCG
TGGATGCAGACTCAGGCTTGGTACACACCGTCATTGGCACCTCGGGCAACGTGGCCGACGTCACTGAAGGCAACAGCTTGCTCCATGGTGAGGAAACGGA
TGCCTTTGGTGATGCTGGCTACCAAGGCGCACACAAGCGCCCGGATGCCAGGAAGGATGTCACCTGGCATGTGGCGATGCGCCCAGGCAAGCGCAAAGAG
CTGGACAAAGAGAACAACCCCGTTGATGCGCTCATAGACCAAGTGGAGAAGATCAAGGCCAGCATCCGGGCCAAGGTGGAACACCCCTTCAGGGTGATCA
AACGACAGTTTGGCTATACCAAGGTGCGTTACCGGGGGCTCAAGAAGAACACGTTGCAGCTCAAGACGCTGTTTGCACTATCGAACCTGTGGATGGTGCG
CCATCAATTGCTGGGGGCGCAGGGATGAGTGCGCCTGAAATCAGGCAAACGGTCGCCAAAGCGGCGAAAAGGGCCTCAGGGCTCCATAAAAGCAGACCCA
CCTGAGGCAAAAAAGGCAGCCTTTGCGCCATTCTGAAAACGGCGGCCATGTAGCACTCACGAGTTCGAGTTGTTCAGGACATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
971 bp | 324 aa | 58 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MLTGMKQSSLELNLSTRKTRKQELLAQMDRVVPWAALVELIAPYYPEGKNGRPPFALEAMLRVHCMQQWFTLSDLAMEEAFFDTPIYREFAGLDAHGRMP
DESTILRFRHRLEKHRLAEQILATVNDLLAARGLLLKAGTAVDATLIAAPSSTKNKDRKRDPEMHSSQKGNEWHFGMKAHIGVDADSGLVHTVIGTSGNV
ADVTEGNSLLHGEETDAFGDAGYQGAHKRPDARKDVTWHVAMRPGKRKELDKENNPVDALIDQVEKIKASIRAKVEHPFRVIKRQFGYTKVRYRGLKKNT
LQLKTLFALSNLWMVRHQLLGAQG
DESTILRFRHRLEKHRLAEQILATVNDLLAARGLLLKAGTAVDATLIAAPSSTKNKDRKRDPEMHSSQKGNEWHFGMKAHIGVDADSGLVHTVIGTSGNV
ADVTEGNSLLHGEETDAFGDAGYQGAHKRPDARKDVTWHVAMRPGKRKELDKENNPVDALIDQVEKIKASIRAKVEHPFRVIKRQFGYTKVRYRGLKKNT
LQLKTLFALSNLWMVRHQLLGAQG
Blast result :
Comments
ISDlsp1 is 84% aa similar to ISBmu20.
References
1] Chandler M. (2020) Direct submission.
2) Stolze Y, Eikmeyer F, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A. (2012) Microbiology 2012;158:2060-72.
2) Stolze Y, Eikmeyer F, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A. (2012) Microbiology 2012;158:2060-72.