ISDlsp1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JN648090.1 ND Delftia sp.
Delftia sp. KV29 plasmid pKV29
DNA section
IS Length : 1184 bp

Ends


IR Length : 15/20

IRL : GGAAATCCTGCAAAACCTCGTGAACAACCTGATAGACGCGGCCCAGTCAT
IRR : GGATGTCCTGAACAACTCGAACTCGTGAGTGCTACATGGCCGCCGTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTGATGGATGGGTTAGAACTCTCTGGGGCA4

DNA sequence

GGAAATCCTGCAAAACCTCGTGAACAACCTGATAGACGCGGCCCAGTCATGGCATGCTCACAGGCATGAAGCAAAGCAGCCTTGAGCTGAACCTGAGCAC
CAGGAAGACCCGCAAACAAGAGCTGCTGGCCCAGATGGATCGGGTGGTTCCCTGGGCCGCCTTGGTCGAACTCATTGCGCCCTATTACCCCGAAGGCAAG
AACGGGCGCCCACCCTTTGCTCTGGAGGCCATGCTGCGCGTTCACTGCATGCAGCAGTGGTTCACCCTGTCGGATCTGGCGATGGAAGAAGCCTTCTTTG
ACACCCCGATCTACCGGGAGTTTGCCGGGCTTGATGCACATGGCCGAATGCCCGATGAGAGCACCATCTTGCGCTTTCGCCACCGGCTGGAGAAACACAG
GCTGGCCGAGCAGATTCTGGCCACCGTCAACGACCTGTTGGCAGCCCGGGGCTTGCTGCTCAAGGCCGGTACTGCGGTGGATGCCACCTTGATTGCAGCG
CCCAGCTCCACCAAGAACAAGGACAGAAAGCGCGATCCGGAGATGCATTCGAGCCAAAAGGGCAACGAGTGGCACTTTGGCATGAAGGCCCACATCGGCG
TGGATGCAGACTCAGGCTTGGTACACACCGTCATTGGCACCTCGGGCAACGTGGCCGACGTCACTGAAGGCAACAGCTTGCTCCATGGTGAGGAAACGGA
TGCCTTTGGTGATGCTGGCTACCAAGGCGCACACAAGCGCCCGGATGCCAGGAAGGATGTCACCTGGCATGTGGCGATGCGCCCAGGCAAGCGCAAAGAG
CTGGACAAAGAGAACAACCCCGTTGATGCGCTCATAGACCAAGTGGAGAAGATCAAGGCCAGCATCCGGGCCAAGGTGGAACACCCCTTCAGGGTGATCA
AACGACAGTTTGGCTATACCAAGGTGCGTTACCGGGGGCTCAAGAAGAACACGTTGCAGCTCAAGACGCTGTTTGCACTATCGAACCTGTGGATGGTGCG
CCATCAATTGCTGGGGGCGCAGGGATGAGTGCGCCTGAAATCAGGCAAACGGTCGCCAAAGCGGCGAAAAGGGCCTCAGGGCTCCATAAAAGCAGACCCA
CCTGAGGCAAAAAAGGCAGCCTTTGCGCCATTCTGAAAACGGCGGCCATGTAGCACTCACGAGTTCGAGTTGTTCAGGACATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
971 bp324 aa581028+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTGMKQSSLELNLSTRKTRKQELLAQMDRVVPWAALVELIAPYYPEGKNGRPPFALEAMLRVHCMQQWFTLSDLAMEEAFFDTPIYREFAGLDAHGRMP
DESTILRFRHRLEKHRLAEQILATVNDLLAARGLLLKAGTAVDATLIAAPSSTKNKDRKRDPEMHSSQKGNEWHFGMKAHIGVDADSGLVHTVIGTSGNV
ADVTEGNSLLHGEETDAFGDAGYQGAHKRPDARKDVTWHVAMRPGKRKELDKENNPVDALIDQVEKIKASIRAKVEHPFRVIKRQFGYTKVRYRGLKKNT
LQLKTLFALSNLWMVRHQLLGAQG

 

Blast result :
Comments
ISDlsp1 is 84% aa similar to ISBmu20.
References
1] Chandler M. (2020) Direct submission.
2) Stolze Y, Eikmeyer F, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A. (2012) Microbiology 2012;158:2060-72.